Phân loại phân tử và siêu cấu trúc của vi tảo địa y Asterochloris mediterranea sp. nov. từ hệ sinh thái Địa Trung Hải và Quần đảo Canary
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Abràmoff, 2004, Image processing with ImageJ, Biophotonics International, 11, 36
Ahmadjian, 1987, Coevolution in lichens, Ann N Y Acad Sci, 503, 307, 10.1111/j.1749-6632.1987.tb40617.x
Ahmadjian, 1993, The Lichen Symbiosis
Ahti, 2000, Cladoniaceae, Flora Neotropica Monograph, 78, 1
Aschenbrenner, 2014, Microbial cargo: do bacteria on symbiotic propagules reinforce the microbiome of lichens?, Environ Microbiol, 16, 3743, 10.1111/1462-2920.12658
Bačkor, 2010, Photobiont diversity in lichens from metal-rich substrata based on ITS rDNA sequences, Ecotoxicol Environ Saf, 73, 603, 10.1016/j.ecoenv.2009.11.002
Beiggi, 2007, Evolution of ITS ribosomal RNA secondary structures in fungal and algal symbionts of selected species of Cladonia sect. Cladonia (Cladoniaceae, Ascomycotina), J Mol Evol, 64, 528, 10.1007/s00239-006-0115-x
Burgaz, 1992, Contribution to the study of the genera Cladina and Cladonia in Spain. I, Nova Hedwigia, 55, 37
Burgaz, 2009, Cladoniaceae
Caisová, 2011, A close-up view on ITS2 evolution and speciation - a case study in the Ulvophyceae (Chlorophyta, Viridiplantae), BMC Evol Biol, 11, 262, 10.1186/1471-2148-11-262
Casano, 2011, Two Trebouxia algae with different physiological performances are ever-present in lichen thalli of Ramalina farinacea. Coexistence versus competition?, Environ Microbiol, 13, 806, 10.1111/j.1462-2920.2010.02386.x
Castresana, 2000, Selection of conserved blocks from multiple alignments for their use in phylogenetic analysis, Mol Biol Evol, 17, 540, 10.1093/oxfordjournals.molbev.a026334
Coleman, 2003, ITS2 is a double-edged tool for eukaryote evolutionary comparisons, Trends Genet, 19, 370, 10.1016/S0168-9525(03)00118-5
Coleman, 1998, Derivation of the secondary structure of the ITS-1 transcript in Volvocales and its taxonomic correlations, Protist, 149, 135, 10.1016/S1434-4610(98)70018-5
Dal Grande, 2014, Insights into intrathalline genetic diversity of the cosmopolitan lichen symbiotic green alga Trebouxia decolorans Ahmadjian using microsatellite markers, Mol Phylogenet Evol, 72, 54, 10.1016/j.ympev.2013.12.010
del Campo, 2010, Suitability of chloroplast LSU rDNA and its diverse group I introns for species recognition and phylogenetic analyses of lichen-forming Trebouxia algae, Mol Phylogenet Evol, 54, 437, 10.1016/j.ympev.2009.10.024
del Campo, 2010, South European populations of Ramalina farinacea (L.) Ach. share different Trebouxia algae, Bibliotheca Lichenologia, 105, 247
del Campo, 2013, The genetic structure of the cosmopolitan three-partner lichen Ramalina farinacea evidences the concerted diversification of symbionts, FEMS Microbiol Ecol, 83, 310, 10.1111/j.1574-6941.2012.01474.x
Fernández-Mendoza, 2011, Population structure of mycobionts and photobionts of the widespread lichen Cetraria aculeata, Mol Ecol, 20, 1208, 10.1111/j.1365-294X.2010.04993.x
Fontaine, 2010, Convergent evolution in Cladonia gracilis and allies, Lichenologist, 42, 323, 10.1017/S0024282909990569
Friedl, 1989, Comparative ultrastructure of pyrenoids in Trebouxia (Microthamniales, Chlorophyta), Plant Syst Evol, 164, 145, 10.1007/BF00940435
Galun, 1988, Lichenization, CRC Handbook of Lichenology, vol. II, 153
Gardes, 1993, ITS primers with enhanced specificity for basidiomycetes–application to the identification of mycorrhizae and rusts, Mol Ecol, 2, 113, 10.1111/j.1365-294X.1993.tb00005.x
Gasulla, 2009, Dehydration rate and time of desiccation affect recovery of the lichen alga [corrected] Trebouxia erici: alternative and classical protective mechanisms, Planta, 231, 195, 10.1007/s00425-009-1019-y
Gasulla, 2013, The response of Asterochloris erici (Ahmadjian) Skaloud et Peksa to desiccation: a proteomic approach, Plant Cell Environ, 36, 1363, 10.1111/pce.12065
Grube, 2007, Trouble with lichen: the re-evaluation and re-interpretation of thallus form and fruit body types in the molecular era, Mycol Res, 111, 1116, 10.1016/j.mycres.2007.04.008
Hausner, 2005, Unusual compact rDNA gene arrangements within some members of the Ascomycota: evidence for molecular co-evolution between ITS1 and ITS2, Genome, 48, 648, 10.1139/g05-037
Honegger, 1986, Ultrastructural studies in lichens. Haustorial types and their frequencies in a range of lichens with trebouxioid photobionts, New Phytol, 103, 785, 10.1111/j.1469-8137.1986.tb00853.x
Joseph, 1999, Ribosomal internal transcribed spacer 2 (ITS2) exhibits a common core of secondary structure in vertebrates and yeast, Nucleic Acids Res, 27, 4533, 10.1093/nar/27.23.4533
Katoh, 2002, mafft: a novel method for rapid multiple sequence alignment based on fast Fourier transform, Nucleic Acids Res, 30, 3059, 10.1093/nar/gkf436
Kelly, 2011, DNA barcoding of lichenized fungi demonstrates high identification success in a floristic context, New Phytol, 191, 288, 10.1111/j.1469-8137.2011.03677.x
Koetschan, 2010, The ITS2 Database III–sequences and structures for phylogeny, Nucleic Acids Res, 38, D275, 10.1093/nar/gkp966
Kotelko, 2010, Cladonia pyxidata and C. pocillum; genetic evidence to regard them as conspecific, Mycologia, 102, 534, 10.3852/09-030
Lalev, 1998, Conserved core structure in the internal transcribed spacer 1 of the Schizosaccharomyces pombe precursor ribosomal RNA, J Mol Biol, 284, 1341, 10.1006/jmbi.1998.2222
Lalev, 1999, Structural equivalence in the transcribed spacers of pre-rRNA transcripts in Schizosaccharomyces pombe, Nucleic Acids Res, 27, 3071, 10.1093/nar/27.15.3071
Lechowicz, 1974, Ecology of Cladonia lichens. II. Comparative physiological ecology of C. mitis, C. rangiferina, and C. uncialis, Can J Bot, 52, 411, 10.1139/b74-052
Litterski, 2004, World distribution of selected European Cladonia species, Symb Bot Upsal, 34, 205
Lott, 1998, Sequence analysis of the internal transcribed spacer 2 (ITS2) from yeast species within the genus Candida, Curr Microbiol, 36, 63, 10.1007/s002849900280
Magain, 2014, Do photobiont switch and cephalodia emancipation act as evolutionary drivers in the lichen symbiosis? A case study in the Pannariaceae (Peltigerales), PLoS ONE, 9, e89876, 10.1371/journal.pone.0089876
Mai, 1997, The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants, J Mol Evol, 44, 258, 10.1007/PL00006143
Marchant, 1968, Membrane systems associated with the plasmalemma of plant cells, Ann Bot, 32, 457, 10.1093/oxfordjournals.aob.a084221
Molins, 2013, Coexistence of different intrathalline symbiotic algae and bacterial biofilms in the foliose Canarian lichen Parmotrema pseudotinctorum, Vieraea: Folia scientarum biologicarum canariensium, 41, 349, 10.31939/vieraea.2013.41.23
Muggia, 2008, Genetic diversity and photobiont associations in selected taxa of the Tephromela atra group (Lecanorales, lichenised Ascomycota), Mycol Prog, 7, 147, 10.1007/s11557-008-0560-6
Muggia, 2013, The symbiotic playground of lichen thalli–a highly flexible photobiont association in rock-inhabiting lichens, FEMS Microbiol Ecol, 85, 313, 10.1111/1574-6941.12120
Muggia, 2014, Photobiont selectivity leads to ecological tolerance and evolutionary divergence in a polymorphic complex of lichenized fungi, Ann Bot (Lond), 114, 463, 10.1093/aob/mcu146
Myllys, 2003, Phylogeny of bipolar Cladonia arbuscula and Cladonia mitis (Lecanorales, Euascomycetes), Mol Phylogenet Evol, 27, 58, 10.1016/S1055-7903(02)00398-6
Nelsen, 2006, Actin type I introns offer potential for increasing phylogenetic resolution in Asterochloris (Chlorophyta: Trebouxiophyceae), Lichenologist, 38, 435, 10.1017/S0024282906005779
Nelsen, 2008, Dissociation and horizontal transmission of codispersing lichen symbionts in the genus Lepraria (Lecanorales: Stereocaulaceae), New Phytol, 177, 264, 10.1111/j.1469-8137.2007.02241.x
Nelsen, 2009, Symbiont flexibility in Thamnolia vermicularis (Pertusariales: Icmadophilaceae), Bryologist, 112, 404, 10.1639/0007-2745-112.2.404
Nyati, 2014, Green-algal photobiont diversity (Trebouxia spp.) in representatives of Teloschistaceae (Lecanoromycetes, lichen-forming ascomycetes), Lichenologist, 46, 189, 10.1017/S0024282913000819
Ohmura, 2006, Genetic combinations of symbionts in vegetatively reproducing lichen, Parmotrema tinctorum, based on ITS rDNA sequences, Bryologist, 109, 43, 10.1639/0007-2745(2006)109[0043:GCOSIA]2.0.CO;2
Osyczka, 2013, Phenotypic plasticity of primary thallus in selected Cladonia species (lichenized Ascomycota: Cladoniaceae), Biologia, 68, 365, 10.2478/s11756-013-0169-3
Peksa, 2008, Changes in chloroplast structure in lichenized algae, Symbiosis, 46, 153
Peksa, 2011, Do photobionts influence the ecology of lichens? A case study of environmental preferences in symbiotic green alga Asterochloris (Trebouxiophyceae), Mol Ecol, 20, 3936, 10.1111/j.1365-294X.2011.05168.x
Piercey-Normore, 2004, Selection of algal genotypes by three species of lichen fungi in the genus Cladonia, Can J Bot, 82, 947, 10.1139/b04-084
Piercey-Normore, 2010, Phylogenetic and haplotype analyses of four segregates within Cladonia arbuscula s.l., Botany, 88, 397, 10.1139/B10-027
Pino-Bodas, 2010, Insight into the Cladonia convoluta-C. foliacea (Cladoniaceae, Ascomycota) complex and related species, revealed through morphological, biochemical and phylogenetic analyses, Systematics and Biodiversity, 8, 575, 10.1080/14772000.2010.532834
Pino-Bodas, 2012, Species delimitations in the Cladonia cariosa group (Cladoniaceae, Ascomycota), Lichenologist, 44, 121, 10.1017/S002428291100065X
Pino-Bodas, 2012, Cladonia conista and C. humilis (Cladoniaceae) are different species, Bibliotheca Lichenologica, 108, 161
Pino-Bodas, 2012, Cladonia subturgida and C. iberica (Cladoniaceae) form a single, morphologically and chemically polymorphic species, Mycol Prog, 11, 269, 10.1007/s11557-011-0746-1
Pino-Bodas, 2013, Species delimitation in Cladonia (Ascomycota): a challenge to the DNA barcoding philosophy, Mol Ecol Resour, 13, 1058
Pino-Bodas, 2013, Cladonia verticillata (Cladoniaceae, Ascomycota), new record to Iberian Peninsula, Bot Complut, 37, 21
Rambold, 1998, Photobionts in lichens: possible indicators of phylogenetic relationships?, Bryologist, 101, 392, 10.1639/0007-2745(1998)101[392:PILPIO]2.0.CO;2
Řídká, 2014, Photobiont diversity in Indian Cladonia Lichens, with special emphasis on the geographical patterns, Terricolous Lichens in India, 53, 10.1007/978-1-4614-8736-4_4
Robards, 1968, On the ultrastructure of differentiating secondary xylem in willow, Protoplasma, 65, 449, 10.1007/BF01666303
Ronquist, 2012, MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space, Syst Biol, 61, 539, 10.1093/sysbio/sys029
Schoch, 2012, Nuclear ribosomal internal transcribed spacer (ITS) region as a universal DNA barcode marker for fungi, Proc Natl Acad Sci U S A, 109, 6241, 10.1073/pnas.1117018109
Schultz, 2005, A common core of secondary structure of the internal transcribed spacer 2 (ITS2) throughout the Eukaryota, RNA, 11, 361, 10.1261/rna.7204505
Škaloud, 2008, Comparative study of chloroplast morphology and ontogeny in Asterochloris (Trebouxiophyceae, Chlorophyta), Biologia, 63, 873, 10.2478/s11756-008-0115-y
Škaloud, 2010, Evolutionary inferences based on ITS rDNA and actin sequences reveal extensive diversity of the common lichen alga Asterochloris (Trebouxiophyceae, Chlorophyta), Mol Phylogenet Evol, 54, 36, 10.1016/j.ympev.2009.09.035
Škaloud, 2013, Ecological differentiation of cryptic species within an asexual protist morphospecies: a case study of filamentous green alga Klebsormidium (Streptophyta), J Eukaryot Microbiol, 60, 350, 10.1111/jeu.12040
Škaloud, 2015, Assembling the challenging puzzle of algal biodiversity: species delimitation within the genus Asterochloris (Trebouxiophyceae, Chlorophyta), J Phycol, 10.1111/jpy.12295
Škaloudová, 2013, A new species of Chrysosphaerella (Chrysophyceae: Chromulinales), Chrysosphaerella rotundata sp. nov., from Finland, Phytotaxa, 130, 34, 10.11646/phytotaxa.130.1.4
Spurr, 1969, A low-viscosity epoxy resin embedding for electron microscopy, J Ultrastruct res, 26, 31, 10.1016/S0022-5320(69)90033-1
Steinová, 2013, Genetic diversity and species delimitation of the zeorin-containing red-fruited Cladonia species (lichenized Ascomycota) assessed with ITS rDNA and β-tubulin data, Lichenologist, 45, 665, 10.1017/S0024282913000297
Stenroos, 2002, Phylogeny of the genus Cladonia s. lat. (Cladoniaceae, Ascomycetes) inferred from molecular, morphological, and chemical data, Cladistics, 18, 237, 10.1111/j.1096-0031.2002.tb00151.x
Stenroos, 2002, Phylogenetic hypotheses: Cladoniaceae, Stereocaulaceae, Baeomycetaceae, and Icmadophilaceae revisited, Mycol Prog, 1, 267, 10.1007/s11557-006-0024-9
Tschermak-Woess, 1980, Asterochloris phycobiontica, gen. et spec. nov., der phycobiont der Flechte Varicellaria carneonivea, Plant Syst Evol, 135, 279, 10.1007/BF00983192
White, 1990, Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics, PCR Protocols: A Guide to Methods and Applications, 315
Yahr, 2004, Strong fungal specificity and selectivity for algal symbionts in Florida scrub Cladonia lichens, Mol Ecol, 13, 3367, 10.1111/j.1365-294X.2004.02350.x