Molecular phylogeny and stripe pattern evolution in the cardinalfish genus Apogon
Tài liệu tham khảo
Albertson, 1999, Phylogeny of a rapidly evolving clade: the cichlid fishes of lake Malawi, East Africa, Proc. Natl. Acad. Sci. USA, 96, 5107, 10.1073/pnas.96.9.5107
Allender, 2003, Divergent selection during speciation of Lake Malawi cichlid fishes inferred from parallel radiations in nuptial coloration, Proc. Natl. Acad. Sci. USA, 100, 14074, 10.1073/pnas.2332665100
Barlow, 1972, The attitude of fish eye-lines in relation to body shape and to stripes and bars, Copeia, 1972, 4, 10.2307/1442777
Bellwood, 1996, The Eocene fishes of Monte Bolca: the earliest coral reef fish assemblage, Coral Reefs, 15, 11, 10.1007/BF01626074
Bremer, 1988, The limits of amino acid sequence data in angiosperm phylogenetic reconstruction, Evolution, 42, 795, 10.1111/j.1558-5646.1988.tb02497.x
Bremer, 1994, Branch support and tree stability, Cladistics, 10, 295, 10.1111/j.1096-0031.1994.tb00179.x
Brooks, 1994, Historical ecology as a research programme: scope, limitations and the future, 1
Endler, 1978, A predator’s view of animal color patterns, Evol. Biol., 11, 319
Endler, 1980, Natural selection on color patterns in Poecilia reticulata, Evolution, 34, 76, 10.1111/j.1558-5646.1980.tb04790.x
Endler, 1983, Natural and sexual selection on color patterns in poeciliid fishes, Environ. Biol. Fish., 9, 173, 10.1007/BF00690861
Endler, 1986
Endler, 1991, Variation in the appearance of guppy color patterns to guppies and their predators under different visual conditions, Vision Res., 31, 587, 10.1016/0042-6989(91)90109-I
Felsenstein, 1985, Confidence limits on phylogenetics: an approach using the bootstrap, Evolution, 39, 783, 10.1111/j.1558-5646.1985.tb00420.x
Fraser, 1972, Comparative osteology of the shallow water cardinal fishes (Perciformes: Apogonidae) with reference to the systematics and evolution of the family, Ichthyol. Bull., 34, 1
Fraser, 1998, A new species of cardinalfish (Apogonidae) from the Philippines, with comments on species of Apogon with six first dorsal spines, Proc. Biol. Soc. Wash., 111, 986
Fraser, 1985, A revision of the cardinalfish subgenera Pristiapogon and Zoramia of the Indo-Pacific region (Teleostei: Apogonidae), Smith Contr. Zool., 412, 1, 10.5479/si.00810282.412
Galis, 1998, Why are there so many cichlid species?, Trends Ecol. Evol., 13, 1, 10.1016/S0169-5347(97)01239-1
Gon, 1986, Family Apogonidae, 546
Gon, 1987, Redescription of Apogon (Ostorhinchus) fleurieu (Lacepède, 1802) with notes on its synonymy, Jpn. J. Ichthyol., 34, 138, 10.1007/BF02912408
Gon, 1995, Revision of the cardinalfish subgenus Lepidamia (Perciformes, Apogonidae, Apogon), Israel J. Zool., 41, 1
Haffter, 1996, Mutations affecting pigmentation and shape of the adult zebrafish, Dev. Genes Evol., 206, 260, 10.1007/s004270050051
Hanel, 2002, Phylogenetic relationships, evolution of broodcare behaviour, and geographic speciation in the wrasse tribe Labrini, J. Mol. Evol., 55, 776, 10.1007/s00239-002-2373-6
Harvey, 1991
Hayashi, 2002, Apogonidae, 750
Huelsenbeck, 1997, Phylogeny estimation and hypothesis testing using maximum likelihood, Annu. Rev. Ecol. Syst., 28, 437, 10.1146/annurev.ecolsys.28.1.437
Huelsenbeck, 2001, MRBAYES: bayesian inference of phylogenetic trees, Bioinformatics, 17, 754, 10.1093/bioinformatics/17.8.754
Johnson, 1995, Genetic control of adult pigment stripe development in zebrafish, Dev. Biol., 167, 27, 10.1006/dbio.1995.1004
Kawakami, 2000, Proviral insertion in the zebrafish hagoromo gene, encoding an F-box/WD40-repeat protein, cause stripe pattern anomalies, Curr. Biol., 10, 463, 10.1016/S0960-9822(00)00444-9
Kimura, 1980, A simple method for estimating evolutionary rate of base substitutions through comparative studies of nucleotide sequences, J. Mol. Evol., 16, 111, 10.1007/BF01731581
Kjer, 1994, Mosquito large subunit ribosomal RNA: simultaneous alignment of primary and secondary structure, Biochem. Biophys. Acta, 1217, 147
Kuiter, R.H., Kozawa, T., 1999. Pictorial guide to fishes of the Indo-West Pacific Apogonidae, ver. 2.0a. Aquatic Photographics and Anthis, Seaford and Okazaki.
Kumazawa, 1993, Sequence evolution of mitochondrial tRNA genes and deep-branch animal phylogenetics, J. Mol. Evol., 37, 380, 10.1007/BF00178868
Lord, 1995, Seed size and phylogeny in six temperate floras: constrains, niche conservatism, and adaptation, Am. Nat., 146, 349, 10.1086/285804
Mabuchi, 2003, Genetic comparison of two color-morphs of Apogon properuptus from Southern Japan, Ichthyol. Res., 50, 293, 10.1007/s10228-003-0171-9
Mabuchi, 2004, Genetic differentiation between two color-morphs of Apogon taeniophorus from Southern Japan, Ichthyol. Res., 51, 180, 10.1007/s10228-003-0201-7
Meyer, 1990, Monophyletic origin of Lake Victoria cichlid fishes suggested by mitochondrial DNA sequences, Nature, 347, 550, 10.1038/347550a0
Milinski, 1993, Predation risk and feeding behaviour, 285
Miya, 2000, Use of mitogenomic information in teleostean molecular phylogenetics: a tree-based exploration under the maximum-parsimony optimality criterion, Mol. Phylogenet. Evol., 17, 437, 10.1006/mpev.2000.0839
Myers, 1999
Nishida, 1991, Lake Tanganyika as an evolutionary reservoir of old lineages of East African cichlid fishes: inference from allozyme data, Experientia, 47, 974, 10.1007/BF01929896
Peterson, 1999, Conservatism of ecological niches in evolutionary time, Science, 285, 1265, 10.1126/science.285.5431.1265
Posada, 1998, Modeltest: testing the model of DNA substitution, Bioinformatics, 14, 817, 10.1093/bioinformatics/14.9.817
Rambaut, A., Charleston, M., 2001. TreeEdit. Ver. 1.0. University of Oxford, Oxford.
Ricklefs, 1992, Intercontinental correlation of geographical ranges suggests stasis in ecological traits of relict genera of temperate perennial herbs, Am. Nat., 139, 1305, 10.1086/285388
Ritchie, 1996, Mitochondrial phylogeny of Trematomid fishes (Nototheniidae, Perciformes) and the evolution of antarctic fish, Mol. Phylogenet. Evol., 5, 383, 10.1006/mpev.1996.0033
Sanderson, 1997, A nonparametric approach to estimate divergence times in the absence of rate constancy, Mol. Biol. Evol., 14, 1218, 10.1093/oxfordjournals.molbev.a025731
Seehausen, 1999, Evolution of colour patterns in East African cichlid fish, J. Evol. Biol., 12, 514, 10.1046/j.1420-9101.1999.00055.x
Schluter, 2000
Shimodaira, 1999, Multiple comparisons of log-likelihoods with applications to phylogenetic inference, Mol. Biol. Evol., 16, 1114, 10.1093/oxfordjournals.molbev.a026201
Snoeks, 2000, How well known is the ichthyodiversity of the large East African lakes?, vol. 31, 17
Streelman, 2002, Evolutionary history of the parrotfishes: biogeography, ecomorphology, and comparative diversity, Evolution, 56, 961, 10.1111/j.0014-3820.2002.tb01408.x
Sugie, 2004, The evolution of genes for pigmentation in African cichlid fishes, Gene, 343, 337, 10.1016/j.gene.2004.09.019
Swofford, 2001, Bias in phylogenetic estimation and its relevance to the choice between parsimony and likelihood methods, Syst. Biol., 50, 525, 10.1080/106351501750435086
Terai, 2002, Accelerated evolution of the surface amino acids in the WD-repeat domain encoded by the hagoromo gene in an explosively speciated lineage of East African cichlid fishes, Mol. Biol. Evol., 19, 574, 10.1093/oxfordjournals.molbev.a004114
Terai, 2003, The complexity of alternative splicing of hagoromo mRNAs is increased in an explosively speciated lineage in East African cichlids, Proc. Natl. Acad. Sci. USA, 100, 12798, 10.1073/pnas.2132833100
Thompson, 1997, The ClustalX-Windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 25, 4876, 10.1093/nar/25.24.4876
Verheyen, 2003, Origin of the superflock of cichlid fishes from Lake Victoria, East Africa, Science, 300, 325, 10.1126/science.1080699
Webb, 2002, Phylogenies and community ecology, Annu. Rev. Ecol. Syst., 33, 475, 10.1146/annurev.ecolsys.33.010802.150448
Westoby, 1995, On misinterpreting the “phylogenetic correction”, J. Ecol., 83, 531, 10.2307/2261605
Westoby, 1995, Further remarks on phylogenetic correction, J. Ecol., 83, 727, 10.2307/2261640