Molecular evolution of proteins involved in vertebrate phototransduction
Comparative Biochemistry and Physiology Part B: Biochemistry and Molecular Biology - Tập 133 - Trang 509-522 - 2002
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Abe, 1990, Analysis of the human, bovine and rat 33-kDa proteins and cDNA in retina and pineal gland, Gene, 91, 209, 10.1016/0378-1119(90)90090-E
Abdulaeva, 1995, The sequence of arrestins from rod and cone photoreceptors in the frogs Rana catesbeiana and Rana pipiens. Localization of gene transcripts by reverse-transcription polymerase chain reaction on isolated photoreceptors, Eur. J. Biochem., 234, 437, 10.1111/j.1432-1033.1995.437_b.x
Altschul, 1997, Gapped blast and psi-blast: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389
Arshavsky, 2002, G proteins and phototransduction, Annu. Rev. Physiol., 64, 153, 10.1146/annurev.physiol.64.082701.102229
Baehr, 1979, Isolation and characterization of cGMP phosphodiesterase from bovine rod outer segments, J. Biol. Chem., 254, 11677, 10.1016/S0021-9258(19)86536-5
Baylor, 1987, Photoreceptor signals and vision. Proctor Lecture, Invest. Opthalmol. Vis. Sci., 28, 34
Bönigk, 1993, Rod and cone photoreceptor cells express distinct genes for cGMP-gated channels, Neuron, 10, 865, 10.1016/0896-6273(93)90202-3
Cervetto, 1989, Extrusion of calcium from rod outer segments is driven by both sodium and potassium gradients, Nature, 337, 740, 10.1038/337740a0
Chen, 2001, Characterization of human GRK7 as a potential cone opsin kinase, Mol. Vis., 7, 305
Chen, 1994, Subunit 2 (or β) of retinal rod cGMP-gated cation channel is a component of the 240-kDa channel-associated protein and mediates Ca2+–calmodulin modulation, Proc. Natl. Acad. Sci. USA, 91, 11757, 10.1073/pnas.91.24.11757
Cook, 1987, Identification, purification, and functional reconstitution of the cyclic GMP-dependent channel from rod photoreceptors, Proc. Natl. Acad. Sci. USA, 84, 585, 10.1073/pnas.84.2.585
Cowan, 1998, High expression levels in cones of RGS9, the predominant GTPase accelerating protein of rods, Proc. Natl. Acad. Sci. USA, 95, 5351, 10.1073/pnas.95.9.5351
Craft, 1995, The arrestin superfamily: cone arrestins are a fourth family, FEBS Lett., 362, 247, 10.1016/0014-5793(95)00213-S
Craft, 1994, Cone arrestin identified by targeting expression of a functional family, J. Biol. Chem., 269, 4613, 10.1016/S0021-9258(17)41820-5
Cuenca, 1998, The localization of guanylyl cyclase-activating proteins in the mammalian retina, Invest. Ophthalmol. Vis. Sci., 39, 1243
Dartnall, 1983, Human visual pigments: microspectrophotometric results from the eyes of seven persons, Proc. R. Soc. Lond. B, 220, 115, 10.1098/rspb.1983.0091
Deterre, 1988, cGMP phosphodiesterase of retinal rods is regulated by two inhibitory subunits, Proc. Natl. Acad. Sci. USA, 85, 2424, 10.1073/pnas.85.8.2424
Dizhoor, 1991, Recoverin: a calcium-sensitive activator of retinal rod guanylate cyclase, Science, 251, 915, 10.1126/science.1672047
Dizhoor, 1994, The human photoreceptor membrane guanylyl cyclase, RetGC, is present in outer segments and is regulated by calcium and a soluble activator, Neuron, 12, 1345, 10.1016/0896-6273(94)90449-9
Dizhoor, 1995, Cloning, sequencing, and expression of a 24-kDa Ca2+-binding protein activating photoreceptor guanylyl cyclase, J. Biol. Chem., 270, 25200, 10.1074/jbc.270.42.25200
Ebrey, 2001, Vertebrate photoreceptors, Prog. Retin. Eye Res., 20, 49, 10.1016/S1350-9462(00)00014-8
Frings, 1995, Profoundly different calcium permeation and blockage determine the specific function of distinct cyclic nucleotide-gated channels, Neuron, 15, 169, 10.1016/0896-6273(95)90074-8
Gillespie, 1988, Characterization of a bovine cone photoreceptor phosphodiesterase purified by cyclic GMP–sepharose chromatography, J. Biol. Chem., 263, 8133, 10.1016/S0021-9258(18)68452-2
Gorczyca, 1995, Guanylyl cyclase activating protein. A calcium-sensitive regulator of phototransduction, J. Biol. Chem., 270, 22029, 10.1074/jbc.270.37.22029
Haeseleer, 1999, Molecular characterization of a third member of the guanylyl cyclase-activating protein subfamily, J. Biol. Chem., 274, 6526, 10.1074/jbc.274.10.6526
Hamm, 1996, Heterotrimeric G proteins, Cur. Opin. Cell Biol., 8, 189, 10.1016/S0955-0674(96)80065-2
Hargrave, 1992, Rhodopsin and phototransduction: a model system for G protein-linked receptors, Int. Rev. Cytol., 137B, 49
Hárosi, 1994, An analysis of two spectral properties of vertebrate visual pigments, Vision Res., 34, 1359, 10.1016/0042-6989(94)90134-1
Haynes, 1997, Modulation of rod, but not cone, cGMP-gated photoreceptor channels by calcium–calmodulin, Vis. Neurosci., 14, 233, 10.1017/S0952523800011378
He, 1998, RGS9, a GTPase accelerator for phototransduction, Neuron, 20, 95, 10.1016/S0896-6273(00)80437-7
Hestrin, 1990, Activation kinetics of retinal cones and rods: response to intense flashes of light, J. Neurosci., 10, 1967, 10.1523/JNEUROSCI.10-06-01967.1990
Hisatomi, 1991, Isolation and characterization of a lamprey rhodopsin cDNA, Biochem. Biophys. Res. Commun., 174, 1125, 10.1016/0006-291X(91)91537-M
Hisatomi, 1994, Phylogenetic relationships among vertebrate visual pigments, Vision Res., 34, 3097, 10.1016/0042-6989(94)90075-2
Hisatomi, 1997, Arrestins expressed in killifish photoreceptor cells, FEBS Lett., 411, 12, 10.1016/S0014-5793(97)00640-6
Hisatomi, 1998, A novel subtype of G-protein-coupled receptor kinase, GRK7, in teleost cone photoreceptors, FEBS Lett., 424, 159, 10.1016/S0014-5793(98)00162-8
Hisatomi, 1999, Three kinds of guanylate cyclase expressed in medaka photoreceptor cells in both retina and pineal organ, Biochem. Biophys. Res. Commun., 255, 216, 10.1006/bbrc.1999.0165
Howes, 1998, Gene array and expression of mouse retina guanylate cyclase activating proteins 1 and 2, Invest. Ophthalmol. Vis. Sci., 39, 867
Hsu, 1993, Modulation of the cGMP-gated channel of rod photoreceptor cells by calmodulin, Nature, 361, 76, 10.1038/361076a0
Imai, 1997, Single amino acid residue as a functional determinant of rod and cone visual pigments, Proc. Natl. Acad. Sci. USA, 94, 2322, 10.1073/pnas.94.6.2322
Imanishi, 1999, Two types of arrestins expressed in medaka rod photoreceptors, FEBS Lett., 462, 31, 10.1016/S0014-5793(99)01483-0
Imanishi, 2002, Characterization of retinal guanylate cyclase-activating protein 3 (GCAP3) from zebrafish to man, Eur. J. Neurosci., 15, 63, 10.1046/j.0953-816x.2001.01835.x
Inglese, 1992, Isoprenylation of a protein kinase. Requirement of farnesylation/a-carboxyl methylation for full enzymatic activity of rhodopsin kinase, J. Biol. Chem., 267, 1422, 10.1016/S0021-9258(18)45960-1
Inglese, 1992, Isoprenylation in regulation of signal transduction by G-protein-coupled receptor kinases, Nature, 359, 147, 10.1038/359147a0
Johnson, 1993, Cloning and expression of goldfish opsin sequences, Biochemistry, 32, 208, 10.1021/bi00052a027
Kachi, 1999, Detailed localization of photoreceptor guanylate cyclase activating protein-1 and -2 in mammalian retinas using light and electron microscopy, Exp. Eye Res., 68, 465, 10.1006/exer.1998.0629
Kaupp, 1989, Primary structure and functional expression from complementary DNA of the rod photoreceptor cyclic GMP-gated channel, Nature, 342, 762, 10.1038/342762a0
Kaupp, 1992, Role of cGMP and Ca2+ in vertebrate photoreceptor excitation and adaptation, Annu Rev. Physiol., 54, 153, 10.1146/annurev.ph.54.030192.001101
Kawamura, 1993, Rhodopsin phosphorylation as a mechanism of cyclic GMP phosphodiesterase regulation by S-modulin, Nature, 362, 855, 10.1038/362855a0
Kawamura, 1991, Calcium-dependent regulation of cyclic GMP phosphodiesterase by a protein from frog retinal rods, Nature, 349, 420, 10.1038/349420a0
Kawamura, 1993, Recoverin has S-modulin activity in frog rods, J. Biol. Chem., 268, 14579, 10.1016/S0021-9258(18)82369-9
Kawamura, 1996, Photoreceptor protein s26, a cone homologue of S-modulin in frog retina, J. Biol. Chem., 271, 21359, 10.1074/jbc.271.35.21359
Kobayashi, 2001, Identification of phosducins expressed in teleost retinas, FEBS Lett., 502, 117, 10.1016/S0014-5793(01)02670-9
Korenbrot, 1989, Cytoplasmic free calcium concentration in dark-adapted retinal rod outer segments, Vision Res., 29, 939, 10.1016/0042-6989(89)90108-9
Klenchin, 1995, Inhibition of rhodopsin kinase by recoverin. Further evidence for a negative feedback system in phototransduction, J. Biol. Chem., 270, 16147, 10.1074/jbc.270.27.16147
Krylov, 1999, Mapping sites in guanylyl cyclase activating protein-1 required for regulation of photoreceptor membrane guanylyl cyclases, J. Biol. Chem., 274, 10833, 10.1074/jbc.274.16.10833
Kuhn, 1984, Early steps in the light-triggered activation of the cyclic GMP enzymatic pathway in rod photoreceptors, Prog. Retinal Res., 3, 123, 10.1016/0278-4327(84)90007-5
Kuo, 1989, Isolation of a novel retina-specific clone (MEKA cDNA) encoding a photoreceptor soluble protein, Mol. Brain Res., 6, 1, 10.1016/0169-328X(89)90022-3
Lamb, 1995, Photoreceptor spectral sensitivities: common shape in the long-wavelength region, Vision Res., 35, 3083, 10.1016/0042-6989(95)00114-F
Laura, 1998, The kinase homology domain of retinal guanylyl cyclases 1 and 2 specifies the affinity and cooperativity of interaction with guanylyl cyclase-activating protein-2, Biochemistry, 37, 11264, 10.1021/bi9809674
Lee, 1984, Light-induced dephosphorylation of a 33-kDa protein in rod outer segments of rat retina, Biochemistry, 23, 1972, 10.1021/bi00304a014
Lerea, 1986, Identification of specific transducin α subunits in retinal rod and cone photoreceptors, Science, 234, 77, 10.1126/science.3529395
Lerea, 1989, A transducin is present in blue-, green-, and red-sensitive cone photoreceptors in the human retina, Neuron, 3, 367, 10.1016/0896-6273(89)90261-4
Liu, 1994, Ultrastructural localization of retinal guanylate cyclase in human and monkey retinas, Exp. Eye Res., 59, 761, 10.1006/exer.1994.1162
Lochrie, 1985, Sequence of the a subunit of photoreceptor G protein: homologies between transducin, ras, and elongation factors, Science, 228, 96, 10.1126/science.3856323
Lowe, 1995, Cloning and expression of a second photoreceptor-specific membrane retina guanylyl cyclase (RetGC), RetGC-2, Proc. Natl. Acad. Sci. USA, 92, 5535, 10.1073/pnas.92.12.5535
Ma, 2001, A visual pigment expressed in both rod and cone photoreceptors, Neuron, 32, 451, 10.1016/S0896-6273(01)00482-2
Matsuda, 1999, Role of carboxyl-terminal charges on S-modulin membrane affinity and inhibition of rhodopsin phosphorylation, Biochemistry, 38, 1310, 10.1021/bi982117u
Matthews, 1988, Photoreceptor light adaptation is mediated by cytoplasmic calcium concentration, Nature, 334, 67, 10.1038/334067a0
Medynski, 1985, Amino acid sequence of the alpha subunit of transducin deduced from the cDNA sequence, Proc. Natl. Acad. Sci. USA, 82, 4311, 10.1073/pnas.82.13.4311
Mendez, 2001, Role of guanylate cyclase-activating proteins (GCAPs) in setting the flash sensitivity of rod photoreceptors, Proc. Natl. Acad. Sci. USA, 98, 9948, 10.1073/pnas.171308998
Milam, 1993, Recoverin immunoreactivity in mammalian cone bipolar cells, Vis. Neurosci., 10, 1, 10.1017/S0952523800003175
Molday, 1990, The cGMP-gated cation channel of bovine rod photoreceptor cells is associated with a 240-kDa protein exhibiting immunochemical cross-reactivity with spectrin, J. Biol. Chem., 265, 18690, 10.1016/S0021-9258(17)44807-1
Murakami, 1993, X-arrestin: a new retinal arrestin mapping to the X chromosome, FEBS Lett., 334, 203, 10.1016/0014-5793(93)81712-9
Nakatani, 1988, Calcium and light adaptation in retinal rods and cones, Nature, 334, 69, 10.1038/334069a0
Nakatani, 1989, Sodium-dependent calcium extrusion and sensitivity regulation in retinal cones of the salamander, J. Physiol., 409, 525, 10.1113/jphysiol.1989.sp017511
Nathans, 1983, Isolation, sequence analysis, and intron–exon arrangement of the gene encoding bovine rhodopsin, Cell, 34, 807, 10.1016/0092-8674(83)90537-8
Nathans, 1986, Molecular genetics of human color vision: the genes encoding blue, green and red pigments, Science, 232, 193, 10.1126/science.2937147
Nir, 1992, S-antigen in rods and cones of the primate retina: different labeling patterns are revealed with antibodies directed against specific domains in the molecule, J. Histochem. Cytochem., 40, 343, 10.1177/40.3.1372630
Normann, 1974, Control of retinal sensitivity. I. Light and dark adaptation of vertebrate rods and cones, J. Gen. Physiol., 63, 37, 10.1085/jgp.63.1.37
Okano, 1992, Primary structures of chicken cone visual pigments: vertebrate rhodopsins have evolved out of cone visual pigments, Proc. Natl. Acad. Sci. USA, 89, 5932, 10.1073/pnas.89.13.5932
Ong, 1997, Gene structure and chromosome localization of the Gγc subunit of human cone G-protein (GNGT2), Genomics, 44, 101, 10.1006/geno.1997.4814
Palczewski, 1994, Structure and functions of arrestins, Protein Sci., 3, 1355, 10.1002/pro.5560030901
Palczewski, 1993, Identification of the N-terminal region in rhodopsin kinase involved in its interaction with rhodopsin, J. Biol. Chem., 268, 6004, 10.1016/S0021-9258(18)53419-0
Palczewski, 1994, Molecular cloning and characterization of retinal photoreceptor guanylyl cyclase-activating protein, Neuron, 13, 395, 10.1016/0896-6273(94)90355-7
Pepe, 2001, Recent advances in our understanding of rhodopsin and phototransduction, Prog. Retinal Eye Res., 20, 733, 10.1016/S1350-9462(01)00013-1
Picones, 1995, Permeability and interaction of Ca2+ with cGMP-gated ion channels differ in retinal rod and cone photoreceptors, Biophys. J., 69, 120, 10.1016/S0006-3495(95)79881-2
Polans, 1991, A photoreceptor calcium binding protein is recognized by autoantibodies obtained from patients with cancer-associated retinopathy, J. Cell. Biol., 112, 981, 10.1083/jcb.112.5.981
Polans, 1993, Recoverin, but not visinin, is an autoantigen in the human retina identified with a cancer-associated retinopathy, Invest. Ophthalmol. Vis. Sci., 34, 81
Prinsen, 2000, Molecular cloning and functional expression of the potassium-dependent sodium–calcium exchanger from human and chicken retinal cone photoreceptors, J. Neurosci., 20, 1424, 10.1523/JNEUROSCI.20-04-01424.2000
Pugh, 1997, Photoreceptor guanylate cyclases: a review, Biosci. Rep., 17, 429, 10.1023/A:1027365520442
Ratto, 1988, The concentration of cytosolic free calcium in vertebrate rod outer segments measured with fura-2, J. Neurosci., 8, 3240, 10.1523/JNEUROSCI.08-09-03240.1988
Ray, 1992, Cloning, expression, and crystallization of recoverin, a calcium sensor in vision, Proc. Natl. Acad. Sci. USA, 89, 5705, 10.1073/pnas.89.13.5705
Reilaender, 1992, Primary structure and functional expression of the Na/Ca, K-exchanger from bovine rod photoreceptors, EMBO J., 11, 1689, 10.1002/j.1460-2075.1992.tb05219.x
Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406
Sakuma, 1996, Immunolocalization of X-arrestin in human cone photoreceptors, FEBS Lett., 382, 105, 10.1016/0014-5793(96)00163-9
Seimiya, 1997, Primary structure and differential gene expression of three membrane forms of guanylyl cyclase found in the eye of the teleost Oryzias latipes, J. Biol. Chem., 272, 23407, 10.1074/jbc.272.37.23407
Semple-Rowland, 1999, Characterization of the chicken GCAP gene array and analyses of GCAP1, GCAP2, and GC1 gene expression in normal and rd chicken pineal, Mol. Vis., 5, 14
Seno, 1998, A possible role of RGS9 in phototransduction. A bridge between the cGMP-phosphodiesterase system and the guanylyl cyclase system, J. Biol. Chem., 273, 22169, 10.1074/jbc.273.35.22169
Shyjan, 1992, Molecular cloning of a retina-specific membrane guanylyl cyclase, Neuron, 9, 727, 10.1016/0896-6273(92)90035-C
Stryer, 1986, Cyclic GMP cascade of vision, Annu. Rev. Neurosci., 9, 87, 10.1146/annurev.ne.09.030186.000511
Tachibanaki, 2001, Low amplification and fast visual pigment phosphorylation as mechanisms characterizing cone photoresponses, Proc. Natl. Acad. Sci. USA, 98, 14044, 10.1073/pnas.241396898
Tanaba, 1985, Primary structure of the α-subunit of transducin and its relationship to ras proteins, Nature, 315, 242, 10.1038/315242a0
Taniguchi, 2001, Pinopsin expressed in retinal photoreceptors of a diurnal gecko, FEBS Lett., 496, 69, 10.1016/S0014-5793(01)02395-X
von Schantz, 1994, Expression of phototransduction cascade genes in the ground squirrel retina, Invest. Ophthalmol. Vis. Sci., 35, 3922
Watanabe, 1996, Isolation and analysis of the human MEKA gene encoding a retina-specific protein, Biochem. Biophys. Res. Commun., 170, 951, 10.1016/0006-291X(90)92183-Z
Weiss, 1998, The cloning of GRK7, a candidate cone opsin kinase, from cone- and rod-dominant mammalian retinas, Mol. Vis., 4, 27
Weiss, 2001, Species-specific differences in expression of G-protein-coupled receptor kinase (GRK) 7 and GRK1 in mammalian cone photoreceptor cells: implications for cone cell phototransduction, J. Neurosci., 21, 9175, 10.1523/JNEUROSCI.21-23-09175.2001
Wilkins, 1996, Regulation of the kinetics of phosducin phosphorylation in retinal rods, J. Biol. Chem., 271, 19232, 10.1074/jbc.271.32.19232
Willardson, 1996, Regulation of phosducin phosphorylation in retinal rods by Ca2+/calmodulin-dependent adenylyl cyclase, Proc. Natl. Acad. Sci. USA, 93, 1475, 10.1073/pnas.93.4.1475
Wistow, 1986, Sequence analysis of bovine retinal S-antigen. Relationships with a-transducin and G-proteins, FEBS Lett., 196, 23, 10.1016/0014-5793(86)80207-1
Yatsunami, 1985, GTPase of bovine rod outer segments: the amino acid sequence of the a subunit as derived from the cDNA sequence, Proc. Natl. Acad. Sci. USA, 82, 4311, 10.1073/pnas.82.13.4311
Yau, 1985, Light-induced reduction of cytoplasmic free calcium in retinal rod outer segment, Nature, 313, 579, 10.1038/313579a0
Yokoyama, 1995, Amino acid changes and wavelength absorption of visual pigments in vertebrates, Mol. Biol. Evol., 12, 53, 10.1093/oxfordjournals.molbev.a040190
Yokoyama, 2000, Molecular evolution of vertebrate visual pigments, Prog. Retinal Eye Res., 19, 385, 10.1016/S1350-9462(00)00002-1
Yokoyama, 1990, Convergent evolution of the red- and green-like visual pigment genes in fish, Astyanax fasciatus, and human, Proc. Natl. Acad. Sci. USA, 87, 9315, 10.1073/pnas.87.23.9315
Zhang, 1997, Molecular evolution of the rhodopsin gene of marine lamprey, Petromyzon marinus, Gene, 191, 1, 10.1016/S0378-1119(96)00864-5
Zhao, 1998, Molecular forms of human rhodopsin kinase (GRK1), J. Biol. Chem., 273, 5124, 10.1074/jbc.273.9.5124