Molecular evolution and genetic diversity analysis of SFTS virus based on next-generation sequencing

Biosafety and Health - Tập 3 - Trang 105-115 - 2021
Aqian Li1, Lin Liu1,2, Wei Wu1, Yang Liu1, Xiaoxia Huang1, Chuan Li1, Di Liu3, Jiandong Li1, Shiwen Wang1, Dexin Li1, Mifang Liang1,4
1Department of Viral Hemorrhagic Fever, National Institute for Viral Disease Control and Prevention, China CDC, Beijing 102206, China
2Suzhou Institute of Systems Medicine, Suzhou 215123, China
3Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China
4China CDC-WIV Joint Research Center for Emerging Diseases and Biosafety, Center for Biosafety Mega-Science, Chinese Academy of Sciences, Wuhan 430071, China

Tài liệu tham khảo

Yu, 2011, Fever with thrombocytopenia associated with a novel bunyavirus in China, N. Engl. J. Med., 364, 1523, 10.1056/NEJMoa1010095 Bao, 2011, A novel bunyavirus in China, N. Engl. J. Med., 365, 862, 10.1056/NEJMc1106000 Kim, 2013, Severe fever with thrombocytopenia syndrome, South Korea, 2012, Emerg. Infect. Dis., 19, 1892, 10.3201/eid1911.130792 Shimojima, 2013, Severe fever with thrombocytopenia syndrome in Japan, Uirusu, 63, 7, 10.2222/jsv.63.7 Choi, 2016, Severe fever with thrombocytopenia syndrome in South Korea, 2013–2015, PLoS Negl. Trop. Dis., 10, 10.1371/journal.pntd.0005264 Kato, 2016, Epidemiological and clinical features of severe fever with thrombocytopenia syndrome in Japan, 2013–2014, PLoS One, 11, 10.1371/journal.pone.0165207 Niu, 2013, Severe fever with thrombocytopenia syndrome virus among domesticated animals, China, Emerg. Infect. Dis., 19, 756, 10.3201/eid1905.120245 Liu, 2014, Epidemiologic features and environmental risk factors of severe fever with thrombocytopenia syndrome, Xinyang, China, PLoS Negl. Trop. Dis., 8, 10.1371/journal.pntd.0002820 Chen, 2013, A cluster of cases of human-to-human transmission caused by severe fever with thrombocytopenia syndrome bunyavirus, Int. J. Infect. Dis., 17, e206, 10.1016/j.ijid.2012.11.006 Gai, 2011, Person-to-person transmission of severe fever with thrombocytopenia syndrome bunyavirus through blood contact, Clin. Infect. Dis., 54, 249, 10.1093/cid/cir776 Liu, 2012, Person-to-person transmission of severe fever with thrombocytopenia syndrome virus, Vector-Borne Zoo. Dis., 12, 156, 10.1089/vbz.2011.0758 Tang, 2012, Human-to-human transmission of severe fever with thrombocytopenia syndrome bunyavirus through contact with infectious blood, J. Infect. Dis., 207, 736, 10.1093/infdis/jis748 He, 2012, Discovery of severe fever with thrombocytopenia syndrome bunyavirus strains originating from intragenic recombination, J. Virol., 86, 12426, 10.1128/JVI.01317-12 Liu, 2016, Molecular evolution and spatial transmission of severe fever with thrombocytopenia syndrome virus based on complete genome sequences, PLoS One, 11 Lam, 2013, Evolutionary and molecular analysis of the emergent severe fever with thrombocytopenia syndrome virus, Epidemics, 5, 1, 10.1016/j.epidem.2012.09.002 Fu, 2016, Phylogeographic analysis of severe fever with thrombocytopenia syndrome virus from Zhoushan Islands, China: implication for transmission across the ocean, Sci. Rep., 6, 19563, 10.1038/srep19563 Huang, 2014, The evolutionary history and spatiotemporal dynamics of the fever, thrombocytopenia and leukocytopenia syndrome virus (FTLSV) in China, PLoS Negl. Trop. Dis., 8, 10.1371/journal.pntd.0003237 Liu, 2016, Molecular evolution of fever, thrombocytopenia and leukocytopenia virus (FTLSV) based on whole-genome sequences, Infect. Genet. Evol., 39, 55, 10.1016/j.meegid.2015.12.022 Yoshikawa, 2015, Phylogenetic and geographic relationships of severe fever with thrombocytopenia syndrome virus in China, South Korea, and Japan, J. Infect. Dis., 212, 889, 10.1093/infdis/jiv144 McMullan, 2012, A new phlebovirus associated with severe febrile illness in Missouri, N. Engl. J. Med., 367, 834, 10.1056/NEJMoa1203378 Wang, 2014, Novel phlebovirus with zoonotic potential isolated from ticks, Australia, Emerg. Infect. Dis., 20, 1040, 10.3201/eid2006.140003 Mourya, 2014, Malsoor virus, a novel bat phlebovirus, is closely related to severe fever with thrombocytopenia syndrome virus and heartland virus, J. Virol., 88, 3605, 10.1128/JVI.02617-13 Shi, 2017, Migration, recombination, and reassortment are involved in the evolution of severe fever with thrombocytopenia syndrome bunyavirus, Infect. Genet. Evol., 47, 109, 10.1016/j.meegid.2016.11.015 Leblebicioglu, 2014, Role of migratory birds in spreading Crimean-Congo hemorrhagic fever, Turkey, Emerg. Infect. Dis., 20, 1331, 10.3201/eid2008.131547 Sibold, 1999, Recombination in Tula hantavirus evolution: analysis of genetic lineages from Slovakia, J. Virol., 73, 667, 10.1128/JVI.73.1.667-675.1999 Chare, 2003, Phylogenetic analysis reveals a low rate of homologous recombination in negative-sense RNA viruses, J. Gen. Virol., 84, 2691, 10.1099/vir.0.19277-0 Lv, 2017, Novel sub-lineages, recombinants and reassortants of severe fever with thrombocytopenia syndrome virus, Tick Tick-Borne Dis., 8, 385, 10.1016/j.ttbdis.2016.12.015 NIID, 2019, Severe fever with thrombocytopenia syndrome (SFTS) in Japan, as of June 2019, IASR, 40, 111 KCDC Li, 2018, Epidemiological analysis of severe fever with thrombocytopenia syndrome from 2010 to 2017, China, Chin. J. Emerg. Resusc. Disast. Med., 13, 1076 Adams, 2017, Changes to taxonomy and the international code of virus classification and nomenclature ratified by the international committee on taxonomy of viruses, Arch. Virol., 162, 2505, 10.1007/s00705-017-3358-5 Shen, 2018, A novel tick-borne phlebovirus, closely related to severe fever with thrombocytopenia syndrome virus and heartland virus, is a potential pathogen, Emerg. Microb. Infect., 7, 1, 10.1038/s41426-018-0093-2 Swei, 2013, The genome sequence of Lone Star virus, a highly divergent bunyavirus found in the Amblyomma americanum tick, PLoS One, 8, 10.1371/journal.pone.0062083