Molecular characterization of the multi-drug resistant Myroides odoratimimus isolates: a whole genome sequence-based study to confirm carbapenem resistance

Esra Yartaşı1, Rıza Durmaz2, Oğuz Arı3, İpek MUMCUOĞLU1, Bedia Dinç1
1Department of Clinical Microbiology, Ankara Bilkent City Hospital, University of Health Sciences, Ankara, Turkey
2Department of Clinical Microbiology, Faculty of Medicine, Ankara Yildirim Beyazit University, Ankara, Turkey
3Central Research and Application Center, Ankara Yildirim Beyazit University, Ankara, Turkey

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Al-Bayssari C, Gupta SK, Dabboussi F et al (2015) MUS-2, a novel variant of the chromosome-encoded β-lactamase MUS-1, from Myroides odoratimimus. New Microbes New Infect 7:67–71. https://doi.org/10.1016/j.nmni.2015.06.007

Ambler RP (1980) The structure of beta-lactamases. Philos Trans R Soc Lond B Biol Sci 289:321–331. https://doi.org/10.1098/rstb.1980.0049

Benedetti P, Rassu M, Pavan G et al (2011) Septic shock, pneumonia, and soft tissue infection due to Myroides odoratimimus: report of a case and review of Myroides infections. Infection 39:161–165. https://doi.org/10.1007/s15010-010-0077-1

Booth SJ (2014) Chryseobacterium related genera infections☆. Elsevier Inc

Chang JC, Hsueh PR, Wu JJ et al (1997) Antimicrobial susceptibility of flavobacteria as determined by agar dilution and disk diffusion methods. Antimicrob Agents Chemother 41:1301–1306. https://doi.org/10.1128/aac.41.6.1301

Crum-Cianflone NF, Matson RW, Ballon-Landa G (2014) Fatal case of necrotizing fasciitis due to Myroides odoratus. Infection 42:931–935. https://doi.org/10.1007/s15010-014-0626-0

Cui C-Y, Chen Q, He Q et al (2022) Transferability of tigecycline resistance: characterization of the expanding Tet(X) family. Wires Mech Dis 14:e1538. https://doi.org/10.1002/wsbm.1538

Dallenne C, Da Costa A, Decré D et al (2010) Development of a set of multiplex PCR assays for the detection of genes encoding important beta-lactamases in Enterobacteriaceae. J Antimicrob Chemother 65:490–495. https://doi.org/10.1093/jac/dkp498

Dharne MS, Gupta AK, Rangrez AY et al (2008) Antibacterial activities of multi drug resistant Myroides odoratimimus bacteria isolated from adult flesh flies (Diptera: Sarcophagidae) are independent of metallo beta-lactamase gene. Braz J Microbiol 39:397–404. https://doi.org/10.1590/S1517-83822008000200035

Durmaz R, Otlu B, Koksal F et al (2009) The optimization of a rapid pulsed-field gel electrophoresis protocol for the typing of Acinetobacter baumannii, Escherichia coli and Klebsiella spp. Jpn J Infect Dis 62:372–377

EUCAST (2021) European Committee on Antimicrobial Susceptibility Testing Breakpoint tables for interpretation of MICs and zone diameters, version 11.0. http://www.eucast.org/clinical_breakpoints/. Accessed 30 Apr 2021

Faraz A, Fathima K, Kazmi SY et al (2022) Recurrent urinary tract infection in a renal transplant patient by pan-resistant Myroides spp. J Coll Physicians Surg Pak 32:S34–S36. https://doi.org/10.29271/jcpsp.2022.Supp1.S34

Feßler AT, Wang Y, Wu C, Schwarz S (2018) Mobile macrolide resistance genes in staphylococci. Plasmid 99:2–10. https://doi.org/10.1016/j.plasmid.2018.05.001

Fraser SL, Jorgensen JH (1997) Reappraisal of the antimicrobial susceptibilities of Chryseobacterium and Flavobacterium species and methods for reliable susceptibility testing. Antimicrob Agents Chemother 41:2738–2741. https://doi.org/10.1128/aac.41.12.2738

Girdhar A, Singh A, Usman F, Bajwa A (2013) A rare cause of pneumonia and septic shock in an immunocompetent host. Chest 144:200A. https://doi.org/10.1378/chest.1684235

Gunzer F, Rudolph WW, Bunk B et al (2018) Whole-genome sequencing of a large collection of Myroides odoratimimus and Myroides odoratus isolates and antimicrobial susceptibility studies. Emerg Microbes Infect 7. https://doi.org/10.1038/s41426-018-0061-x

Holmes B, Snell JJS, Lapage SP (1979) Flavobacterium odoratum: a species resistant to a wide range of antimicrobial agents. J Clin Pathol 32:73–77. https://doi.org/10.1136/jcp.32.1.73

Hooton TM, Bradley SF, Cardenas DD et al (2010) Diagnosis, prevention, and treatment of catheter-aassociated urinary tract infection in adults: 2009 international clinical practice guidelines from the infectious diseases society of America. Clin Infect Dis 50:625–663. https://doi.org/10.1086/650482

Hu SH, Yuan SX, Qu H et al (2016) Antibiotic resistance mechanisms of Myroides sp. J Zhejiang Univ Sci B 17:188–199. https://doi.org/10.1631/jzus.B1500068

Hu S, Jiang T, Zhou Y et al (2017) Genomic analysis of the multi-drug-resistant clinical isolate Myroides odoratimimus PR63039. Mol Genet Genomics 292:133–144. https://doi.org/10.1007/s00438-016-1261-5

Hu S, Cao L, Wu Y et al (2019) Comparative genomic analysis of Myroides odoratimimus isolates. Microbiologyopen 8:1–14. https://doi.org/10.1002/mbo3.634

Ismail SJ, Mahmoud SS (2018) First detection of New Delhi metallo-β-lactamases variants (NDM-1, NDM-2) among Pseudomonas aeruginosa isolated from Iraqi hospitals. Iran J Microbiol 10:98–103

Ktari S, Mnif B, Koubaa M et al (2012) Nosocomial outbreak of Myroides odoratimimus urinary tract infection in a Tunisian hospital. J Hosp Infect 80:77–81. https://doi.org/10.1016/j.jhin.2011.09.010

Kurt AF, Mete B, Houssein FM et al (2022) A pan-resistant Myroides odoratimimus catheter-related bacteremia in a COVID-19 patient and review of the literature. Acta Microbiol Immunol Hung. https://doi.org/10.1556/030.2022.01702

Kutlu HH, Avcı M, Dal T et al (2020) A healthcare-associated outbreak of urinary tract infections due to myroides odoratimimus. Jpn J Infect Dis 73:421–426. https://doi.org/10.7883/yoken.JJID.2019.536

Lavergne S, Gaufin T, Richman D (2019) Myroides injenensis bacteremia and severe cellulitis. Open Forum Infect Dis 6:1–5. https://doi.org/10.1093/ofid/ofz282

Licker M, Sorescu T, Rus M et al (2018) Extensively drug-resistant Myroides odoratimimus - a case series of urinary tract infections in immunocompromised patients. Infect Drug Resist 11:743–749. https://doi.org/10.2147/IDR.S161069

Lorenzin G, Piccinelli G, Carlassara L et al (2018) Myroides odoratimimus urinary tract infection in an immunocompromised patient: an emerging multidrug-resistant micro-organism. Antimicrob Resist Infect Control 7:1–6. https://doi.org/10.1186/s13756-018-0391-4

Lu Y, Xia W, Zhang X et al (2020) A confirmed catheter-related blood stream infection (CRBSI) in an immunocompetent patient due to Myroides odoratimimus: case report and literature review. Infect Drug Resist 13:139–144. https://doi.org/10.2147/IDR.S234778

Ma Q, Zhu C, Yao M et al (2021) Correlation between the sulfamethoxazole-trimethoprim resistance of Shigella flexneri and the sul genes. Medicine 100:e24970. https://doi.org/10.1097/MD.0000000000024970

Mammeri H, Bellais S, Nordmann P (2002) Chromosome-encoded β-lactamases TUS-1 and MUS-1 from Myroides odoratus and Myroides odoratimimus (formerly Flavobacterium odoratum), new members of the lineage of molecular subclass B1 metalloenzymes. Antimicrob Agents Chemother 46:3561–3567. https://doi.org/10.1128/AAC.46.11.3561-3567.2002

Maraki S, Sarchianaki E, Barbagadakis S (2012) Myroides odoratimimus soft tissue infection in an immunocompetent child following a pig bite: case report and literature review. Braz J Infect Dis 16:390–392. https://doi.org/10.1016/j.bjid.2012.06.004

Ming DS, Chen QQ, Chen XT (2017) Analysis of resistance genes in pan-resistant Myroides odoratimimus clinical strain PR63039 using whole genome sequencing. Microb Pathog 112:164–170. https://doi.org/10.1016/j.micpath.2017.09.012

Pérez-Lazo G, Morales-Moreno A, Soto-Febres F et al (2020) First report of Myroides phaeus bacteraemia identified by polymerase chain reaction and genetic sequencing. IDCases 19:2. https://doi.org/10.1016/j.idcr.2020.e00695

Poirel L, Walsh TR, Cuvillier V, Nordmann P (2011) Multiplex PCR for detection of acquired carbapenemase genes. Diagn Microbiol Infect Dis 70:119–123. https://doi.org/10.1016/j.diagmicrobio.2010.12.002

Pompilio A, Galardi G, Gherardi G et al (2018) Infection of recurrent calcaneal ulcer caused by a biofilm-producer Myroides odoratimimus strain. Folia Microbiol (praha) 63:203–207. https://doi.org/10.1007/s12223-017-0552-5

Ranjan M, Karade S, Rahi P et al (2017) Urosepsis due to multi drug resistant Myroides odoratimimus: a case report. Int J Curr Microbiol Appl Sci 6:1930–1935. https://doi.org/10.20546/ijcmas.2017.608.228

Rebmann T, Greene LR (2010) Preventing catheter-associated urinary tract infections: an executive summary of the Association for Professionals in Infection Control and Epidemiology Inc, Elimination Guide. Am J Infect Control 38:644–646. https://doi.org/10.1016/j.ajic.2010.08.003

Schröttner P, Rudolph WW, Eing BR et al (2014) Comparison of VITEK2, MALDI-TOF MS, and 16S rDNA sequencing for identification of Myroides odoratus and Myroides odoratimimus. Diagn Microbiol Infect Dis 79:155–159. https://doi.org/10.1016/j.diagmicrobio.2014.02.002

Stepanović S, Vuković D, Hola V et al (2007) Quantification of biofilm in microtiter plates: overview of testing conditions and practical recommendations for assessment of biofilm production by staphylococci. APMIS 115:891–899. https://doi.org/10.1111/j.1600-0463.2007.apm_630.x

Tenover FC, Arbeit RD, Goering RV et al (1995) Interpreting chromosomal DNA restriction patterns produced by pulsed-field gel electrophoresis: criteria for bacterial strain typing. J Clin Microbiol 33:2233–2239. https://doi.org/10.1128/jcm.33.9.2233-2239.1995

Vancanneyt M, Segers P, Torck U et al (1996) Reclassification of flavobacterium odoratum (Stutzer 1929) strains to a new genus, Myroides, as Myroides odoratus comb. nov. and Myroides odoratimimus sp. nov. Int J Syst Bacteriol 46:926–932. https://doi.org/10.1099/00207713-46-4-926

Wang P, Chen S, Guo Y et al (2011) Occurrence of false positive results for the detection of carbapenemases in carbapenemase-negative Escherichia coli and Klebsiella pneumoniae isolates. PLoS ONE 6:e26356. https://doi.org/10.1371/journal.pone.0026356

Willems P, Muller J, Verhaegen J et al (2017) How to treat a fulminant erysipelas and sepsis caused by Myroides odoratimimus: case report and literature review. Acta Clin Belg: Int J Clin Lab Med 72:331–335. https://doi.org/10.1080/17843286.2016.1245173

Yaǧci A, Çerikçioǧlu N, Kaufmann ME et al (2000) Molecular typing of Myroides odoratimimus (Flavobacterium odoratum) urinary tract infections in a Turkish Hospital. Eur J Clin Microbiol Infect Dis 19:731–732. https://doi.org/10.1007/s100960070001

Yang S, Liu Q, Shen Z et al (2020) Molecular epidemiology of myroides odoratimimus in nosocomial Catheter-related infection at a general hospital in China. Infect Drug Resist 13:1981–1993. https://doi.org/10.2147/IDR.S251626