Molecular characterization of novel Bradyrhizobium strains nodulating Eriosema chinense and Flemingia vestita , important unexplored native legumes of the sub-Himalayan region (Meghalaya) of India

Appunu, 2008, Genetic diversity of native bradyrhizobia isolated from soybeans (Glycine max L.) in different agricultural-ecological-climatic regions of India, Appl. Environ. Microbiol., 74, 5991, 10.1128/AEM.01320-08 Appunu, 2009, Vigna mungo, V. radiata and V. unguiculata plants sampled in different agronomical-ecological-climatic regions of India are nodulated by Bradyrhizobium yuanmingense, Syst. Appl. Microbiol., 32, 460, 10.1016/j.syapm.2009.05.005 Appunu, 2009, A significant proportion of indigenous rhizobia from India associated with soybean (Glycine max L.) distinctly belong to Bradyrhizobium and Ensifer genera, Biol. Fertil. Soils, 46, 57, 10.1007/s00374-009-0405-8 Bjourson, 1992, Combined subtraction hybridization and polymerase chain reaction amplification procedure for isolation of strain-specific Rhizobium DNA sequences, Appl. Environ. Microbiol., 58, 2296, 10.1128/AEM.58.7.2296-2301.1992 Bourebaba, 2016, Diversity of Bradyrhizobium strains nodulating Lupinus micranthus on both sides of the Western Mediterranean: Algeria and Spain, Syst. Appl. Microbiol., 39, 266, 10.1016/j.syapm.2016.04.006 Chahboune, 2011, Bradyrhizobium cytisi sp. nov., isolated from effective nodules of Cytisus villosus, Int. J. Syst. Evol. Microbiol., 61, 2922, 10.1099/ijs.0.027649-0 Chahboune, 2012, Bradyrhizobium rifense sp. nov. isolated from effective nodules of Cytisus villosus grown in the Moroccan Rif, Syst. Appl. Microbiol., 35, 302, 10.1016/j.syapm.2012.06.001 Chaintreuil, 2001, Characterization of the common nodulation genes of the photosynthetic Bradyrhizobium sp. ORS285 reveals the presence of a new insertion sequence upstream of nodA, FEMS. Microbiol. Lett., 194, 83, 10.1111/j.1574-6968.2001.tb09450.x Chang, 2011, Bradyrhizobium lablabi sp. nov., isolated from effective nodules of Lablab purpureus and Arachis hypogaea, Int. J. Syst. Evol. Microbiol., 61, 2496, 10.1099/ijs.0.027110-0 Delamuta, 2015, Bradyrhizobium tropiciagri sp. nov. and Bradyrhizobium embrapense sp. nov., nitrogen-fixing symbionts of tropical forage legumes, Int. J. Syst. Evol. Microbiol., 65, 4424, 10.1099/ijsem.0.000592 Durán, 2014, Bradyrhizobium paxllaeri sp. nov. and Bradyrhizobium icense sp. nov., nitrogen-fixing rhizobial symbionts of Lima bean (Phaseolus lunatus L.) in Peru, Int. J. Syst. Evol. Microbiol., 64, 2072, 10.1099/ijs.0.060426-0 Durán, 2014, Bradyrhizobium valentinum sp. nov., isolated from effective nodules of Lupinus mariae-josephae, a lupine endemic of basic-lime soils in Eastern Spain, Syst. Appl. Microbiol., 37, 336, 10.1016/j.syapm.2014.05.002 Felsenstein, 1981, Evolutionary trees from DNA-sequences-a maximum likelihood approach, J. Mol. Evol., 17, 368, 10.1007/BF01734359 Fonseca, 2012, Nodulation in Dimorphandra wilsonii Rizz (Caesalpinioideae), a threatened species native to the Brazilian Cerrado, PLoS One, 7, e49520, 10.1371/journal.pone.0049520 Gaunt, 2001, Phylogenies of atpD and recA support the small subunit rRNA-based classification of rhizobia, Int. J. Syst. Evol. Microbiol., 51, 2037, 10.1099/00207713-51-6-2037 Gehlot, 2012, Nodulation of legumes from the Thar desert of India and molecular characterization of their rhizobia, Plant Soil, 357, 227, 10.1007/s11104-012-1143-5 Gehlot, 2013, An invasive Mimosa in India does not adopt the symbionts of its native relatives, Ann. Bot., 112, 179, 10.1093/aob/mct112 Grönemeyer, 2015, Bradyrhizobium subterraneum sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of groundnuts, Int. J. Syst. Evol. Microbiol., 65, 3241, 10.1099/ijsem.0.000403 Grönemeyer, 2015, Bradyrhizobium kavangense sp. nov., a symbiotic nitrogen-fixing bacterium from root nodules of traditional Namibian pulses, Int. J. Syst. Evol. Microbiol., 65, 4886, 10.1099/ijsem.0.000666 Grönemeyer, 2016, Bradyrhizobium vignae sp. nov., a nitrogen-fixing symbiont isolated from effective nodules of Vigna and Arachis, Int. J. Syst. Evol. Microbiol., 66, 62, 10.1099/ijsem.0.000674 Guerrouj, 2013, Definition of a novel symbiovar (sv retamae) within Bradyrhizobium retamae sp. nov., nodulating Retama sphaerocarpa and Retama monosperma, Syst. Appl. Microbiol., 36, 218, 10.1016/j.syapm.2013.03.001 Hall, 1999, BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT, Nucleic Acids Symp. Ser., 41, 95 Helene, 2015, Bradyrhizobium viridifuturi sp. nov., encompassing nitrogen-fixing symbionts of legumes used for green manure and environmental services, Int. J. Syst. Evol. Microbiol., 65, 4441, 10.1099/ijsem.0.000591 Kumar, 2016, MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets, Mol. Biol. Evol., 33, 1870, 10.1093/molbev/msw054 Kuykendall, 1992, Genetic diversity in Bradyrhizobium japonicum Jordan 1982 and a proposal for Bradyrhizobium elkanii sp. nov, Can. J. Microbiol., 38, 501, 10.1139/m92-082 Laguerre, 2001, Classification of rhizobia based on nodC and nifH gene analysis reveals a close phylogenetic relationship among Phaseolus vulgaris symbionts, Microbiology, 147, 981, 10.1099/00221287-147-4-981 Li, 2015, Bradyrhizobium guangdongense sp. nov. and Bradyrhizobium guangxiense sp. nov., isolated from effective nodules of peanut, Int. J. Syst. Evol. Microbiol., 65, 4655, 10.1099/ijsem.0.000629 Lu, 2014, Bradyrhizobium ganzhouense sp. nov., an effective symbiotic bacterium isolated from Acacia melanoxylon R. R. Br. nodules, Int. J. Syst. Evol. Microbiol., 64, 1900, 10.1099/ijs.0.056564-0 Martens, 2008, Advantages of multilocus sequence analysis for taxonomic studies: a case study using 10 housekeeping genes in the genus Ensifer (including former Sinorhizobium), Int. J. Syst. Evol. Microbiol., 58, 200, 10.1099/ijs.0.65392-0 Michel, 2017, Bradyrhizobium centrolobii and Bradyrhizobium macuxiense sp. nov. isolated from Centrolobium paraense grown in soil of Amazonia, Brazil, Arch. Microbiol., 199, 657, 10.1007/s00203-017-1340-y Moulin, 2004, Phylogenetic analyses of symbiotic nodulation genes support vertical and lateral gene co-transfer within the Bradyrhizobium genus, Mol. Phylogenet. Evol., 30, 720, 10.1016/S1055-7903(03)00255-0 Myers, 2000, Biodiversity hotspots for conservation priorities, Nature, 403, 853, 10.1038/35002501 Parker, 2015, The spread of Bradyrhizobium lineages across host legume clades: from Abarema to Zygia, Microb. Ecol., 69, 630, 10.1007/s00248-014-0503-5 Prasad, 2013, Quality control standardization and antioxidant activity of roots from Eriosema chinense, Pharmacogn. J., 5, 149, 10.1016/j.phcgj.2013.07.007 Ramírez-Bahena, 2009, Bradyrhizobium pachyrhizi sp. nov. and Bradyrhizobium jicamae sp. nov., isolated from effective nodules of Pachyrhizus erosus, Int. J. Syst. Evol. Microbiol., 59, 1929, 10.1099/ijs.0.006320-0 Ramírez-Bahena, 2016, Bradyrhizobium centrosemae (symbiovar centrosemae) sp. nov., Bradyrhizobium americanum (symbiovar phaseolarum) sp. nov. and a new symbiovar (tropici) of Bradyrhizobium viridifuturi establish symbiosis with Centrosema species native to America, Syst. Appl. Microbiol., 39, 378, 10.1016/j.syapm.2016.06.001 Richardson, 1995, Differentiation of Rhizobium strains using the polymerase chain reaction with random and directed primers, Soil Biol. Biochem., 27, 515, 10.1016/0038-0717(95)98626-Y Risal, 2010, Genetic diversity of native soybean bradyrhizobia from different topographical regions along the southern slopes of the Himalayan Mountains in Nepal, Syst. Appl. Microbiol., 33, 416, 10.1016/j.syapm.2010.06.008 Rivas, 2009, Multilocus sequence analysis of the genus Bradyrhizobium, Syst. Appl. Microbiol., 32, 101, 10.1016/j.syapm.2008.12.005 Sankhla, 2017, Molecular characterization of nitrogen fixing microsymbionts from root nodules of Vachellia (Acacia) jacquemontii, a native legume from the Thar Desert of India, Plant Soil, 410, 21, 10.1007/s11104-016-2838-9 Silva, 2014, Bradyrhizobium manausense sp. nov., isolated from effective nodules of Vigna unguiculata grown in Brazilian Amazonian rainforest soils, Int. J. Syst. Evol. Microbiol., 64, 2358, 10.1099/ijs.0.061259-0 Somasegaran, 1994 Sprent, 2017, Biogeography of nodulated legumes and their nitrogen fixing symbionts, New Phytol., 215, 40, 10.1111/nph.14474 Stepkowski, 2003, The variable part of the dnaK gene as an alternative marker for phylogenetic studies of rhizobia and related alpha Proteobacteria, Syst. Appl. Microbiol., 26, 483, 10.1078/072320203770865765 Tak, 2016, Multi locus sequence analysis and symbiotic characterization of novel Ensifer strains nodulating Tephrosia spp. in the Indian Thar Desert, Syst. Appl. Microbiol., 39, 534, 10.1016/j.syapm.2016.08.002 Tandon, 2003, Anthelmintic efficacy of Flemingia vestita (Fabaceae): effect of genistein on glycogen metabolism in the cestode, Raillietina echinobothrida, Parasitol. Int., 52, 179, 10.1016/S1383-5769(03)00006-0 Thompson, 1994, CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice, Nucleic Acids Res., 22, 4673, 10.1093/nar/22.22.4673 Turner, 2000, The glutamine synthetases of rhizobia: phylogenetics and evolutionary implications, Mol. Biol. Evol., 17, 309, 10.1093/oxfordjournals.molbev.a026311 Vinuesa, 2005, Int. J. Syst. Evol. Microbiol., 55, 569, 10.1099/ijs.0.63292-0 Vinuesa, 2005, Population genetics and phylogenetic inference in bacterial molecular systematics: the roles of migration and recombination in Bradyrhizobium species cohesion and delineation, Mol. Phylogenet. Evol., 34, 29, 10.1016/j.ympev.2004.08.020 Vinuesa, 2008, Multilocus sequence analysis for assessment of the biogeography and evolutionary genetics of four Bradyrhizobium species that nodulate soybeans on the Asiatic continent, Appl. Environ. Microbiol., 74, 6987, 10.1128/AEM.00875-08 Wang, 2013, Bradyrhizobium daqingense sp. nov., isolated from soybean nodules, Int. J. Syst. Evol. Microbiol., 63, 616, 10.1099/ijs.0.034280-0 Wang, 2013, Bradyrhizobium arachidis sp. nov., isolated from effective nodules of Arachis hypogaea grown in China, Syst. Appl. Microbiol., 36, 101, 10.1016/j.syapm.2012.10.009 Weisburg, 1991, 16S ribosomal DNA amplification for phylogenetic study, J. Bacteriol., 173, 697, 10.1128/jb.173.2.697-703.1991 Xu, 1995, Bradyrhizobium liaoningense sp. nov., isolated from the root nodules of soybeans, Int. J. Syst. Evol. Microbiol., 45, 706 Yao, 2002, Characterization of rhizobia that nodulate legume species of the genus Lespedeza and description of Bradyrhizobium yuanmingense sp. nov, Int. J. Syst. Evol. Microbiol., 52, 2219 Yao, 2015, Bradyrhizobium erythrophlei sp. nov. and Bradyrhizobium ferriligni sp. nov., isolated from effective nodules of Erythrophleum fordii, Int. J. Syst. Evol. Microbiol., 65, 1831, 10.1099/ijs.0.000183 Yu, 2014, Bradyrhizobium ottawaense sp. nov., a symbiotic nitrogen fixing bacterium from root nodules of soybeans in Canada, Int. J. Syst. Evol. Microbiol., 64, 3202, 10.1099/ijs.0.065540-0 Zhang, 2012, Bradyrhizobium huanghuaihaiense sp. nov., an effective symbiotic bacterium isolated from soybean (Glycine max L.) nodules, Int. J. Syst. Evol. Microbiol., 62, 1951, 10.1099/ijs.0.034546-0 Zilli, 2014, Bradyrhizobium neotropicale sp. nov., isolate from effective nodules of Centrolobium paraense, Int. J. Syst. Evol. Microbiol., 64, 3950, 10.1099/ijs.0.065458-0