Molecular characterization of newS-RNases (‘S31’ and ‘S32’) in apple (Malus ×domestica Borkh.)’) in apple (Malus ×domestica Borkh.)
Tóm tắt
Apple exhibits gametophytic self-incompatibility (GSI) that is controlled by the multiallelic S-locus. This S-locus encodes polymorphicS ribonuclease (S-RNase) for the pistil-part 5 determinant. Information aboutS-genotypes is important when selecting pollen donors for fruit production and breeding of new cultivars. We determined the 5-genotypes of ‘Charden’ (S2S3S4), ‘Winesap’ (S1S28), ‘York Imperial’ (S2S31), ‘Stark Earliblaze’ (S1S28), and ‘Burgundy’ (S20S32), byS-RNase sequencing and S-allele-specific PCR analysis. Two newS-RNases, S31 and S32, were also identified from ‘York Imperial’ and ‘Burgundy’, respectively. These newS-alleles contained the conserved eight cysteine residues and two histidine residues essential for RNase activity. Whereas S31 showed high similarity to S20 (94%), S32 exhibited 58% (to S24) to 76% (to S25) similarity in the exon regions. We designed newS-allele-specific primers for amplifying S31- and S32-RNasc-specific fragments; these can serve as specific gene markers. We also rearranged the apple S-allele numbers containing those newS-RNases. They should be useful, along with anS-RNase-based PCR system, in determining S-genotypes and analyzing new alleles from apple cultivars.
Tài liệu tham khảo
Boškoviæ R, Tobutt KR (1999) Correlation of stylar ribonuclease isoenzymes with incompatibility alleles in apple. Euphytica107: 29–43
Broothaerts W (2003) New findings in apple S-genotype analysis resolve previous confusion and request the re-numbering of some S-alleles. Theor Appl Genet106: 703–714
Broothaerts W, Janssens GA, Proost P, Broekaert WF (1995) cDNA cloning and molecular analysis of two self-incompatibility alleles from apple. Plant Mol Biol27: 499–511
Bus VG, Spiers AG, Brewster DT, Hofstee ME (1996) Preliminary screening of apple germplasm for resistance to silverleaf infection. J NZ Crop Hort Sci24: 1–6
Galli Z, Halasz G, Kiss E, Heszky L, Dobranszki J (2005) Molecular identification of commercial apple cultivars with microsatellite markers. HortScience40(7): 1974–1977
Janssens GA, Goderis IJ, Broekaert WF, Broothaerts W (1995) A molecular method for S-allele identification in apple based on allele-specific PCR. Theor Appl Genet91: 691–698
Janssens GA, van Haute AM, Keulemans J, Broothaerts W, Broekaert WF (1996) PCR analysis of self-incompatibility alleles in apple applied to leaves, seed embryos and in vitro shoots. Acta Hort484: 403–407
Kim HT, Hirata Y, Lee IH, Cho KS, Kim YK, Kang SS, Kim MS, Son DS, Koh GC, Nou IS (2004) PCR-RFLP screening of intergeneric hybrid between pear (Pyrus sp.) and apple (Malus sp.). Kor J Breed36(5): 330–337
Kim HT, Hattori G, Hirata Y, Kim DI, Hwang JH, Shin YU, Nou IS (2006) Determination of self-incompatibility genotypes of Korean apple cultivars based on S-RNase PCR. J Plant Biol49(6): 448–454
Kitahara K, Matsumoto S (2002a) Sequence of the S10 cDNA from Mclntosh apple and a PCR-digestion identification method. HortScience37: 187–190
Kitahara K, Matsumoto S (2002b) Cloning of the S25 cDNA from Mclntosh apple and an S25-allele identification method. J Hortic Sci Biotechnol77: 724–728
Kitahara K, Soejima J, Komatsu H, Fukui H, Matsumoto S (2000) Complete sequences of the S-genes ‘Sd-’ and ‘Sh-RNase’ cDNA in apple. HortScience35: 712–715
Kobel F, Steinegger P, Anliker J (1939) Weitere Untersuchungen uber die Befruchtungsverhaltnisse der Apfel-und Birnsorten. Landw Jb Schweiz53: 160–191
Komori S, Soejima J, Abe K, Kato H, Kotoda N, Kudo K (1999) Analyses of S-allele genotypes of ‘Mclntosh’, ‘Kitakami’, ‘Worcester Pearmain’, etc. J Jpn Soc Hort Sci68(2): 94
Komori S, Soejima J, Abe K, Kotoda N, Kato H (2000) Analysis of S-allele genotypes and genetic diversity in the apple. Acta Hort538: 83–86
Li T-Z, Katoh N, Kasai A, Okuno T (2004) S-RNase fromMalus domestica, cultivar Ontario. GenBank submission no. AY744080
Matityahu A, Stern RA, Schneider D, Goldway M (2005) Molecular identification of a new apple S-RNase-S29-doned from ‘Anna’, a low-chilling-requirement cultivar. HortScience40(3): 850–851
Matsumoto S, Furusawa Y (2005) Genomic DNA sequence of S16c(=16)-RNase in apple: Re-numbering of S16(=27a)- and S22(=27b)-allele to S16a and S16b. Sci Rep Rac Educ Gifu Univ (Nat. Sci.)29: 7–12
Matsumoto S, Kitahara K (2000) Discovery of a new self-incom patibility allele in apple. HortScience35: 1329–1332
Matsumoto S, Kitahara K, Komori S, Soejima J (1999) A new S-allele in apple, ‘Sg’, and its similarity to the ‘Sf’ allele from Fuji. HortScience34: 708–710
Matsumoto S, Suzuki M, Kitahara K, Soejima J (2000) Possible involvement of a new S-gene ‘St-RNase’ (Accession No. AB035928) in the wild apple possessing high similarity to the ‘S3-’ and ‘S5-RNase’ in the Japanese pear. Plant Physiol122: 620
Matsumoto S, Kitahara K, Komatsu H, Soejima J (2001a) A functional S-allele, ‘Sg’, in the wild apple possessing a single amino acid, S-RNase ‘Sg-RNase’, different from ‘Sg-RNase’ inMalus ×domestica cultivars. J Hortic Sci Biotechnol76: 163–166
Matsumoto S, Hayashi S, Kitahara K, Soejima J (2001b) Genomic DNA sequence encodingMalus × domestica Borkh. “Akane”, “Delicious” andMalus transitoria S-RNases. DNA Seq12: 381–383
Matsumoto S, Furusawa Y, Kitahara K, Komori S, Soejima J (2003) Partial genomic sequences of S6-, S12-, S13-, S14-, S17-, S19-, and S27-RNases of apple and their allele designations. Plant Biotechnol20(4): 323–329
de Nettancourt D (1977) Incompatibility in angiosperms,In R Frankel et al., eds, Monographs on Theoretical and Applied Genetics. Springer-Verlag, New York, pp 28–57
de Nettancourt D de (2001) Incompatibility and Incongruity in Wild and Cultivated Plants. Springer-Verlag
Okuno T (2000) S-RNase fromMalus domestica, cultivar Starking Delicious. GenBank submission no. AB017636
Sakurai K, Brown SK, Weeden NF (1997) Determining the self-incompatibility alleles of Japanese apple cultivars. Hort-Science32: 1258–1259
Sakurai K, Brown SK, Weeden NF (2000) Self-incompatibility alleles of apple cultivars and advanced selections. HortScience35: 116–119
Sassa H, Mase N, Hirano H, Ikehashi H (1994) Identification of self-incompatibility related glycoproteins in styles of apple(Malus ×domestica). Theor Appl Genet89: 201–205
Sassa H, Nishio T, Kowyama Y, Hirano T, Koba T, Ikehashi H (1996) Self-incompatibility (S) alleles of the Rosaceae encode members of a distinct class of the T2/S ribonuclease superfamily. Mol Gen Genet250: 547–557
Schneider D, Stern RA, Eisikowitch D, Goldway M (2001) Analysis of S-alleles by PCR for determination of compatibility in the Red Delicious apple orchard. J Hortic Sci Biotech76: 596–600
Steiner PW, van der Zwet T, Biggs AR (2006) Fire Blight,Erwinia amylovora. Available online at http://www.caf.wvu.edu/kear-neysville/disease_descriptions/omblight.html (verified 3 Aug 2006).
van Nerum I, Geerts M, van Haute A, Keulemans J, Broothaerts W (2001) Re-examination of the self-incompatibility genotype of apple cultivars containing putative ‘new’S alleles. Theor Appl Genet103: 584–591
Verdoodt L, van Haute A, Goderis IJ, de Witte K, Keulemans J, Broothaerts W (1998) Use of the multi-allelic self-incompatibility gene in apple to assess homozygosity in shoots obtained through haploid induction. Theor Appl Genet96: 294–300