Molecular and evolutionary analyses of formyl peptide receptors suggest the absence of VNO-specific FPRs in primates

Journal of Genetics and Genomics - Tập 37 - Trang 771-778 - 2010
Hui Yang1, Peng Shi1
1State Key Laboratory of Genetic Resources and Evolution, Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming 650223, China

Tài liệu tham khảo

Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389 Alvarez, 1996, Molecular evolution of the N-formyl peptide and C5a receptors in non-human primates, Immunogenetics, 44, 446, 10.1007/BF02602806 Bhatnagar, 1998, Vomeronasal organ in bats and primates: extremes of structural variability and its phylogenetic implications, Microsc. Res. Tech., 43, 465, 10.1002/(SICI)1097-0029(19981215)43:6<465::AID-JEMT1>3.0.CO;2-1 Boulay, 1990, The human N-formylpeptide receptor. Characterization of two cDNA isolates and evidence for a new subfamily of G-protein-coupled receptors, Biochemistry, 29, 11123, 10.1021/bi00502a016 Devosse, 2009, Formyl peptide receptor-like 2 is expressed and functional in plasmacytoid dendritic cells, tissue-specific macrophage subpopulations, and eosinophils, J. Immunol., 182, 4974, 10.4049/jimmunol.0803128 Dulac, 1995, A novel family of genes encoding putative pheromone receptors in mammals, Cell, 83, 195, 10.1016/0092-8674(95)90161-2 Durstin, 1994, Differential expression of members of the N-formylpeptide receptor gene cluster in human phagocytes, Biochem. Biophys. Res. Commun., 201, 174, 10.1006/bbrc.1994.1685 Felsenstein, 1985, Confidence limits on phylogenies: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678 Gao, 1998, Differential expansion of the N-formylpeptide receptor gene cluster in human and mouse, Genomics, 51, 270, 10.1006/geno.1998.5376 Grus, 2005, Dramatic variation of the vomeronasal pheromone receptor gene repertoire among five orders of placental and marsupial mammals, Proc. Natl. Acad. Sci. USA, 102, 5767, 10.1073/pnas.0501589102 Grus, 2007, Largest vertebrate vomero-nasal type 1 receptor gene repertoire in the semiaquatic platypus, Mol. Biol. Evol., 24, 2153, 10.1093/molbev/msm157 Gu, 1999, Statistical methods for testing functional divergence after gene duplication, Mol. Biol. Evol., 16, 1664, 10.1093/oxfordjournals.molbev.a026080 Herrada, 1997, A novel family of putative pheromone receptors in mammals with a topographically organized and sexually dimorphic distribution, Cell, 90, 763, 10.1016/S0092-8674(00)80536-X Le, 2002, Formyl-peptide receptors revisited, Trends Immunol., 23, 541, 10.1016/S1471-4906(02)02316-5 Liberles, 2009, Formyl peptide receptors are candidate chemosensory receptors in the vomeronasal organ, Proc. Natl. Acad. Sci. USA, 106, 9842, 10.1073/pnas.0904464106 Matsunami, 1997, A multigene family encoding a diverse array of putative pheromone receptors in mammals, Cell, 90, 775, 10.1016/S0092-8674(00)80537-1 Migeotte, 2006, Formyl peptide receptors: a promiscuous subfamily of G protein-coupled receptors controlling immune responses, Cytokine Growth Factor Rev., 17, 501, 10.1016/j.cytogfr.2006.09.009 Migeotte, 2005, Identification and characterization of an endogenous chemotactic ligand specific for FPRL2, J. Exp. Med., 201, 83, 10.1084/jem.20041277 Murphy, 1992, A structural homologue of the N-formyl peptide receptor. Characterization and chromosome mapping of a peptide chemoattractant receptor family, J. Biol. Chem., 267, 7637, 10.1016/S0021-9258(18)42563-X Riviere, 2009, Formyl peptide receptor-like proteins are a novel family of vomeronasal chemosensors, Nature, 459, 574, 10.1038/nature08029 Ryba, 1997, A new multigene family of putative pheromone receptors, Neuron, 19, 371, 10.1016/S0896-6273(00)80946-0 Saitou, 1987, The neighbor-joining method: a new method for reconstructing phylogenetic trees, Mol. Biol. Evol., 4, 406 Schilling, 1990, Vomeronasal activation by urine in the primate Microcebus murinus: a 2 DG study, Exp. Brain Res., 81, 609, 10.1007/BF02423511 Shi, 2005, Adaptive diversification of vomeronasal receptor 1 genes in rodents, J. Mol. Evol., 60, 566, 10.1007/s00239-004-0172-y Shi, 2007, Comparative genomic analysis identifies an evolutionary shift of vomeronasal receptor gene repertoires in the vertebrate transition from water to land, Genome Res., 17, 166, 10.1101/gr.6040007 Shi, 2009, Extraordinary Diversity of Chemosen-sory Receptor Gene Repertoires Among Vertebrates, Vol. 47, 1 Smith, 2005, The vomeronasal organ of greater bushbabies (Otolemur spp.): species, sex, and age differences, J. Neurocytol., 34, 135, 10.1007/s11068-005-5053-9 Takigami, 2004, Morphological evidence for two types of Mammalian vomeronasal system, Chem. Senses, 29, 301, 10.1093/chemse/bjh032 Tamura, 2007, MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0, Mol. Biol. Evol., 24, 1596, 10.1093/molbev/msm092 Thompson, J.D., Gibson, T.J., and Higgins, D.G. (2002). Multiple sequence alignment using ClustalW and ClustalX. Curr. Protoc. Bioinformatics Chapter 2: Unit 2.3. Wang, 2010, More functional V1R genes occur in nest-living and nocturnal terricolous mammals, Genome Biol. Evol., 2, 277, 10.1093/gbe/evq020 Yang, 2005, Composition an778 evolution of the V2r vomeronasal receptor gene repertoire in mice and rats, Genomics, 86, 306, 10.1016/j.ygeno.2005.05.012 Yang, 2007, PAML 4: phylogenetic analysis by maximum likelihood, Mol. Biol. Evol., 24, 1586, 10.1093/molbev/msm088 Ye, 2009, International union of basic and clinical pharmacology. LXXIII. Nomenclature for the formyl peptide receptor (FPR) family, Pharmacol. Rev., 61, 119, 10.1124/pr.109.001578 Young, 2010, Extreme variability among mammalian V1R gene families, Genome Res., 20, 10, 10.1101/gr.098913.109 Zhang, 2003, Evolutionary deterioration of the vomeronasal pheromone transduction pathway in catarrhine primates, Proc. Natl. Acad. Sci. USA, 100, 8337, 10.1073/pnas.1331721100