Molecular Phylogeny and Classification of the Mamiellophyceae class. nov. (Chlorophyta) based on Sequence Comparisons of the Nuclear- and Plastid-encoded rRNA Operons

Becker, 1994, Structure, composition and biogenesis of prasinophyte cell coverings, Protoplasma, 181, 233, 10.1007/BF01666398 Becker, 1991, 2-Keto-sugar acids in green flagellates: a chemical marker for prasinophycean scales, J Phycol, 27, 498, 10.1111/j.0022-3646.1991.00498.x Becker, 1990, Isolation, purification, and characterization of flagellar scales from the green flagellate Tetraselmis striata (Prasinophyceae), Protoplasma, 156, 103, 10.1007/BF01666511 Beech, 1991, Development of the flagellar apparatus during the cell cycle in unicellular algae, Protoplasma, 164, 23, 10.1007/BF01320812 Bhattacharya, 1998, Actin phylogeny identifies Mesostigma viride as a flagellate ancestor of the land plants, J Mol Evol, 47, 544, 10.1007/PL00006410 Bremer, 1985, Summary of green plant phylogeny and classification, Cladistics, 1, 369, 10.1111/j.1096-0031.1985.tb00434.x Cardol, 2008, An original adaptation of photosynthesis in the marine green alga Ostreococcus, Proc Natl Acad Sci USA, 105, 7881, 10.1073/pnas.0802762105 Cavalier-Smith, 1993, The Origin, Losses and Gains of Chloroplasts, 291 Chrétiennot-Dinet, 1995, A new marine picoeukaryote – Ostreococcus tauri gen. et sp. nov. (Chlorophyta, Prasinophyceae), Phycologia, 34, 285, 10.2216/i0031-8884-34-4-285.1 Christensen, 1962, Alger Coleman, 2009, Is there a molecular key to the level of “biological species” in eukaryotes? A DNA guide, Mol Phylogenet Evol, 50, 197, 10.1016/j.ympev.2008.10.008 Courties, 1998, Phylogenetic analysis and genome size of Ostreococcus tauri (Chlorophyta, Prasinophyceae), J Phycol, 34, 844, 10.1046/j.1529-8817.1998.340844.x Courties, 1994, Smallest eukaryotic organism, Nature, 370, 255, 10.1038/370255a0 Derelle, 2006, Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features, Proc Natl Acad Sci USA, 103, 11647, 10.1073/pnas.0604795103 Fawley, 1999, The relationship between Pseudoscourfieldia marina and Pycnococcus provasolii (Prasinophyceae, Chlorophyta): evidence from 18S rDNA sequence data, J Phycol, 35, 838, 10.1046/j.1529-8817.1999.3540838.x Fawley, 2000, Phylogenetic analyses of 18S rDNA sequences reveal a new coccoid lineage of the Prasinophyceae (Chlorophyta), J Phycol, 36, 387, 10.1046/j.1529-8817.2000.99105.x Fuller, 2006, Analysis of photosynthetic picoeukaryote diversity at open ocean sites in the Arabian Sea using a PCR biased towards marine algal plastids, Aquat Microb Ecol, 43, 79, 10.3354/ame043079 Galtier, 1996, SeaView and Phylowin, two graphic tools for sequence alignment and molecular phylogeny, Comput Appl Biosci, 12, 543 Gillespie, 2006, Characteristics of the nuclear (18S, 5.8S, 28S and 5S) and mitochondrial (12S and 16S) rRNA genes of Apis mellifera (Insecta: Hymenoptera): structure, organization, and retrotransposable elements, Insect Mol Biol, 15, 657, 10.1111/j.1365-2583.2006.00689.x Guillou, 2004, Diversity of picoplanktonic prasinophytes assessed by direct nuclear SSU rDNA sequencing of environmental samples and novel isolates retrieved from oceanic and coastal marine ecosystems, Protist, 155, 193, 10.1078/143446104774199592 Hasegawa, 1996, Prasinoderma coloniale gen. et sp. nov., a new pelagic coccoid prasinophyte from the Western Pacific Ocean, Phycologia, 35, 170, 10.2216/i0031-8884-35-2-170.1 Heimann, 1989, The flagellar developmental cycle in algae: two types of flagellar development in uniflagellated algae, Protoplasma, 153, 14, 10.1007/BF01322460 Jackson, 2002, Distribution of rRNA introns in the three-dimensional structure of the ribosome, J Mol Biol, 323, 35, 10.1016/S0022-2836(02)00895-1 Jancek, 2008, Clues about the genetic basis of adaptation that emerge from comparing the proteomes of two Ostreococcus ecotypes (Chlorophyta, Prasinophyceae), Mol Biol Evol, 25, 2293, 10.1093/molbev/msn168 Karol, 2001, The closest living relatives of land plants, Science, 294, 2351, 10.1126/science.1065156 Latasa, 2004, Pigment suites and taxonomic groups in Prasinophyceae, J Phycol, 40, 1149, 10.1111/j.1529-8817.2004.03136.x Le Gall, 2008, Picopklankton diversity on the South-East Pacific Ocean from cultures, Biogeosciences, 5, 203, 10.5194/bg-5-203-2008 Lemieux, 2007, A clade uniting the green algae Mesostigma viride and Chlorokybus atmophyticus represents the deepest branch of the Streptophyta in chloroplast genome-based phylogenies, BMC Biol, 5, 2, 10.1186/1741-7007-5-2 Lepère, 2008, Unexpected importance of potential parasites in the composition of the freshwater small-eukaryote community, Appl Environ Microbiol, 74, 2940, 10.1128/AEM.01156-07 Lewin, 2000, Picocystis salinarum gen. et sp. nov. (Chlorophyta) – new picoplanktonic green alga, Phycologia, 39, 560, 10.2216/i0031-8884-39-6-560.1 Lewis, 2004, Green algae and the origin of land plants, Am J Bot, 91, 1535, 10.3732/ajb.91.10.1535 Mai, 1997, The internal transcribed spacer 2 exhibits a common secondary structure in green algae and flowering plants, J Mol Biol, 44, 258 Manton, 1965, Some Phyletic Implications of Flagellar Structure in Plants, Vol II, 1 Manton, 1967, Electron microscopical observations on a clone of Monomastix Scherffel in culture, Nova Hedwigia, 14, 1 Manton, 1960, Further observations on small green flagellates with special reference to possible relatives of Chromulina pusilla Butcher, J Mar Biol Assoc UK, 39, 275, 10.1017/S0025315400013321 Marin, 1994, Flagellar hairs in prasinophytes (Chlorophyta) – ultrastructure and distribution on the flagellar surface, J Phycol, 30, 659, 10.1111/j.0022-3646.1994.00659.x Marin, 1999, Mesostigmatophyceae, a new class of streptophyte green algae revealed by SSU rRNA sequence comparisons, Protist, 150, 399, 10.1016/S1434-4610(99)70041-6 Marin, 2005, A plastid in the making: evidence for a second primary endosymbiosis, Protist, 156, 425, 10.1016/j.protis.2005.09.001 Marin, 2003, Phylogeny and taxonomic revision of plastid-containing euglenophytes based on SSU rDNA sequence comparisons and synapomorphic signatures in the SSU rRNA secondary structure, Protist, 154, 99, 10.1078/143446103764928521 Massjuk, 2006, Chlorodendrophyceae class nov. (Chlorophyta, Viridiplantae) in the Ukrainian flora: I. The volume, phylogenetic relations and taxonomical status, Ukr Bot J, 63, 601 Mattox, 1973, Observations on the zoospores of Pseuendoclonium basiliense and Trichosarcina polymorpha (Chlorophyceae), Can J Bot, 51, 1425, 10.1139/b73-178 Mattox, 1984, Classification of the Green Algae: a Concept Based on Comparative Cytology, 29 McCourt, 2004, Charophyte algae and land plant origins, Trends Ecol Evol, 19, 661, 10.1016/j.tree.2004.09.013 Melkonian, 1982, Structural and evolutionary aspects of the flagellar apparatus in green algae and land plants, Taxon, 31, 255, 10.2307/1219989 Melkonian, 1983, Mesostigma, a key organism in the evolution of two major classes of green algae and related to the ancestry of land plants, Br Phycol J, 18, 206 Melkonian, 1984, Flagellar Apparatus Ultrastructure in Relation to Green Algal Classification, 73 Melkonian, 1990, Phylum Chlorophyta: Class Prasinophyceae, 600 Melkonian, 1981, Comparative ultrastructure of underlayer scales in four species of the green flagellate Pyramimonas: a freeze-fracture and thin section study, Phycologia, 20, 365, 10.2216/i0031-8884-20-4-365.1 Melkonian, 1995, Phylogeny of the Chlorophyta: congruence between ultrastructural and molecular evidence, Bull Soc Zool Fr, 120, 191 Melkonian, 1995, Phylogeny and Evolution of the Algae, 153 Miyashita, 1993, Prasinococcus capsulatus. gen. et sp. nov., a new marine coccoid prasinophyte, J Gen Appl Microbiol, 39, 571, 10.2323/jgam.39.571 Moestrup, 1982, Flagellar structure in algae: a review, with new observations particularly on the Chrysophyceae, Phaeophyceae (Fucophyceae), Euglenophyceae, and Reckertia, Phycologia, 21, 427, 10.2216/i0031-8884-21-4-427.1 Moestrup, 1984, Further studies on Nephroselmis and its allies (Prasinophyceae); II. Mamiella gen. nov., Mamiellaceae fam. nov., Mamiellales ord. nov, Nord J Bot, 4, 109, 10.1111/j.1756-1051.1984.tb01980.x Moestrup, 1991, Further studies of presumedly primitive green algae, including the description of Pedinophyceae class.nov. and Resultor gen. nov, J Phycol, 27, 119, 10.1111/j.0022-3646.1991.00119.x Moestrup, 1988, Light and electron microscopical studies on Pseudoscourfieldia marina, a primitive scaly green flagellate (Prasinophyceae) with posterior flagella, Can J Bot, 66, 1415, 10.1139/b88-197 Müller, 2007, Distinguishing species, RNA, 13, 1469, 10.1261/rna.617107 Nakada, 2008, Molecular systematics of Volvocales (Chlorophyceae, Chlorophyta) based on exhaustive 18S rRNA phylogenetic analyses, Mol Phylogen Evol, 48, 281, 10.1016/j.ympev.2008.03.016 Nakayama, 2000, Taxonomy and the phylogenetic position of a new prasinophycean alga, Crustomastix didyma gen. & sp. nov. (Chlorophyta), Phycologia, 39, 337, 10.2216/i0031-8884-39-4-337.1 Nakayama, 2007, Phylogeny and ultrastructure of Nephroselmis and Pseudoscourfieldia (Chlorophyta), including the description of Nephroselmis anterostigmatica sp. nov. and a proposal for the Nephroselmidales ord. nov, Phycologia, 46, 680, 10.2216/04-25.1 Nakayama, 1998, The basal position of scaly green flagellates among the green algae (Chlorophyta) is revealed by analyses of nuclear-encoded SSU rRNA sequences, Protist, 149, 367, 10.1016/S1434-4610(98)70043-4 Not, 2004, A single species, Micromonas pusilla (Prasinophyceae), dominates the eukaryotic picoplankton in the western English channel, Appl Environ Microbiol, 70, 4064, 10.1128/AEM.70.7.4064-4072.2004 Not, 2008, Protistan assemblages across the Indian Ocean, with a specific emphasis on the picoeukaryotes, Deep Sea Res, 55, 1456, 10.1016/j.dsr.2008.06.007 Palenik, 2007, The tiny eukaryote Ostreococcus provides genomic insights into the paradox of plankton speciation, Proc Natl Acad Sci USA, 104, 7705, 10.1073/pnas.0611046104 Pickett-Heaps, 1968, Ultrastructure and differentiation in Chara (fibrosa). IV. Spermatogenesis, Aust J Biol Sci, 21, 655, 10.1071/BI9680655 Posada, 2008, jModel test: phylogenetic model averaging, Mol Biol Evol, 25, 1253, 10.1093/molbev/msn083 Potter, 1997, Convegrent evolution masks extensive biodiversity among marine coccoid picoplankton, Biodivers Conserv, 6, 99, 10.1023/A:1018379716868 Rodriguez, 2005, Ecotype diversity in the marine picoeukaryote Ostreococcus (Chlorophyta, Prasinophyceae), Environ Microbiol, 7, 853, 10.1111/j.1462-2920.2005.00758.x Rodríguez-Ezpeleta, 2007, Phylogenetic analyses of nuclear, mitochondrial, and plastid multigene data sets support the placement of Mesostigma in the Streptophyta, Mol Biol Evol, 24, 723, 10.1093/molbev/msl200 Rogers, 1981, The flagellar apparatus of Mesostigma viride (Prasinophyceae): multilayered structures in a scaly green flagellate, Pl Syst Evol, 138, 247, 10.1007/BF00985188 Ronquist, 2003, MrBayes 3: Bayesian phylogenetic inference under mixed models, Bioinformatics, 19, 1572, 10.1093/bioinformatics/btg180 Scherffel, 1912, Zwei neue, trichocystenartige Bildungen führende Flagellaten, Arch Protistenkd, 27, 94 Schulze, 1987, Immunolocalization of a Ca2+-modulated contractile protein in the flagellar apparatus of green algae: the nucleus-basal body connector, Eur J Cell Biol, 45, 51 Six, 2008, Contrasting photoacclimation costs in ecotypes of the marine eukaryotic picoplankter Ostreococcus, Limnol Oceanogr, 53, 255, 10.4319/lo.2008.53.1.0255 Slapeta, 2006, Global dispersal and ancient cryptic species in the smallest marine eukaryotes, Mol Biol Evol, 23, 23, 10.1093/molbev/msj001 Steinkötter, 1994, Prasinophytes form independent lineages within the Chlorophyta: evidence from ribosomal RNA sequence comparisons, J Phycol, 30, 340, 10.1111/j.0022-3646.1994.00340.x Stoeck, 2006, A multiple PCR-primer approach to access microeukaryotic diversity in environmental samples, Protist, 157, 31, 10.1016/j.protis.2005.10.004 Surek, 2004, CCAC – Culture collection of algae at the University of Cologne: a new collection of axenic algae with emphasis on flagellates, Nova Hedwigia, 79, 77, 10.1127/0029-5035/2004/0079-0077 Sym, 1993, The Class Prasinophyceae, Vol. 9, 281 Throndsen, 1997, Dolichomastix tenuilepis sp. nov., a first insight into the microanatomy of the genus Dolichomastix (Mamiellales, Prasinophyceae, Chlorophyta), Phycologia, 36, 244, 10.2216/i0031-8884-36-3-244.1 Turmel, 2009, The chloroplast genomes of the green algae Pedinomonas minor, Parachlorella kessleri and Oocystis solitaria reveal a shared ancestry between the Pedinomonadales and Chlorellales, Mol Biol Evol, 26, 2317, 10.1093/molbev/msp138 Turmel, 2009, The chloroplast genomes of the green algae Pyramimonas, Monomastix and Pycnococcus shed new light on the evolutionary history of prasinophytes and the origin of the secondary chloroplasts of euglenids, Mol Biol Evol, 26, 631, 10.1093/molbev/msn285 Turner, 1968, An ultrastructural study of plant spermatogenesis. Spermatogenesis in Nitella, J Cell Biol, 37, 370, 10.1083/jcb.37.2.370 Urbach, 2001, Unusual bacterioplankton community structure in ultra-oligotrophic Crater Lake, Limnol Oceanogr, 46, 557, 10.4319/lo.2001.46.3.0557 Vaulot, 2008, The diversity of small eukaryotic phytoplankton (≤3μm) in marine ecosystems, FEMS Microbiol Rev, 32, 795, 10.1111/j.1574-6976.2008.00121.x Viprey, 2008, Wide genetic diversity of picoplanktonic green algae (Chloroplastida) in the Mediterranean Sea uncovered by a phylum-biased PCR approach, Environ Microbiol, 10, 1804, 10.1111/j.1462-2920.2008.01602.x Worden, 2006, Picoeukaryote diversity in coastal waters of the Pacific Ocean, Aquat Microb Ecol, 43, 165, 10.3354/ame043165 Worden, 2004, Assessing the dynamics and ecology of marine picophytoplankton: the importance of the eukaryotic component, Limnol Oceanogr, 49, 168, 10.4319/lo.2004.49.1.0168 Worden, 2009, Green evolution and dynamic adaptations revealed by genomes of the marine picoeukaryote Micromonas, Science, 324, 268, 10.1126/science.1167222 Wustman, 2004, A study of cell wall and flagella formation during cell division in the scaly green alga, Scherffelia dubia, J Phycol, 40, 895, 10.1111/j.1529-8817.2004.04056.x Wuyts, 2001, Distribution of substitution rates and location of insertion sites in the tertiary structure of ribosomal RNA, Nucleic Acids Res, 29, 5017, 10.1093/nar/29.24.5017 Zingone, 2002, Phylogenetic position of Crustomastix stigmatica sp. nov. and Dolichomastix tenuilepis in relation to the Mamiellales (Prasinophyceae, Chlorophyta), J Phycol, 38, 1024, 10.1046/j.1529-8817.2002.t01-1-02035.x