Modulation of Gut Microbiota in Pathological States
Tài liệu tham khảo
Xu, 2003, Honor thy symbionts, Proc Natl Acad Sci USA, 100, 10.1073/pnas.1734063100
Sender, 2016, Revised estimates for the number of human and bacteria cells in the body, PLoS Biol, 14, 10.1371/journal.pbio.1002533
Qin, 2012, A metagenome-wide association study of gut microbiota in type 2 diabetes, Nature, 490, 55, 10.1038/nature11450
Aagaard, 2014, The placenta harbors a unique microbiome, Sci Transl Med, 6, 10.1126/scitranslmed.3008599
Ardissone, 2014, Meconium microbiome analysis identifies bacteria correlated with premature birth, PLoS One, 9, 10.1371/journal.pone.0090784
Bobitt, 1977, Unrecognized amnionitis and prematurity: a preliminary report, J Reprod Med, 19, 8
Moles, 2013, Bacterial diversity in meconium of preterm neonates and evolution of their fecal microbiota during the first month of life, PLoS One, 8, 10.1371/journal.pone.0066986
Martiny, 2015, Microbiomes in light of traits: a phylogenetic perspective, Science, 350, 10.1126/science.aac9323
Lozupone, 2012, Diversity, stability and resilience of the human gut microbiota, Nature, 489, 220, 10.1038/nature11550
Maslowski, 2011, Diet, gut microbiota and immune responses, Nat Immunol, 12, 5, 10.1038/ni0111-5
Rodríguez, 2015, The composition of the gut microbiota throughout life, with an emphasis on early life, Microb Ecol Health Dis, 26
Lynch, 2016, The human intestinal microbiome in health and disease, N Engl J Med, 375, 2369, 10.1056/NEJMra1600266
Kelly, 2004, Commensal anaerobic gut bacteria attenuate inflammation by regulating nuclear-cytoplasmic shuttling of PPAR-γ and RelA, Nat Immunol, 5, 104, 10.1038/ni1018
Boulangé, 2016, Impact of the gut microbiota on inflammation, obesity, and metabolic disease, Genome Med, 8, 42, 10.1186/s13073-016-0303-2
Engels, 2016, The common gut microbe Eubacterium hallii also contributes to intestinal propionate formation, Front Microbiol, 7, 713, 10.3389/fmicb.2016.00713
Yano, 2015, Indigenous bacteria from the gut microbiota regulate host serotonin biosynthesis, Cell, 161, 264, 10.1016/j.cell.2015.02.047
Wikoff, 2009, Metabolomics analysis reveals large effects of gut microflora on mammalian blood metabolites, Proc Natl Acad Sci USA, 106, 3698, 10.1073/pnas.0812874106
Li, 2008, Symbiotic gut microbes modulate human metabolic phenotypes, Proc Natl Acad Sci USA, 105, 2117, 10.1073/pnas.0712038105
Antharam, 2016, An integrated metabolomic and microbiome analysis identified specific gut microbiota associated with fecal cholesterol and coprostanol in Clostridium difficile infection, PLoS One, 11, 10.1371/journal.pone.0148824
O’Connor A, O’Morain CA, Ford AC. Population screening and treatment of Helicobacter pylori infection. Nat Rev Gastroenterol Hepatol. Epub 2017 Jan 5.
Konishi, 2016, Probiotic-derived ferrichrome inhibits colon cancer progression via JNK-mediated apoptosis, Nat Commun, 7, 10.1038/ncomms12365
Klein, 1977, Association of Streptococcus bovis with carcinoma of the colon, N Engl J Med, 297, 800, 10.1056/NEJM197710132971503
Ruoff, 1989, Bacteremia with Streptococcus bovis and Streptococcus salivarius: clinical correlates of more accurate identification of isolates, J Clin Microbiol, 27, 305, 10.1128/JCM.27.2.305-308.1989
Huang, 2003, Meta-analysis of the relationship between cagA seropositivity and gastric cancer, Gastroenterology, 125, 1636, 10.1053/j.gastro.2003.08.033
Martin, 2004, Enhanced Escherichia coli adherence and invasion in Crohn’s disease and colon cancer, Gastroenterology, 127, 80, 10.1053/j.gastro.2004.03.054
Arthur, 2011, The struggle within: microbial influences on colorectal cancer, Inflamm Bowel Dis, 17, 396, 10.1002/ibd.21354
Bellentani, 2017, The epidemiology of non-alcoholic fatty liver disease, Liver Int, 37, 81, 10.1111/liv.13299
Seto, 2017, Nonalcoholic fatty liver disease in Asia: emerging perspectives, J Gastroenterol, 52, 164, 10.1007/s00535-016-1264-3
Henao-Mejia, 2012, Inflammasome-mediated dysbiosis regulates progression of NAFLD and obesity, Nature, 482, 179, 10.1038/nature10809
Wang, 2016, Altered fecal microbiota correlates with liver biochemistry in nonobese patients with non-alcoholic fatty liver disease, Sci Rep, 6
Le Roy, 2013, Intestinal microbiota determines development of non-alcoholic fatty liver disease in mice, Gut, 62, 1787, 10.1136/gutjnl-2012-303816
Mouzaki, 2013, Intestinal microbiota in patients with nonalcoholic fatty liver disease, Hepatology, 58, 120, 10.1002/hep.26319
Raman, 2013, Fecal microbiome and volatile organic compound metabolome in obese humans with nonalcoholic fatty liver disease, Clin. Gastroenterol Hepatol, 11, 868, 10.1016/j.cgh.2013.02.015
Zhu, 2013, Characterization of gut microbiomes in nonalcoholic steatohepatitis (NASH) patients: a connection between endogenous alcohol and NASH, Hepatology, 57, 601, 10.1002/hep.26093
Boursier, 2016, The severity of nonalcoholic fatty liver disease is associated with gut dysbiosis and shift in the metabolic function of the gut microbiota, Hepatology, 63, 764, 10.1002/hep.28356
Turnbaugh, 2006, An obesity-associated gut microbiome with increased capacity for energy harvest, Nature, 444, 1027, 10.1038/nature05414
Perry, 2016, Acetate mediates a microbiome–brain–β-cell axis to promote metabolic syndrome, Nature, 534, 213, 10.1038/nature18309
Cani, 2004, Inulin-type fructans modulate gastrointestinal peptides involved in appetite regulation (glucagon-like peptide-1 and ghrelin) in rats, Br J Nutr, 92, 521, 10.1079/BJN20041225
Cani, 2007, Metabolic endotoxemia initiates obesity and insulin resistance, Diabetes, 56, 1761, 10.2337/db06-1491
Maslowski, 2009, Regulation of inflammatory responses by gut microbiota and chemoattractant receptor GPR43, Nature, 461, 1282, 10.1038/nature08530
Ruiz, 2007, Lipopolysaccharide-binding protein plasma levels and liver TNF-α gene expression in obese patients: evidence for the potential role of endotoxin in the pathogenesis of non-alcoholic steatohepatitis, Obes Surg, 17, 1374, 10.1007/s11695-007-9243-7
Rivera, 2007, Toll-like receptor-4 signaling and Kupffer cells play pivotal roles in the pathogenesis of non-alcoholic steatohepatitis, J Hepatol, 47, 571, 10.1016/j.jhep.2007.04.019
Sabaté, 2008, High prevalence of small intestinal bacterial overgrowth in patients with morbid obesity: a contributor to severe hepatic steatosis, Obes Surg, 18, 371, 10.1007/s11695-007-9398-2
Miele, 2009, Increased intestinal permeability and tight junction alterations in nonalcoholic fatty liver disease, Hepatology, 49, 1877, 10.1002/hep.22848
Harte, 2010, Elevated endotoxin levels in non-alcoholic fatty liver disease, J Inflamm (Lond), 7, 15, 10.1186/1476-9255-7-15
Kapil, 2016, Small intestinal bacterial overgrowth and toll like receptor signaling in patients with nonalcoholic fatty liver disease, J Gastroenterol Hepatol, 31, 213, 10.1111/jgh.13058
Imajo, 2012, Hyperresponsivity to low-dose endotoxin during progression to nonalcoholic steatohepatitis is regulated by leptin-mediated signaling, Cell Metab, 16, 44, 10.1016/j.cmet.2012.05.012
Bäckhed, 2004, The gut microbiota as an environmental factor that regulates fat storage, Proc Natl Acad Sci USA, 101, 15718, 10.1073/pnas.0407076101
Ley, 2005, Obesity alters gut microbial ecology, Proc Natl Acad Sci USA, 102, 11070, 10.1073/pnas.0504978102
Turnbaugh, 2008, Diet-induced obesity is linked to marked but reversible alterations in the mouse distal gut microbiome, Cell Host Microbe, 3, 213, 10.1016/j.chom.2008.02.015
Ridaura, 2013, Gut microbiota from twins discordant for obesity modulate metabolism in mice, Science, 341, 10.1126/science.1241214
Zhang, 2015, Dietary modulation of gut microbiota contributes to alleviation of both genetic and simple obesity in children, EBioMedicine, 2, 968, 10.1016/j.ebiom.2015.07.007
Khan MJ, Gerasimidis K, Edwards CA, Shaikh MG. Mechanisms of obesity in Prader-Willi syndrome. Pediatr Obes. Epub 2016 Nov 10.
Tilg, 2014, Microbiota and diabetes: an evolving relationship, Gut, 63, 1513, 10.1136/gutjnl-2014-306928
Larsen, 2010, Gut microbiota in human adults with type 2 diabetes differs from non-diabetic adults, PLoS One, 5, 10.1371/journal.pone.0009085
Karlsson, 2013, Gut metagenome in European women with normal, impaired and diabetic glucose control, Nature, 498, 99, 10.1038/nature12198
Joyce, 2014, Regulation of host weight gain and lipid metabolism by bacterial bile acid modification in the gut, Proc Natl Acad Sci USA, 111, 7421, 10.1073/pnas.1323599111
Ghazalpour, 2016, Expanding role of gut microbiota in lipid metabolism, Curr Opin Lipidol, 27, 141, 10.1097/MOL.0000000000000278
Kishino, 2013, Polyunsaturated fatty acid saturation by gut lactic acid bacteria affecting host lipid composition, Proc Natl Acad Sci USA, 110, 17808, 10.1073/pnas.1312937110
Koren, 2011, Human oral, gut, and plaque microbiota in patients with atherosclerosis, Proc Natl Acad Sci USA, 108, 4592, 10.1073/pnas.1011383107
Fu, 2015, The gut microbiome contributes to a substantial proportion of the variation in blood lipids, Circ Res, 117, 817, 10.1161/CIRCRESAHA.115.306807
Wang, 2011, Gut flora metabolism of phosphatidylcholine promotes cardiovascular disease, Nature, 472, 57, 10.1038/nature09922
Koeth, 2014, γ-Butyrobetaine is a pro-atherogenic intermediate in gut microbial metabolism of L-carnitine to TMAO, Cell Metab, 20, 799, 10.1016/j.cmet.2014.10.006
Bennett, 2013, Trimethylamine-N-oxide, a metabolite associated with atherosclerosis, exhibits complex genetic and dietary regulation, Cell Metab, 17, 49, 10.1016/j.cmet.2012.12.011
Shih, 2015, Flavin containing monooxygenase 3 exerts broad effects on glucose and lipid metabolism and atherosclerosis, J Lipid Res, 56, 22, 10.1194/jlr.M051680
Warrier, 2015, The TMAO-generating enzyme flavin monooxygenase 3 is a central regulator of cholesterol balance. Cell Rep, 10, 326
Wang, 2015, Non-lethal inhibition of gut microbial trimethylamine production for the treatment of atherosclerosis, Cell, 163, 1585, 10.1016/j.cell.2015.11.055
Sarkar, 2016, Psychobiotics and the manipulation of bacteria-gut-brain signals, Trends Neurosci, 39, 763, 10.1016/j.tins.2016.09.002
Heijtz, 2011, Normal gut microbiota modulates brain development and behavior, Proc Natl Acad Sci USA, 108, 3047, 10.1073/pnas.1010529108
Neufeld, 2011, Reduced anxiety-like behavior and central neurochemical change in germ-free mice, Neurogastroenterol Motil, 23, 255, 10.1111/j.1365-2982.2010.01620.x
Liu, 2015, Neuroprotective effects of Clostridium butyricum against vascular dementia in mice via metabolic butyrate, Biomed Res Int, 2015, 10.1155/2015/412946
Ait-Belgnaoui, 2014, Probiotic gut effect prevents the chronic psychological stress-induced brain activity abnormality in mice, Neurogastroenterol Motil, 26, 510, 10.1111/nmo.12295
Buffington, 2016, Microbial reconstitution reverses maternal diet-induced social and synaptic deficits in offspring, Cell, 165, 1762, 10.1016/j.cell.2016.06.001
Hsiao, 2013, Microbiota modulate behavioral and physiological abnormalities associated with neurodevelopmental disorders, Cell, 155, 1451, 10.1016/j.cell.2013.11.024
Borrelli, 2016, Probiotic modulation of the microbiota-gut-brain axis and behaviour in zebrafish, Sci Rep, 6, 10.1038/srep30046
Bravo, 2011, Ingestion of Lactobacillus strain regulates emotional behavior and central GABA receptor expression in a mouse via the vagus nerve, Proc Natl Acad Sci USA, 108, 16050, 10.1073/pnas.1102999108
Möhle, 2016, Ly6Chi monocytes provide a link between antibiotic-induced changes in gut microbiota and adult hippocampal neurogenesis, Cell Rep, 15, 1945, 10.1016/j.celrep.2016.04.074
Chen, 2016, Role of neuroinflammation in neurodegenerative diseases (Review), Mol Med Rep, 13, 3391, 10.3892/mmr.2016.4948
Keshavarzian, 2015, Colonic bacterial composition in Parkinson’s disease, Movement Disord, 30, 1351, 10.1002/mds.26307
Wu, 2015, Leaky intestine and impaired microbiome in an amyotrophic lateral sclerosis mouse model, Physiol Rep, 3, 10.14814/phy2.12356
Barrett, 2012, γ-Aminobutyric acid production by culturable bacteria from the human intestine, J Appl Microbiol, 113, 411, 10.1111/j.1365-2672.2012.05344.x
Brenner, 2013, Med Hypotheses, 80, 103, 10.1016/j.mehy.2012.10.010
Amato, 2015, Variable responses of human and non-human primate gut microbiomes to a Western diet, Microbiome, 3, 53, 10.1186/s40168-015-0120-7
Lin, 2016, Correlations of fecal metabonomic and microbiomic changes induced by high-fat diet in the pre-obesity state, Sci Rep, 6
David, 2014, Diet rapidly and reproducibly alters the human gut microbiome, Nature, 505, 559, 10.1038/nature12820
Zhernakova, 2016, Population-based metagenomics analysis reveals markers for gut microbiome composition and diversity, Science, 352, 565, 10.1126/science.aad3369
Sokol, 2008, Faecalibacterium prausnitzii is an anti-inflammatory commensal bacterium identified by gut microbiota analysis of Crohn disease patients, Proc Natl Acad Sci USA, 105, 16731, 10.1073/pnas.0804812105
Osborn, 2007, Prebiotics in infants for prevention of allergic disease and food hypersensitivity, Cochrane Database Syst Rev, 10.1002/14651858.CD006474.pub2
Walker, 2011, Dominant and diet-responsive groups of bacteria within the human colonic microbiota, ISME J, 5, 220, 10.1038/ismej.2010.118
Kleessen, 1997, Effects of inulin and lactose on fecal microflora, microbial activity, and bowel habit in elderly constipated persons, Am J Clin Nutr, 65, 1397, 10.1093/ajcn/65.5.1397
Brüssow, 2016, Biome engineering-2020, Microb Biotechnol, 9, 553, 10.1111/1751-7915.12391
Cox, 2010, Lactobacillus casei abundance is associated with profound shifts in the infant gut microbiome, PLoS One, 5, 10.1371/journal.pone.0008745
Korpela, 2016, Lactobacillus rhamnosus GG intake modifies preschool children’s intestinal microbiota, alleviates penicillin-associated changes, and reduces antibiotic use, PLoS One, 11, 10.1371/journal.pone.0154012
Zhao, 2013, Gut microbiota composition modifies fecal metabolic profiles in mice, J Proteome Res, 12, 2987, 10.1021/pr400263n
Dethlefsen, 2011, Incomplete recovery and individualized responses of the human distal gut microbiota to repeated antibiotic perturbation, Proc Natl Acad Sci USA, 108, 4554, 10.1073/pnas.1000087107
Karlsson, 2011, A closer look at Bacteroides: phylogenetic relationship and genomic implications of a life in the human gut, Microb Ecol, 61, 473, 10.1007/s00248-010-9796-1
Jyothi, 2007, Anti-bacterial response of twelve plants of folk-lore medicine used against diabetis mellitus, J Phytol Res, 20, 161
Eiseman, 1958, Fecal enema as an adjunct in the treatment of pseudomembranous enterocolitis, Surgery, 44, 854
van Nood, 2013, Duodenal infusion of donor feces for recurrent Clostridium difficile, N Engl J Med, 368, 407, 10.1056/NEJMoa1205037
Lee, 2016, Frozen vs fresh fecal microbiota transplantation and clinical resolution of diarrhea in patients with recurrent Clostridium difficile infection: a randomized clinical trial, JAMA, 315, 142, 10.1001/jama.2015.18098
Hamilton, 2013, High-throughput DNA sequence analysis reveals stable engraftment of gut microbiota following transplantation of previously frozen fecal bacteria, Gut Microbes, 4, 125, 10.4161/gmic.23571
Weingarden, 2015, Dynamic changes in short-and long-term bacterial composition following fecal microbiota transplantation for recurrent Clostridium difficile infection, Microbiome, 3, 10, 10.1186/s40168-015-0070-0
Millan, 2016, Fecal microbial transplants reduce antibiotic-resistant genes in patients with recurrent Clostridium difficile infection, Clin Infect Dis, 62, 1479, 10.1093/cid/ciw185