Modification of the composition of dissolved nitrogen forms, nitrogen transformation processes, and diversity of bacterial communities by freeze–thaw events in temperate soils
Tài liệu tham khảo
Albuquerque, 2014
Alfreider, 2002, Microbial community dynamics during composting of organic matter as determined by 16S ribosomal DNA analysis, Compost Sci. Util., 10, 303, 10.1080/1065657X.2002.10702094
Alley, 2007
Brookes, 1985, Chloroform fumigation and the release of soil nitrogen: a rapid direct extraction method to measure microbial biomass nitrogen in soil, Soil Biol. Biochem., 17, 837, 10.1016/0038-0717(85)90144-0
Caporaso, 2010, QIIME allows analysis of high-throughput community sequencing data, Nat. Methods, 7, 335, 10.1038/nmeth.f.303
Carini, 2017, Relic DNA is abundant in soil and obscures estimates of soil microbial diversity, Nat. Microbiol., 2
Chao, 1992, Estimating population size for capture-recapture data when capture probabilities vary by time and individual animal, Biometrics, 48, 201, 10.2307/2532750
Chen, 2015, Isolation and characterization of Achromobacter sp CX2 from symbiotic Cytophagales, a non-cellulolytic bacterium showing synergism with cellulolytic microbes by producing beta-glucosidase, Ann. Microbiol., 65, 1699, 10.1007/s13213-014-1009-6
Dalsgaard, 1993, Virulence mechanisms in Cytophaga psychrophila and other Cytophaga -like bacteria pathogenic for fish, Annu. Rev. Fish Dis., 3, 127, 10.1016/0959-8030(93)90032-7
DeBruyn, 2013, Gemmatirosa kalamazoonesis gen. nov., sp nov., a member of the rarely-cultivated bacterial phylum Gemmatimonadetes, J. Gen. Appl. Microbiol., 59, 305, 10.2323/jgam.59.305
Deluca, 1992, Effect of freeze-thaw events on mineralization of soil-nitrogen, Biol. Fertil. Soils, 14, 116, 10.1007/BF00336260
Edgar, 2010, Search and clustering orders of magnitude faster than BLAST, Bioinformatics, 26, 2460, 10.1093/bioinformatics/btq461
Edgar, 2011, UCHIME improves sensitivity and speed of chimera detection, Bioinformatics, 27, 2194, 10.1093/bioinformatics/btr381
Elliott, 2009, Freeze-thaw cycle amplitude and freezing rate effects on extractable nitrogen in a temperate old field soil, Biol. Fertil. Soils, 45, 469, 10.1007/s00374-009-0356-0
Faith, 1992, Conservation evaluation and phylogenetic diversity, Biol. Conserv., 61, 1, 10.1016/0006-3207(92)91201-3
Food and Agriculture Organization of the United Nations., FAO-UNESCO., 1988. Soil Map of the World, Rome, Italy.
Fernández-Martínez, 2017, Microbial succession dynamics along glacier forefield chronosequences in Tierra del Fuego (Chile), Polar Biol., 1
Foesel, 2013, Blastocatella fastidiosa gen. nov., sp nov., isolated from semiarid savanna soil - the first described species of Acidobacteria subdivision 4, Syst. Appl. Microbiol., 36, 82, 10.1016/j.syapm.2012.11.002
Freppaz, 2007, Simulating soil freeze/thaw cycles typical of winter alpine conditions: implications for N and P availability, Appl. Soil Ecol., 35, 247, 10.1016/j.apsoil.2006.03.012
Gao, 2015, Release of carbon and nitrogen from alpine soils during thawing periods in the Eastern Qinghai-Tibet Plateau, Water Air Soil Pollut., 226
Gema, 2009, Adaptation of soil microbial communities to temperature: comparison of fungi and bacteria in a laboratory experiment, Glob. Change Biol., 15, 2950, 10.1111/j.1365-2486.2009.01882.x
Halstead, 1999, Potential for chlorate interference in ion chromatographic determination of total nitrogen in natural waters following alkaline persulfate digestion, J. Chromatogr. A, 857, 337, 10.1016/S0021-9673(99)00757-8
Henry, 2007, Soil freeze–thaw cycle experiments: trends, methodological weaknesses and suggested improvements, Soil Biol. Biochem., 39, 977, 10.1016/j.soilbio.2006.11.017
Hentschel, 2008, Repeated freeze-thaw events affect leaching losses of nitrogen and dissolved organic matter in a forest soil, J. Plant Nutr. Soil Sci., 171, 699, 10.1002/jpln.200700154
Holtan-Hartwig, 2002, Low temperature control of soil denitrifying communities: kinetics of N2O production and reduction, Soil Biol. Biochem., 34, 1797, 10.1016/S0038-0717(02)00169-4
Jones, 2006, Experimental evaluation of methods to quantify dissolved organic nitrogen (DON) and dissolved organic carbon (DOC) in soil, Soil Biol. Biochem., 38, 991, 10.1016/j.soilbio.2005.08.012
Jones, 2014, Recently identified microbial guild mediates soil N2O sink capacity, Nat. Clim. Change, 4, 801, 10.1038/nclimate2301
Jorquera, 2016, Rhizobacterial community structures associated with native plants grown in chilean extreme environments, Microb. Ecol., 72, 633, 10.1007/s00248-016-0813-x
Kawata, 1984, Studies on lytic enzymes toward cariogenic streptococci .9. Isolation of bacteriolytic endopeptidase from a strain of Cytophaga and its application to preparation of hydrosoluble polysaccharide peptide from staphylococcus-epidermidis peptidoglycan, Agric. Biol. Chem. Tokyo, 48, 2253
Kielak, 2016, The ecology of acidobacteria: moving beyond genes and genomes, Front. Microbiol., 7, 10.3389/fmicb.2016.00744
Koponen, 2016, Soil bacterial growth after a freezing/thawing event, Soil Biol. Biochem., 100, 229, 10.1016/j.soilbio.2016.06.029
Koponen, 2006, Microbial communities, biomass, and activities in soils as affected by freeze thaw cycles, Soil Biol. Biochem., 38, 1861, 10.1016/j.soilbio.2005.12.010
Lee, 2014, Genomic analysis of Chthonomonas calidirosea, the first sequenced isolate of the phylum Armatimonadetes, ISME J., 8, 1522, 10.1038/ismej.2013.251
Li, 2017, Effects of snow absence on winter soil nitrogen dynamics in a subalpine spruce forest of southwestern China, Geoderma, 307, 107, 10.1016/j.geoderma.2017.08.003
LiFeng, 2001
Livesemb, 2009, Effects of freeze-thaw on C and N release from soils below different vegetation in a montane system: a laboratory experiment, Glob. Change Biol., 15, 876, 10.1111/j.1365-2486.2008.01722.x
LuR, 2000
Mannisto, 2009, Effect of freeze-thaw cycles on bacterial communities of arctic tundra soil, Microb. Ecol., 58, 621, 10.1007/s00248-009-9516-x
Matzner, 2010, Do freeze-thaw events enhance C and N losses from soils of different ecosystems? A review, Eur. J. Soil Sci., 59, 274, 10.1111/j.1365-2389.2007.00992.x
McMahon, 2017, Shifting patterns microbial N-metabolism across seasons in upland Alaskan tundra soils, Soil Biol. Biochem., 105, 96, 10.1016/j.soilbio.2016.11.012
Miller, 2008, Crop residue influence on denitrification, N2O emissions and denitrifier community abundance in soil, Soil Biol. Biochem., 40, 2553, 10.1016/j.soilbio.2008.06.024
Mulvaney, 1996, Nitrogen - inorganic forms, Methods Soil Anal., 3, 1123
Nannipieri, 2009, The chemical and functional characterization of soil N and its biotic components, Soil Biol. Biochem., 41, 2357, 10.1016/j.soilbio.2009.07.013
Pagé, 2015, Salix purpurea stimulates the expression of specific bacterial xenobiotic degradation genes in a soil contaminated with hydrocarbons, PLoS One, 10, 10.1371/journal.pone.0132062
Pelster, 2013, Crop residue incorporation alters soil nitrous oxide emissions during freeze—thaw cycles, Can. J. Soil Sci., 93, 415, 10.4141/cjss2012-043
Peres-Neto, 2001, How well do multivariate data sets match? The advantages of a Procrustean superimposition approach over the Mantel test, Oecologia, 129, 169, 10.1007/s004420100720
Pinnell, 2014, Recovering glycoside hydrolase genes from active tundra cellulolytic bacteria, Can. J. Microbiol., 60, 469, 10.1139/cjm-2014-0193
Quast, 2013, The SILVA ribosomal RNA gene database project: improved data processing and web-based tools, Nucleic Acids Res., 41, D590, 10.1093/nar/gks1219
Ransom-Jones, 2012, The Fibrobacteres: an important phylum of cellulose-degrading bacteria, Microb. Ecol., 63, 267, 10.1007/s00248-011-9998-1
Rasche, 2011, Seasonality and resource availability control bacterial and archaeal communities in soils of a temperate beech forest, ISME J., 5, 389, 10.1038/ismej.2010.138
Rossi, 2013, Distribution and identity of Bacteria in subarctic permafrost thaw ponds, Aquat. Microb. Ecol., 69, 231, 10.3354/ame01634
Sawicka, 2010, Effects of freeze-thaw cycles on anaerobic microbial processes in an Arctic intertidal mud flat, ISME J., 4, 585, 10.1038/ismej.2009.140
Schinner, 1995, Methods in soil biology, J. Ecol., 85, 404
Shannon, 1997, The mathematical theory of communication. 1963, M.d. Comput. Comput. Med. Pract., 14, 306
Smith, 2010, Season and management related changes in the diversity of nitrifying and denitrifying bacteria over winter and spring, Appl. Soil Ecol., 44, 138, 10.1016/j.apsoil.2009.11.004
Song, 2015, Identification of benzo[a]pyrene-metabolizing bacteria in forest soils by using DNA-Based stable-isotope probing, Appl. Environ. Microb., 81, 7368, 10.1128/AEM.01983-15
Song, 2017, Altered soil carbon and nitrogen cycles due to the freeze-thaw effect: a meta-analysis, Soil Biol. Biochem., 109, 35, 10.1016/j.soilbio.2017.01.020
Stres, 2010, Frequent freeze-thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment, FEMS Microbiol. Ecol., 74, 323, 10.1111/j.1574-6941.2010.00951.x
Stres, 2010, Frequent freeze–thaw cycles yield diminished yet resistant and responsive microbial communities in two temperate soils: a laboratory experiment, FEMS Microbiol. Ecol., 74, 323, 10.1111/j.1574-6941.2010.00951.x
Sul, 2011, Bacterial community comparisons by taxonomy-supervised analysis independent of sequence alignment and clustering, Proc. Natl. Acad. Sci. U. S. A., 108, 14637, 10.1073/pnas.1111435108
Sulkava, 2003, Effects of hard frost and freeze-thaw cycles on decomposer communities and N mineralisation in boreal forest soil, Appl. Soil Ecol., 22, 225, 10.1016/S0929-1393(02)00155-5
Turner, 2010, Net nitrogen mineralization and leaching in response to warming and nitrogen deposition in a temperate old field: the importance of winter temperature, Oecologia, 162, 227, 10.1007/s00442-009-1435-5
Vestgarden, 2009, Effects of freeze-thaw on C and N release from soils below different vegetation in a montane system: a laboratory experiment, Glob. Change Biol., 15, 876, 10.1111/j.1365-2486.2008.01722.x
Vranova, 2013, Proteolytic activity in soil: a review, Appl. Soil Ecol., 70, 23, 10.1016/j.apsoil.2013.04.003
Wallenstein, 2012, A trait-based framework for predicting when and where microbial adaptation to climate change will affect ecosystem functioning, Biogeochemistry, 109, 35, 10.1007/s10533-011-9641-8
Wallenstein, 2009, Seasonal variation in enzyme activities and temperature sensitivities in Arctic tundra soils, Glob. Change Biol., 15, 1631, 10.1111/j.1365-2486.2008.01819.x
Wang, 2017, Shifts in microbial communities in soil, rhizosphere and roots of two major crop systems under elevated CO2 and O-3, Sci. Rep.-UK, 7
Wertz, 2016, The amplitude of soil freeze-thaw cycles influences temporal dynamics of N 2 O emissions and denitrifier transcriptional activity and community composition, Biol. Fertil. Soils, 1
Yergeau, 2008, Responses of Antarctic soil microbial communities and associated functions to temperature and freeze-thaw cycle frequency, Environ. Microbiol., 10, 2223, 10.1111/j.1462-2920.2008.01644.x
Zhang, 2008, Seasonal variations in nitrogen mineralization under three land use types in a grassland landscape, Acta Oecologica, 34, 322, 10.1016/j.actao.2008.06.004
Zhang, 2016, Diversity and succession of actinobacteria in the forelands of the Tianshan Glacier, China, Geomicrobiol. J., 33, 716, 10.1080/01490451.2015.1085468
Zhou, 2011, Effect of freezing-thawing on nitrogen mineralization in vegetation soils of four landscape zones of Changbai Mountain, Ann. For. Sci., 68, 943, 10.1007/s13595-011-0100-4