Modelling biofilm growth in the presence of carbon dioxide and water flow in the subsurface

Advances in Water Resources - Tập 33 - Trang 762-781 - 2010
Anozie Ebigbo1, Rainer Helmig1, Alfred B. Cunningham2, Holger Class1, Robin Gerlach2
1Department of Hydromechanics and Modelling of Hydrosystems, Universität Stuttgart, Pfaffenwaldring 61, 70569 Stuttgart, Germany
2Center for Biofilm Engineering, Montana State University, Bozeman, MT 59717, USA

Tài liệu tham khảo

Batzle, 1992, Seismic properties of pore fluids, Geophysics, 57, 1396, 10.1190/1.1443207 Bear, 1979 Bryers, 2000, Biofilms II: Process Analysis and Applications, 3 Cary, 1994, Estimating the surface-area of fluid-phase interfaces in porous-media, J Contam Hydrol, 15, 243, 10.1016/0169-7722(94)90029-9 Chen-Charpentier, 1999, Numerical simulation of biofilm growth in porous media, J Comput Appl Math, 103, 55, 10.1016/S0377-0427(98)00240-4 Clement, 1996, Macroscopic models for predicting changes in saturated porous media properties caused by microbial growth, Ground Water, 34, 934, 10.1111/j.1745-6584.1996.tb02088.x Clement, 1999, Modeling bacterial transport and accumulation processes in saturated porous media: a review, Adv Nucl Sci Technol, 26, 59, 10.1007/0-306-47088-8_3 Cooke, 2005, Modelling species fate and porous media effects for landfill leachate flow, Can Geotech J, 42, 1116, 10.1139/t05-039 Corapcioglu, 1984, Transport and fate of microorganisms in porous media: a theoretical investigation, J Hydrol, 72, 149, 10.1016/0022-1694(84)90189-6 Corey, 1994 Cunningham, 1991, Influence of biofilm accumulation on porous media hydrodynamics, Environ Sci Technol, 25, 1305, 10.1021/es00019a013 Cunningham, 2009, Microbially enhanced geologic containment of sequestered supercritical CO2, Energy Procedia, 1, 3245, 10.1016/j.egypro.2009.02.109 De Beer, 1994, Liquid flow in heterogeneous biofilms, Biotechnol Bioeng, 44, 636, 10.1002/bit.260440510 Ebigbo, 2007, CO2 leakage through an abandoned well: problem-oriented benchmarks, Comput Geosci, 11, 103, 10.1007/s10596-006-9033-7 Fenghour, 1998, The viscosity of carbon dioxide, J Phys Chem Ref Data, 27, 31, 10.1063/1.556013 Foppen, 2007, Measuring and modelling straining of Escherichia coli in saturated porous media, J Contam Hydrol, 93, 236, 10.1016/j.jconhyd.2007.03.001 Gargiulo, 2007, Bacteria transport and deposition under unsaturated conditions: the role of the matrix grain size and the bacteria surface protein, J Contam Hydrol, 92, 255, 10.1016/j.jconhyd.2007.01.009 Gerke, 1996, Macroscopic representation of structural geometry for simulating water and solute movement in dual-porosity media, Adv Water Resour, 19, 343, 10.1016/0309-1708(96)00012-7 Golfier, 2009, Biofilms in porous media: development of macroscopic transport equations via volume averaging with closure for local mass equilibrium conditions, Adv Water Resour, 32, 463, 10.1016/j.advwatres.2008.11.012 Ham, 2007, Numerical experiments for bioclogging in porous media, Environ Technol, 28, 1079, 10.1080/09593332808618871 Helmig, 1997 Hornberger, 1992, Bacterial transport in porous media: evaluation of a model using laboratory experiments, Water Resour Res, 28, 915, 10.1029/91WR02980 Kapellos, 2007, Hierarchical simulator of biofilm growth and dynamics in granular porous materials, Adv Water Resour, 30, 1648, 10.1016/j.advwatres.2006.05.030 Kim, 2006, Numerical analysis of bacterial transport in saturated porous media, Hydrol Process, 20, 1177, 10.1002/hyp.5930 Kopp, A., Binning, P. J., Johannsen, K., Class, H., Helmig, R. A Contribution to Risk Analysis for Leakage through Abandoned Wells in Geological CO2 Storage. Submitted to Advances in Water Resources submitted for publication. Kopp, 2009, Numerical simulation of temperature changes caused by CO2 injection in geological reservoirs, 439 Korteland, 2009, What is the correct definition of average pressure?, Transp Porous Med Maggi, 2007, Coupled moisture and microbial dynamics in unsaturated soils, Water Resour Res, 43, W07444, 10.1029/2006WR005367 Mitchell, 2008, Resilience of planktonic and biofilm cultures to supercritical CO2, J Supercrit Fluids, 47, 318, 10.1016/j.supflu.2008.07.005 Mitchell, 2009, Biofilm enhanced geologic sequestration of supercritical CO2, Int J Greenhouse Gas Control, 3, 90, 10.1016/j.ijggc.2008.05.002 Mostafa, 2007, Conceptual models and simulations for biological clogging in unsaturated soils, Vadose Zone J, 6, 175, 10.2136/vzj2006.0033 Murphy, 2000, Modeling microbial processes in porous media, Hydrogeol J, 8, 142, 10.1007/s100409900043 Niemet, 2002, Relationships between gas–liquid interfacial surface area, liquid saturation, and light transmission in variably saturated porous media, Water Resour Res, 38, 1135, 10.1029/2001WR000785 Nordbotten, 2005, Semi-analytical solution for CO2 leakage through an abandoned well, Environ Sci Technol, 39, 602, 10.1021/es035338i Oldenburg, 2008, Screening and ranking framework for geologic CO2 storage site selection on the basis of health, safety, and environmental risk, Environ Geol, 54, 1687, 10.1007/s00254-007-0947-8 Picioreanu, 2001, Two-dimensional model of biofilm detachment caused by internal stress from liquid flow, Biotechnol Bioeng, 72, 205, 10.1002/1097-0290(20000120)72:2<205::AID-BIT9>3.0.CO;2-L Pruess, 2004, Thermal Effects During CO2 Leakage from a Geologic Storage Reservoir Pruess, 2005, Numerical studies of fluid leakage from a geologic disposal reservoir for co2 show self-limiting feedback between fluid flow and heat transfer, Geophys Res Lett, 32, L14404, 10.1029/2005GL023250 Rittmann, 1982, The effect of shear stress on biofilm loss rate, Biotechnol Bioeng, 24, 501, 10.1002/bit.260240219 Rittmann, 1993, The significance of biofilms in porous media, Water Resour Res, 29, 2195, 10.1029/93WR00611 Rockhold, 2002, Considerations for modeling bacterial-induced changes in hydraulic properties of variably saturated porous media, Adv Water Resour, 25, 477, 10.1016/S0309-1708(02)00023-4 Rockhold, 2004, Coupled microbial and transport processes in soils, Vadose Zone J, 3, 368, 10.2136/vzj2004.0368 Schaefer, 1998, Transport of bacteria in unsaturated porous media, J Contam Hydrol, 33, 149, 10.1016/S0169-7722(98)00069-2 Seki, 2001, A mathematical model for biological clogging of uniform porous media, Water Resour Res, 37, 2995, 10.1029/2001WR000395 Span, 1996, A new equation of state for carbon dioxide covering the fluid region from the triple-point temperature to 1100K at pressures up to 800MPa, J Phys Chem Ref Data, 25, 1509, 10.1063/1.555991 Speitel, 1987, Biofilm shearing under dynamic conditions, J Environ Eng-Asce, 113, 464, 10.1061/(ASCE)0733-9372(1987)113:3(464) Stewart, 1998, A review of experimental measurements of effective diffusive permeabilities and effective diffusion coefficients in biofilms, Biotechnol Bioeng, 59, 261, 10.1002/(SICI)1097-0290(19980805)59:3<261::AID-BIT1>3.0.CO;2-9 Stoodley, 1994, Liquid flow in biofilm systems, Appl Environ Microbiol, 60, 2711, 10.1128/AEM.60.8.2711-2716.1994 Tan, 1994, Transport of bacteria in an aquifer sand: experiments and model simulations, Water Resour Res, 30, 3243, 10.1029/94WR02032 Taylor, 1990, Biofilm growth and the related changes in the physical properties of a porous medium 1. Experimental investigation, Water Resour Res, 26, 2153 Taylor, 1990, Substrate and biomass transport in a porous medium, Water Resour Res, 26, 2181, 10.1029/WR026i009p02181 Taylor, 1990, Biofilm growth and the related changes in the physical properties of a porous medium 2. Permeability, Water Resour Res, 26, 2161, 10.1029/WR026i009p02161 Thullner, 2004, Modeling of a microbial growth experiment with bioclogging in a two-dimensional saturated porous media flow field, J Contam Hydrol, 70, 37, 10.1016/j.jconhyd.2003.08.008 Thullner, 2002, Influence of microbial growth on hydraulic properties of pore networks, Transp Porous Med, 49, 99, 10.1023/A:1016030112089 van Loosdrecht, 1990, Influence of interfaces on microbial activity, Microbiol Mol Biol Rev, 54, 75 van Noorden, 2010, An upscaled model for biofim growth in a thin strip, Water Resources Research, 10.1029/2009WR008217 Vandevivere, 1995, Bacterial clogging of porous-media—a new modeling approach, Biofouling, 8, 281, 10.1080/08927019509378281 Vandevivere, 1992, Effect of bacterial extracellular polymers on the saturated hydraulic conductivity of sand columns, Appl Environ Microbiol, 58, 1690, 10.1128/AEM.58.5.1690-1698.1992 Wan, 1994, Influence of the gas–water interface on transport of microorganisms through unsaturated porous-media, Appl Environ Microbiol, 60, 509, 10.1128/AEM.60.2.509-516.1994 Wood, 2007, Biological processes in porous media: from the pore scale to the field, Adv Water Resour, 30, 1387, 10.1016/j.advwatres.2006.05.031 Wood, 2002, Calculation of effective diffusivities for biofilms and tissues, Biotechnol Bioeng, 77, 495, 10.1002/bit.10075 Xu, 2004, Reactive transport modeling of injection well scaling and acidizing at Tiwi field, Philippines, Geothermics, 33, 477, 10.1016/j.geothermics.2003.09.012 Yarwood, 2006, Impact of microbial growth on water flow and solute transport in unsaturated porous media, Water Resour Res, 42, W10405, 10.1029/2005WR004550 Zekri, 2001, Microbial enhanced oil recovery—a short review, Oil Gas Eur Mag, 1, 22 Zhang, 2006, Sterilization using high-pressure carbon dioxide, J Supercrit Fluids, 38, 354, 10.1016/j.supflu.2005.05.005 Zhang, 1994, Density, porosity, and pore structure of biofilms, Water Res, 28, 2267, 10.1016/0043-1354(94)90042-6