Mixture modeling of microarray gene expression data

BMC Proceedings - Tập 1 Số S1 - 2007
Yang Yang1, Adam P Tashman1, Jung Yeon Lee1, Seungtai Yoon2, Wenyang Mao1, Kwangmi Ahn3, Wonkuk Kim1, Nancy R. Mendell1, Derek Gordon4, Stephen J. Finch1
1Department of Applied Mathematics and Statistics, Stony Brook University, Stony Brook, New York, 11790, USA
2Cold Spring Harbor Laboratory Cold Spring Harbor, New York, 11724 USA
3Department of Health Evaluation Sciences, A210, Penn State College of Medicine, 600 Centerview Drive, Hershey, Pennsylvania, 17033, USA
4Department of Genetics, Rutgers University, 145 Bevier Road, Room 128, Piscataway, New Jersey, 08854, USA

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McLachlan GJ, Bean RW, Peel D: A mixture model-based approach to the clustering of microarray expression data. Bioinformatics. 2002, 18: 413-422. 10.1093/bioinformatics/18.3.413.

Maclean CJ, Morton NE, Elston RC: Skewness in commingled distributions. Biometrics. 1976, 32: 695-699. 10.2307/2529760.

Box GEP, Cox DR: An analysis of transformations. J R Stat Soc Ser B. 1964, 26: 211-246.

Simon HA: Spurious correlation: a causal interpretation. J Am Stat Assoc. 1954, 49: 467-479. 10.2307/2281124.

Gorsuch RL: Factor Analysis. 1983, Hillsdale, NJ: Lawrence Erlbaum

McLachlan GF, Peel D, Bean RW: Modelling high dimensional data by mixtures of factor analyzers. Comput Stat Data Anal. 2003, 41: 379-388. 10.1016/S0167-9473(02)00183-4.

Yoon S, Suh YJ, Mendell NR, Ye KQ: A Bayesian approach for applying Haseman-Elston methods. BMC Genetics. 2005, 6 (Suppl 1): S39-10.1186/1471-2156-6-S1-S39.

Morley M, Molony CM, Weber TM, Devlin JL, Ewens KG, Spielman RS, Cheung VG: Genetic analysis of genome-wide variation in human gene expression. Nature. 2004, 430: 743-747. 10.1038/nature02797.

Cheung VG, Spielman RS, Ewens KG, Weber TM, Morley M, Burdick JT: Mapping determinants of human gene expression by regional and genome-wide association. Nature. 2005, 437: 1365-1369. 10.1038/nature04244.

Filliben JJ: The probability plot correlation coefficient test for normality. Technometrics. 1975, 17: 111-117. 10.2307/1268008.

Ning YM, Finch SJ: The null distribution of the likelihood ratio test for a mixture of two normals after a restricted Box-Cox transformation. Comm Stat Simul Comp. 2000, 29: 449-461. 10.1080/03610910008813621.

Sokal RR, Rohlf FJ: Biometry. 1995, New York: Freeman

Fraley C, Raftery AE: Model-based clustering, discriminant analysis, and density estimation. J Am Stat Assoc. 2002, 97: 611-631. 10.1198/016214502760047131.

Casella G, Berger RL: Statistical Inference. 1990, Belmont, CA: Wadsworth & Brooks/Cole

Fleiss JL: Measuring nominal scale agreement among many raters. Psychol Bull. 1971, 76: 378-382. 10.1037/h0031619.

Fleiss JL: Statistical Methods for Rates and Proportions. 1981, New York: John Wiley & Sons

Yoon S: Bayesian factor screening. Dissertation. 2006, Stony Brook University, Department of Applied Mathematics and Statistics

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