Mitochondrial transfection for studying organellar DNA repair, genome maintenance and aging
Tài liệu tham khảo
Aamann, 2010, Cockayne syndrome group B protein promotes mitochondrial DNA stability by supporting the DNA repair association with the mitochondrial membrane, FASEB J., 24, 2334, 10.1096/fj.09-147991
Akbari, 2008, Mitochondrial base excision repair of uracil and AP sites takes place by single-nucleotide insertion and long-patch DNA synthesis, DNA Repair (Amst.), 7, 605, 10.1016/j.dnarep.2008.01.002
Alexeyev, 2008, Selective elimination of mutant mitochondrial genomes as therapeutic strategy for the treatment of NARP and MILS syndromes, Gene Ther., 15, 516, 10.1038/gt.2008.11
Bacman, 2010, Organ-specific shifts in mtDNA heteroplasmy following systemic delivery of a mitochondria-targeted restriction endonuclease, Gene Ther., 17, 713, 10.1038/gt.2010.25
Bacman, 2007, Modulating mtDNA heteroplasmy by mitochondria-targeted restriction endonucleases in a ‘differential multiple cleavage-site’ model, Gene Ther., 14, 1309, 10.1038/sj.gt.3302981
Bayona-Bafaluy, 2005, Rapid directional shift of mitochondrial DNA heteroplasmy in animal tissues by a mitochondrially targeted restriction endonuclease, Proc. Natl. Acad. Sci. U.S.A., 102, 14392, 10.1073/pnas.0502896102
Boddapati, 2005, Mitochondriotropic liposomes, J. Liposome Res., 15, 49, 10.1081/LPR-64958
Boesch, 2010, Membrane association of mitochondrial DNA facilitates base excision repair in mammalian mitochondria, Nucleic Acids Res., 38, 1478, 10.1093/nar/gkp1143
Boesch, 2009, Plant mitochondria possess a short-patch base excision DNA repair pathway, Nucleic Acids Res., 37, 5690, 10.1093/nar/gkp606
Boesch, 2010, DNA repair in organelles: pathways, organization, regulation, relevance in disease and aging, Biochim. Biophys. Acta, 1813, 186, 10.1016/j.bbamcr.2010.10.002
Bokori-Brown, 2006, Expression of algal nuclear ATP synthase subunit 6 in human cells results in protein targeting to mitochondria but no assembly into ATP synthase, Rejuvenation Res., 9, 455, 10.1089/rej.2006.9.455
Bolender, 2008, Multiple pathways for sorting mitochondrial precursor proteins, EMBO Rep., 9, 42, 10.1038/sj.embor.7401126
Bolle, 2007, Plastid mRNAs are neither spliced nor edited in maize and cauliflower mitochondrial in organello systems, RNA, 13, 2061, 10.1261/rna.758307
Bolle, 2006, Mono- and dicotyledonous plant-specific RNA editing sites are correctly edited in both in organello systems, FEBS Lett., 580, 4443, 10.1016/j.febslet.2006.07.011
Bonnefoy, 2007, Directed alteration of Saccharomyces cerevisiae mitochondrial DNA by biolistic transformation and homologous recombination, Methods Mol. Biol., 372, 153, 10.1007/978-1-59745-365-3_11
Bonnefoy, 2007, Genetic transformation of Saccharomyces cerevisiae and Chlamydomonas reinhardtii mitochondria, Methods Cell Biol., 80, 525, 10.1016/S0091-679X(06)80026-9
Bonnet, 2008, The optimized allotopic expression of ND1 or ND4 genes restores respiratory chain complex I activity in fibroblasts harboring mutations in these genes, Biochim. Biophys. Acta, 1783, 1707, 10.1016/j.bbamcr.2008.04.018
Bonnet, 2007, Allotopic mRNA localization to the mitochondrial surface rescues respiratory chain defects in fibroblasts harboring mitochondrial DNA mutations affecting complex I or v subunits, Rejuvenation Res., 10, 127, 10.1089/rej.2006.0526
Cai, 2005, Mitochondrial targeting of human O6-methylguanine DNA methyltransferase protects against cell killing by chemotherapeutic alkylating agents, Cancer Res., 65, 3319, 10.1158/0008-5472.CAN-04-3335
Canugovi, 2010, The mitochondrial transcription factor A functions in mitochondrial base excision repair, DNA Repair (Amst.), 9, 1080, 10.1016/j.dnarep.2010.07.009
Cappadocia, 2010, Crystal structures of DNA-Whirly complexes and their role in Arabidopsis organelle genome repair, Plant Cell, 22, 1849, 10.1105/tpc.109.071399
Castandet, 2010, Intron RNA editing is essential for splicing in plant mitochondria, Nucleic Acids Res., 38, 7112, 10.1093/nar/gkq591
Chatterjee, 2006, Targeting of mutant hogg1 in mammalian mitochondria and nucleus: effect on cellular survival upon oxidative stress, BMC Cancer, 6, 235, 10.1186/1471-2407-6-235
Chatterjee, 2001, Uracil-DNA glycosylase-deficient yeast exhibit a mitochondrial mutator phenotype, Nucleic Acids Res., 29, 4935, 10.1093/nar/29.24.4935
Chen, 2005, The ins and outs of DNA transfer in bacteria, Science, 310, 1456, 10.1126/science.1114021
Choury, 2006, RNA editing site recognition in heterologous plant mitochondria, Curr. Genet., 50, 405, 10.1007/s00294-006-0100-3
Choury, 2004, Different patterns in the recognition of editing sites in plant mitochondria, Nucleic Acids Res., 32, 6397, 10.1093/nar/gkh969
Choury, 2005, Gene expression studies in isolated mitochondria: Solanum tuberosum rps10 is recognized by cognate potato but not by the transcription, splicing and editing machinery of wheat mitochondria, Nucleic Acids Res., 33, 7058, 10.1093/nar/gki1017
Clark, 1982, Mitochondrial transformation of mammalian cells, Nature, 295, 605, 10.1038/295605a0
Collombet, 1997, Introduction of plasmid DNA into isolated mitochondria by electroporation. A novel approach toward gene correction for mitochondrial disorders, J. Biol. Chem., 272, 5342, 10.1074/jbc.272.8.5342
Cudd, 1984, Liposomes injected intravenously into mice associate with liver mitochondria, Biochim. Biophys. Acta, 774, 169, 10.1016/0005-2736(84)90288-8
Cudd, 1985, Intracellular fate of liposome-encapsulated DNA in mouse liver. Analysis using electron microscope autoradiography and subcellular fractionation, Biochim. Biophys. Acta, 845, 477, 10.1016/0167-4889(85)90214-9
Cudd, 1986, Interaction of intravenously injected liposomes with mouse liver mitochondria. A fluorescence and electron microscopy study, Biochim. Biophys. Acta, 860, 201, 10.1016/0005-2736(86)90516-X
D'Souza, 2005, Mitochondrial leader sequence – plasmid DNA conjugates delivered into mammalian cells by DQAsomes co-localize with mitochondria, Mitochondrion, 5, 352, 10.1016/j.mito.2005.07.001
D'Souza, 2007, Gene therapy of the other genome: the challenges of treating mitochondrial DNA defects, Pharm. Res., 24, 228, 10.1007/s11095-006-9150-y
D'Souza, 2003, DQAsome-mediated delivery of plasmid DNA toward mitochondria in living cells, J. Control. Release, 92, 189, 10.1016/S0168-3659(03)00297-9
Dassa, 2009, Expression of the alternative oxidase complements cytochrome c oxidase deficiency in human cells, EMBO Mol. Med., 1, 30, 10.1002/emmm.200900001
de la Loza, 2009, A novel approach for organelle-specific DNA damage targeting reveals different susceptibility of mitochondrial DNA to the anticancer drugs camptothecin and topotecan, Nucleic Acids Res., 37, e26, 10.1093/nar/gkn1087
Dobson, 2000, Enhanced mitochondrial DNA repair and cellular survival after oxidative stress by targeting the human 8-oxoguanine glycosylase repair enzyme to mitochondria, J. Biol. Chem., 275, 37518, 10.1074/jbc.M000831200
Druzhyna, 2005, Cytokines induce nitric oxide-mediated mtDNA damage and apoptosis in oligodendrocytes. Protective role of targeting 8-oxoguanine glycosylase to mitochondria, J. Biol. Chem., 280, 21673, 10.1074/jbc.M411531200
Ellouze, 2008, Optimized allotopic expression of the human mitochondrial ND4 prevents blindness in a rat model of mitochondrial dysfunction, Am. J. Hum. Genet., 83, 373, 10.1016/j.ajhg.2008.08.013
Estevez, 1999, T7 RNA polymerase-driven transcription in mitochondria of Leishmania tarentolae and Trypanosoma brucei, Mol. Biochem. Parasitol., 103, 251, 10.1016/S0166-6851(99)00139-5
Farre, 2001, Gene expression in isolated plant mitochondria: high fidelity of transcription, splicing and editing of a transgene product in electroporated organelles, Nucleic Acids Res., 29, 2484, 10.1093/nar/29.12.2484
Farre, 2002, RNA splicing in higher plant mitochondria: determination of functional elements in group II intron from a chimeric cox II gene in electroporated wheat mitochondria, Plant J., 29, 203, 10.1046/j.1365-313x.2002.01207.x
Farre, 2001, cis Recognition elements in plant mitochondrion RNA editing, Mol. Cell. Biol., 21, 6731, 10.1128/MCB.21.20.6731-6737.2001
Fishel, 2003, Imbalancing the DNA base excision repair pathway in the mitochondria; targeting and overexpressing N-methylpurine DNA glycosylase in mitochondria leads to enhanced cell killing, Cancer Res., 63, 608
Flierl, 2003, Targeted delivery of DNA to the mitochondrial compartment via import sequence-conjugated peptide nucleic acid, Mol. Ther., 7, 550, 10.1016/S1525-0016(03)00037-6
Fox, 1988, Plasmids can stably transform yeast mitochondria lacking endogenous mtDNA, Proc. Natl. Acad. Sci. U.S.A., 85, 7288, 10.1073/pnas.85.19.7288
Frossi, 2002, H(2)O(2) induces translocation of APE/Ref-1 to mitochondria in the Raji B-cell line, J. Cell. Physiol., 193, 180, 10.1002/jcp.10159
Fukui, 2009, Mechanisms of formation and accumulation of mitochondrial DNA deletions in aging neurons, Hum. Mol. Genet., 18, 1028, 10.1093/hmg/ddn437
Griffiths, 2009, Dynamic compartmentalization of base excision repair proteins in response to nuclear and mitochondrial oxidative stress, Mol. Cell. Biol., 29, 794, 10.1128/MCB.01357-08
Guy, 2002, Rescue of a mitochondrial deficiency causing Leber Hereditary Optic Neuropathy, Ann. Neurol., 52, 534, 10.1002/ana.10354
Ho, 2007, Yeast apurinic/apyrimidinic endonuclease Apn1 protects mammalian neuronal cell line from oxidative stress, J. Neurochem., 102, 13, 10.1111/j.1471-4159.2007.04490.x
Ikeda, 2002, Differential intracellular localization of the human and mouse endonuclease III homologs and analysis of the sorting signals, DNA Repair (Amst.), 1, 847, 10.1016/S1568-7864(02)00145-3
Inoki, 2000, Proteoliposomes colocalized with endogenous mitochondria in mouse fertilized egg, Biochem. Biophys. Res. Commun., 278, 183, 10.1006/bbrc.2000.3765
Iyer, 2009, Recombinant mitochondrial transcription factor A with N-terminal mitochondrial transduction domain increases respiration and mitochondrial gene expression, Mitochondrion, 9, 196, 10.1016/j.mito.2009.01.012
Johnston, 1988, Mitochondrial transformation in yeast by bombardment with microprojectiles, Science, 240, 1538, 10.1126/science.2836954
Kagawa, 1997, Gene therapy of mitochondrial diseases using human cytoplasts, Gene Ther., 4, 6, 10.1038/sj.gt.3300347
Kaltimbacher, 2006, mRNA localization to the mitochondrial surface allows the efficient translocation inside the organelle of a nuclear recoded ATP6 protein, RNA, 12, 1408, 10.1261/rna.18206
Kamenisch, 2010, Proteins of nucleotide and base excision repair pathways interact in mitochondria to protect from loss of subcutaneous fat, a hallmark of aging, J. Exp. Med., 207, 379, 10.1084/jem.20091834
Katrangi, 2007, Xenogenic transfer of isolated murine mitochondria into human rho0 cells can improve respiratory function, Rejuvenation Res., 10, 561, 10.1089/rej.2007.0575
Keeney, 2009, Mitochondrial gene therapy augments mitochondrial physiology in a Parkinson's disease cell model, Hum. Gene Ther., 20, 897, 10.1089/hum.2009.023
Khan, 2004, Development of mitochondrial gene replacement therapy, J. Bioenerg. Biomembr., 36, 387, 10.1023/B:JOBB.0000041773.20072.9e
King, 1988, Injection of mitochondria into human cells leads to a rapid replacement of the endogenous mitochondrial DNA, Cell, 52, 811, 10.1016/0092-8674(88)90423-0
King, 1989, Human cells lacking mtDNA: repopulation with exogenous mitochondria by complementation, Science, 246, 500, 10.1126/science.2814477
King, 1992, Defects in mitochondrial protein synthesis and respiratory chain activity segregate with the tRNA(Leu(UUR)) mutation associated with mitochondrial myopathy, encephalopathy, lactic acidosis, and stroke-like episodes, Mol. Cell. Biol., 12, 480, 10.1128/MCB.12.2.480
Koczor, 2009, Targeting repair proteins to the mitochondria of mammalian cells through stable transfection, transient transfection, viral transduction, and TAT-mediated protein transduction, Methods Mol. Biol., 554, 233, 10.1007/978-1-59745-521-3_15
Koulintchenko, 2003, Plant mitochondria actively import DNA via the permeability transition pore complex, EMBO J., 22, 1245, 10.1093/emboj/cdg128
Koulintchenko, 2006, Natural competence of mammalian mitochondria allows the molecular investigation of mitochondrial gene expression, Hum. Mol. Genet., 15, 143, 10.1093/hmg/ddi435
Li, 2008, Targeting truncated APE1 in mitochondria enhances cell survival after oxidative stress, Free Radic. Biol. Med., 45, 592, 10.1016/j.freeradbiomed.2008.05.007
Liu, 2010, DNA repair in mammalian mitochondria: much more than we thought?, Environ. Mol. Mutagen., 51, 417
Liu, 2008, Removal of oxidative DNA damage via FEN1-dependent long-patch base excision repair in human cell mitochondria, Mol. Cell. Biol., 28, 4975, 10.1128/MCB.00457-08
Liu, 2006, Mitochondrial retrograde signaling, Annu. Rev. Genet., 40, 159, 10.1146/annurev.genet.40.110405.090613
Manfredi, 2002, Rescue of a deficiency in ATP synthesis by transfer of MTATP6, a mitochondrial DNA-encoded gene, to the nucleus, Nat. Genet., 30, 394, 10.1038/ng851
Minczuk, 2010, Construction and testing of engineered zinc-finger proteins for sequence-specific modification of mtDNA, Nat. Protoc., 5, 342, 10.1038/nprot.2009.245
Minczuk, 2006, Sequence-specific modification of mitochondrial DNA using a chimeric zinc finger methylase, Proc. Natl. Acad. Sci. U.S.A., 103, 19689, 10.1073/pnas.0609502103
Minczuk, 2008, Development of a single-chain, quasi-dimeric zinc-finger nuclease for the selective degradation of mutated human mitochondrial DNA, Nucleic Acids Res., 36, 3926, 10.1093/nar/gkn313
Mitra, 2007, Intracellular trafficking and regulation of mammalian AP-endonuclease 1 (APE1), an essential DNA repair protein, DNA Repair (Amst.), 6, 461, 10.1016/j.dnarep.2006.10.010
Muratovska, 2001, Targeting peptide nucleic acid (PNA) oligomers to mitochondria within cells by conjugation to lipophilic cations: implications for mitochondrial DNA replication, expression and disease, Nucleic Acids Res., 29, 1852, 10.1093/nar/29.9.1852
Nagley, 1988, Assembly of functional proton-translocating ATPase complex in yeast mitochondria with cytoplasmically synthesized subunit 8, a polypeptide normally encoded within the organelle, Proc. Natl. Acad. Sci. U.S.A., 85, 2091, 10.1073/pnas.85.7.2091
Oca-Cossio, 2003, Limitations of allotopic expression of mitochondrial genes in mammalian cells, Genetics, 165, 707, 10.1093/genetics/165.2.707
Ojaimi, 2002, An algal nucleus-encoded subunit of mitochondrial ATP synthase rescues a defect in the analogous human mitochondrial-encoded subunit, Mol. Biol. Cell, 13, 3836, 10.1091/mbc.E02-05-0306
Paul, 2001, Expression of E. coli RecA targeted to mitochondria of human cells, Mutat. Res., 486, 11, 10.1016/S0921-8777(01)00069-6
Perales-Clemente, 2010, Allotopic expression of mitochondrial-encoded genes in mammals: achieved goal, undemonstrated mechanism or impossible task?, Nucleic Acids Res., 39, 225, 10.1093/nar/gkq769
Pinkert, 1997, Mitochondria transfer into mouse ova by microinjection, Transgenic Res., 6, 379, 10.1023/A:1018431316831
Pinkert, 2002, Production of transmitochondrial mice, Methods, 26, 348, 10.1016/S1046-2023(02)00041-5
Rachek, 2004, Endonuclease III and endonuclease VIII conditionally targeted into mitochondria enhance mitochondrial DNA repair and cell survival following oxidative stress, Nucleic Acids Res., 32, 3240, 10.1093/nar/gkh648
Rachek, 2002, Conditional targeting of the DNA repair enzyme hOGG1 into mitochondria, J. Biol. Chem., 277, 44932, 10.1074/jbc.M208770200
Rachek, 2006, Protection of INS-1 cells from free fatty acid-induced apoptosis by targeting hOGG1 to mitochondria, Diabetes, 55, 1022, 10.2337/diabetes.55.04.06.db05-0865
Randolph-Anderson, 1993, Further characterization of the respiratory deficient dum-1 mutation of Chlamydomonas reinhardtii and its use as a recipient for mitochondrial transformation, Mol. Gen. Genet., 236, 235, 10.1007/BF00277118
Rasmussen, 2005, Targeting of O6-MeG DNA methyltransferase (MGMT) to mitochondria protects against alkylation induced cell death, Mitochondrion, 5, 411, 10.1016/j.mito.2005.08.003
Remacle, 2006, High-efficiency biolistic transformation of Chlamydomonas mitochondria can be used to insert mutations in complex I genes, Proc. Natl. Acad. Sci. U.S.A., 103, 4771, 10.1073/pnas.0509501103
Schatz, 1996, The protein import system of mitochondria, J. Biol. Chem., 271, 31763, 10.1074/jbc.271.50.31763
Seibel, 1999, Processing of artificial peptide-DNA-conjugates by the mitochondrial intermediate peptidase (MIP), Biol. Chem., 380, 961, 10.1515/BC.1999.119
Seibel, 1995, Transfection of mitochondria: strategy towards a gene therapy of mitochondrial DNA diseases, Nucleic Acids Res., 23, 10, 10.1093/nar/23.1.10
Seo, 2006, In vivo complementation of complex I by the yeast Ndi1 enzyme. Possible application for treatment of Parkinson disease, J. Biol. Chem., 281, 14250, 10.1074/jbc.M600922200
Shinmura, 2001, The OGG1 gene encodes a repair enzyme for oxidatively damaged DNA and is involved in human carcinogenesis, Antioxid. Redox Signal., 3, 597, 10.1089/15230860152542952
Shokolenko, 2003, The expression of Exonuclease III from E. coli in mitochondria of breast cancer cells diminishes mitochondrial DNA repair capacity and cell survival after oxidative stress, DNA Repair (Amst.), 2, 471, 10.1016/S1568-7864(03)00019-3
Srivastava, 2001, Manipulating mitochondrial DNA heteroplasmy by a mitochondrially targeted restriction endonuclease, Hum. Mol. Genet., 10, 3093, 10.1093/hmg/10.26.3093
Staudinger, 2005, Mitochondrial electroporation and in organello RNA editing of chimeric atp6 transcripts, Mol. Genet. Genomics, 273, 130, 10.1007/s00438-005-1117-x
Staudinger, 2003, Electroporation of isolated higher-plant mitochondria: transcripts of an introduced cox2 gene, but not an atp6 gene, are edited in organello, Mol. Genet. Genomics, 269, 553, 10.1007/s00438-003-0863-x
Stevnsner, 2008, The role of Cockayne Syndrome group B (CSB) protein in base excision repair and aging, Mech. Ageing Dev., 129, 441, 10.1016/j.mad.2008.04.009
Swartzlander, 2010, Regulation of base excision repair: Ntg1 nuclear and mitochondrial dynamic localization in response to genotoxic stress, Nucleic Acids Res., 38, 3963, 10.1093/nar/gkq108
Szczesny, 2008, Long patch base excision repair in mammalian mitochondrial genomes, J. Biol. Chem., 283, 26349, 10.1074/jbc.M803491200
Tanaka, 2002, Gene therapy for mitochondrial disease by delivering restriction endonuclease SmaI into mitochondria, J. Biomed. Sci., 9, 534
Taylor, 2001, An antigenomic strategy for treating heteroplasmic mtDNA disorders, Adv. Drug Deliv. Rev., 49, 121, 10.1016/S0169-409X(01)00130-2
Vestweber, 1989, DNA–protein conjugates can enter mitochondria via the protein import pathway, Nature, 338, 170, 10.1038/338170a0
Vongsamphanh, 2001, Pir1p mediates translocation of the yeast Apn1p endonuclease into the mitochondria to maintain genomic stability, Mol. Cell. Biol., 21, 1647, 10.1128/MCB.21.5.1647-1655.2001
Weber-Lotfi, 2009, Developing a genetic approach to investigate the mechanism of mitochondrial competence for DNA import, Biochim. Biophys. Acta, 1787, 320, 10.1016/j.bbabio.2008.11.001
Weissig, 2001, DQAsome/DNA complexes release DNA upon contact with isolated mouse liver mitochondria, J. Control. Release, 75, 401, 10.1016/S0168-3659(01)00392-3
Weissig, 1998, DQAsomes: a novel potential drug and gene delivery system made from Dequalinium, Pharm. Res., 15, 334, 10.1023/A:1011991307631
Weissig, 2000, Mitochondriotropic cationic vesicles: a strategy towards mitochondrial gene therapy, Curr. Pharm. Biotechnol., 1, 325, 10.2174/1389201003378870
Xu, 2008, Manipulating the metazoan mitochondrial genome with targeted restriction enzymes, Science, 321, 575, 10.1126/science.1160226
Yagi, 2006, Can a single subunit yeast NADH dehydrogenase (Ndi1) remedy diseases caused by respiratory complex I defects?, Rejuvenation Res., 9, 191, 10.1089/rej.2006.9.191
Yagi, 2006, Possibility of transkingdom gene therapy for complex I diseases, Biochim. Biophys. Acta, 1757, 708, 10.1016/j.bbabio.2006.01.011
Yamada, 2008, MITO-Porter: a liposome-based carrier system for delivery of macromolecules into mitochondria via membrane fusion, Biochim. Biophys. Acta, 1778, 423, 10.1016/j.bbamem.2007.11.002
Yasuzaki, 2010, Mitochondrial matrix delivery using MITO-Porter, a liposome-based carrier that specifies fusion with mitochondrial membranes, Biochem. Biophys. Res. Commun., 397, 181, 10.1016/j.bbrc.2010.05.070
Yoon, 2003, Efficient cloning and engineering of entire mitochondrial genomes in Escherichia coli and transfer into transcriptionally active mitochondria, Nucleic Acids Res., 31, 1407, 10.1093/nar/gkg228
Yoon, 2005, Transformation of isolated mammalian mitochondria by bacterial conjugation, Nucleic Acids Res., 33, e139, 10.1093/nar/gni140
Yoshida, 2003, P53 physically interacts with mitochondrial transcription factor A and differentially regulates binding to damaged DNA, Cancer Res., 63, 3729
Zhang, 2007, Targeting human 8-oxoguanine DNA glycosylase (hOGG1) to mitochondria enhances cisplatin cytotoxicity in hepatoma cells, Carcinogenesis, 28, 1629, 10.1093/carcin/bgm072
Zhou, 2010, Mitochondrial DNA heteroplasmy in Candida glabrata after mitochondrial transformation, Eukaryot. Cell, 9, 806, 10.1128/EC.00349-09