Microsatellite null alleles in parentage analysis

Avise JC, Power AJ, Walker D (2004). Genetic sex determination, gender identification, and pseudohermaphroditism in the knobbed whelk, Busycon carica (Mollusca; Melongenidae). Proc R Soc Lond B 271: 641–646.

Banks MA, Blouin MS, Baldwin BA, Rashbrook VK, Fitzgerald HA, Blankenship SM et al (1999). Isolation and inheritance of novel microsatellites in Chinook Salmon (Oncorhynchus tschawytscha). J Hered 90: 281–288.

Boyd WC (1954). Tables and monograms for calculating chances of excluding paternity. Am J Hum Genet 6: 426–433.

Brookfield JFY (1996). A simple new method for estimating null allele frequency from heterozygote deficiency. Mol Ecol 5: 453–455.

Callen DF, Thompson AD, Shen Y, Phillips HA, Richards RI, Mulley JC et al (1993). Incidence and origin of ‘null’ alleles in the (AC)n microsatellite markers. Am J Hum Genet 52: 922–927.

Chakraborty R, De Andrade M, Daiger SP, Budowle B (1992). Apparent heterozygote deficiencies observed in DNA typing data and their implications in forensic applications. Ann Hum Genet 56: 45–57.

Dempster AP, Laird NM, Rubin DB (1977). Maximum likelihood from incomplete data via the EM algorithm. J R Stat Soc B 39: 1–38.

Dow BD, Ashley MV (1996). Microsatellite analysis of seed dispersal and parentage in bur oak, Quercus macrocarpa. Mol Ecol 5: 615–627.

Gagneux P, Boesch C, Woodruff DS (1997). Microsatellite scoring errors associated with noninvasive genotyping based on nuclear DNA amplified from shed hair. Mol Ecol 6: 861–868.

Garcia de Leon FJ, Canonne M, Quillet E, Bonhomme F, Chatain B (1998). The application of microsatellite markers to breeding programmes in the sea bass, Dicentrarchus labrax. Aquaculture 159: 303–316.

Jamieson A, Taylor St CS (1997). Comparisons of three probability formulae for parentage exclusion. Anim Genet 28: 397–400.

Jarne P, Lagoda PJL (1996). Microsatellites, from molecules to populations and back. Trends Ecol Evol 11: 424–429.

Jones AG, Stockwell CA, Walker D, Avise JC (1998). The molecular basis of a microsatellite null allele in the White Sands pupfish. J Hered 89: 339–342.

Kwok S, Kellog DE, McKinney N, Spasic D, Goda L, Levenson C et al (1990). Effects of primer-template mismatches on the polymerase chain reaction: human immunodeficiency virus 1 model studies. Nucleic Acids Res 18: 999–1005.

Lehmann T, Hawley WA, Collins FH (1996). An evaluation of evolutionary constraints on microsatellite loci using null alleles. Genetics 144: 1155–1163.

Marshall TC, Slate J, Kruuk LEB, Pemberton JM (1998). Statistical confidence for likelihood-based paternity inference in natural populations. Mol Ecol 7: 639–655.

McCoy EE, Jones AG, Avise JC (2001). The genetic mating system and tests for cuckoldry in a pipefish species in which males fertilize eggs and brood offspring externally. Mol Ecol 10: 1793–1800.

Paetkau D, Strobeck C (1995). The molecular basis and evolutionary history of a microsatellite null allele in bears. Mol Ecol 4: 519–520.

Primmer CR, Moller AP, Ellegren H (1995). Resolving genetic relationships with microsatellite markers: a parentage testing system for the swallow Hirundo rustica. Mol Ecol 4: 493–498.

Raymond M, Rousset F (1995). GenePop (Ver. 1.2): a population genetics software for exact test and ecumenicism. J Hered 86: 248–249.

Summers K, Amos W (1997). Behavioral, ecological, and molecular genetic analyses of reproductive strategies in the Amazonian dart-poison frog, Dendrobates ventrimaculatus. Behav Ecol 8: 260–267.

Van Treuren R (1998). Estimating null allele frequencies at a microsatellite locus in the oystercatcher (Haematopus ostralegus). Mol Ecol 7: 1413–1417.

Walker D, Porter BA, Avise JC (2002). Genetic parentage assessment in the crayfish Orconectes placidus, a high-fecundity invertebrate with extended maternal brood care. Mol Ecol 11: 2115–2122.

Wattier R, Engel CR, Saumitou-Laprade P, Valero M (1998). Short allele dominance as a source of heterozygote deficiency at microsatellite loci: experimental evidence at the dinucleotide locus Gv1CT in Gracilaria gracilis (Rhodophyta). Mol Ecol 7: 1569–1573.

Weir BS (1996). Genetic Data Analysis II., Sinauer: Sunderland, MA.

Yasuda N, Kimura M (1968). A gene-counting method of maximum likelihood for estimating gene frequencies in ABO and ABO-like systems. Ann Hum Genet 31: 409–420.