Microbiological diagnostic procedures in respiratory infections: mycobacterial infections

Esther, 2005, Non-tuberculous mycobacterial infection in young children with cystic fibrosis, Pediatr Pulmonol, 40, 39, 10.1002/ppul.20222 Schaaf, 1993, Tuberculosis in infants less than 3 months of age, Arch Dis Child, 69, 371, 10.1136/adc.69.3.371 Harris, 1977, Cavitary tuberculosis in children (letter), J Pediatr, 90, 660, 10.1016/S0022-3476(77)80399-5 van Hest, 2004, Cavitating tuberculosis in an infant, Pediatr Infect Dis J, 23, 667, 10.1097/01.inf.0000130955.39415.b6 Vallejo, 1994, Clinical features, diagnosis, and treatment of tuberculosis in infants, Pediatrics, 84, 1, 10.1542/peds.94.1.1 Snider, 1988, Tuberculosis in children. Pediatr Infect Dis J, 7, 271, 10.1097/00006454-198804000-00008 Starke, 2002, Childhood tuberculosis: ending the neglect (editorial), Int J Tuberc Lung Dis, 6, 373 Schaaf, 1995, Respiratory tuberculosis in childhood: the diagnostic value of clinical features and special investigations, Pediatr Infect Dis J, 14, 189, 10.1097/00006454-199503000-00004 de Pontual, 2006, Tuberculosis in adolescents. A French retrospective study of 52 cases, Pediatr Infect Dis J, 25, 930, 10.1097/01.inf.0000237919.53123.f4 American Thoracic Society, 2000, Diagnostic standards and classification of tuberculosis in adults and children, Am J Resp Crit Care Med, 161, 1376, 10.1164/ajrccm.161.4.16141 Pomptius, 1997, Standardisation of gastric aspirate technique improves yield in the diagnosis of tuberculosis in children, Pediatr Infect Dis J, 16, 222, 10.1097/00006454-199702000-00011 Zar, 2000, Sputum induction for the diagnosis of pulmonary tuberculosis in infants and young children in an urban setting in South Africa, Arch Dis Child, 82, 305, 10.1136/adc.82.4.305 Zar, 2005, Induced sputum versus gastric lavage for microbiological confirmation of pulmonary tuberculosis in infants and young children: a prospective study, Lancet, 365, 130, 10.1016/S0140-6736(05)17702-2 Abadco, 1992, Gastric lavage is better than bronchoalveolar lavage for isolation of Mycobacterium tuberculosis in childhood pulmonary tuberculosis, Pediatr Infect Dis J, 11, 735, 10.1097/00006454-199209000-00013 Chan, 1994, Role of flexible fiberoptic bronchoscopy in the diagnosis of childhood endobronchial tuberculosis, Pediatr Infect Dis J, 13, 506, 10.1097/00006454-199406000-00008 Somu, 1995, Value of bronchoalveolar lavage and gastric lavage in the diagnosis of pulmonary tuberculosis in children, Tuber Lung Dis, 76, 295, 10.1016/S0962-8479(05)80027-9 Singh, 2000, Role of gastric lavage and broncho-alveolar lavage in the bacteriological diagnosis of childhood pulmonary tuberculosis, Indian Pediatr, 37, 947 de Charnace, 2001, Diagnostic techniques in paediatric tuberculosis, Paediatr Respir Rev, 2, 120, 10.1053/prrv.2000.0119 Nagesh, 2001, Evaluation of polymerase chain reaction for detection of Mycobacterium tuberculosis in pleural fluid, Chest, 119, 1737, 10.1378/chest.119.6.1737 Merino, 1999, Tuberculous pleural effusion in children, Chest, 115, 26, 10.1378/chest.115.1.26 Peterson, 1999, Comparison of direct and concentrated acid-fast smears to identify specimens culture-positive for Mycobacterium spp, J Clin Microbiol, 37, 3564, 10.1128/JCM.37.11.3564-3568.1999 Laserson, 2005, Improved sensitivity of sputum smear microscopy after processing specimens with C18-Carboxypropylbetaine to detect acid-fast bacilli: a study of United-States-bound immigrants from Vietnam, J Clin Microbiol, 43, 3460, 10.1128/JCM.43.7.3460-3462.2005 Padilla, 2005, Comparison of the sodium hydroxide processing method with the C18-Carboxypropylbetaine specimen processing method using independent specimens with auramine smear, the MB.BacT liquid culture system, and the COBAS AMPLICOR MTB test, J Clin Microbiol, 43, 6091, 10.1128/JCM.43.12.6091-6097.2005 Shingadia, 2003, Diagnosis and treatment of tuberculosis in children, Lancet Infect Dis, 3, 624, 10.1016/S1473-3099(03)00771-0 Chakravorty, 2005, Utility of universal sample processing methodology, combining smear microscopy, culture and PCR, for diagnosis of pulmonary tuberculosis, J Clin Microbiol, 43, 2703, 10.1128/JCM.43.6.2703-2708.2005 Starke, 1993, Childhood tuberculosis. A diagnostic dilemma (Editorial), Chest, 104, 329, 10.1378/chest.104.2.329 Starke, 1989, Tuberculosis in the pediatric population of Houston, Texas, Pediatrics, 84, 28, 10.1542/peds.84.1.28 Merino, 2001, Microbiology of pediatric pulmonary tuberculosis, Chest, 119, 1434, 10.1378/chest.119.5.1434 Weitsman, 2004, Acid-fast stains, vol 2 Steingart, 2006, Fluorescence versus conventional sputum smear microscopy for tuberculosis: a systematic review, Lancet Infect Dis, 6, 570, 10.1016/S1473-3099(06)70578-3 Hanscheid, 2007, Fluorescence microscopy for tuberculosis diagnosis (Letter), Lancet Infect Dis, 7, 236, 10.1016/S1473-3099(07)70058-0 Starke, 2000, Diagnosis of tuberculosis in children, Pediatr Inf Dis J, 19, 1095, 10.1097/00006454-200011000-00015 Smith, 1996, Detection of Mycobacterium tuberculosis in clinical specimens from children using a polymerase chain reaction, Pediatrics, 97, 155, 10.1542/peds.97.2.155 Braun, 1993, Pediatric tuberculosis, bacille Calmette-Guerin immunization, and the acquired immunodeficiency syndrome, Semin Infect Dis, 4, 261 McDonald, 1999, Unrecognised Mycobacterium tuberculosis bacteraemia among hospital inpatients in less developed countries, Lancet, 354, 1159, 10.1016/S0140-6736(98)12325-5 Moore, 2006, Microscopic-observation drug-susceptibility assay for the diagnosis of TB, N Engl J Med, 355, 1539, 10.1056/NEJMoa055524 Arias, 2007, Clinical evaluation of the microscopic-observation drug-susceptibility assay for detection of tuberculosis, Clin Infect Dis, 44, 674, 10.1086/511639 Oberhelman, 2006, Improved recovery of Mycobacterium tuberculosis from children using the microscopic observation drug susceptibility method (Abstract), Pediatrics, 118, 373, 10.1542/peds.2005-2623 Shiferaw, 2007, Evaluation of microscopic observation drug susceptibility assay for detection of multidrug-resistant Mycobacterium tuberculosis, J Clin Microbiol, 45, 1093, 10.1128/JCM.01949-06 Morgan, 2005, A commercial line probe assay for the rapid detection of rifampicin resistance in Mycobacterium tuberculosis: a systematic review and meta-analysis, BMC Infect Dis, 5, 62, 10.1186/1471-2334-5-62 Saramiento, 2003, Assessment by meta-analysis of PCR for diagnosis of smear-negative pulmonary tuberculosis, J Clin Microbiol, 41, 3233, 10.1128/JCM.41.7.3233-3240.2003 Rutjes AWS, Reitsma JB, Coomarasamy A, et al. Methodological research in diagnostic tests: evaluation of diagnostic tests when there is no gold standard – A review of methods. Research Methodology Programme. 2006 Final Report RM04/JH21. Available at www.pcpoh.bham.ac.uk/publichealth/nccrm/PDFs%20and%20documents/Publications/JH21KK_final_report_July2006.pdf. Accessed 30th April 2007. Flores, 2005, In-house nucleic acid amplification tests for the detection of Mycobacterium tuberculosis in sputum specimens.: meta-analysis and meta-regression, BMC Microbiol, 5, 55, 10.1186/1471-2180-5-55 Delacourt, 1995, Use of polymerase chain reaction for improved diagnosis of tuberculosis in children, J Pediatr, 126, 703, 10.1016/S0022-3476(95)70396-9 Pierre, 1993, Diagnosis of primary tuberculosis in children by amplification and detection of mycobacterial DNA, Am Rev Resp Dis, 147, 420, 10.1164/ajrccm/147.2.420 Fauville-Dufaux, 1996, Contribution of the polymerase chain reaction to the diagnosis of tuberculous infections in children, Eur J Pediatr, 155, 106, 10.1007/BF02075761 Gomez-Pastrana, 1999, Diagnosis of tuberculosis using a polymerase chain reaction, Pediatr Pulmonol, 28, 344, 10.1002/(SICI)1099-0496(199911)28:5<344::AID-PPUL6>3.0.CO;2-D Gomez-Pastrana, 2001, Comparison of Amplicor, in-house polymerase chain reaction, and conventional culture for the diagnosis of tuberculosis in children, Clin Infect Dis, 32, 17, 10.1086/317526 Neu, 1999, Diagnosis of pediatric tuberculosis in the modern era, Pediatr Infect Dis J, 18, 122, 10.1097/00006454-199902000-00008 Pai, 2004, Nucleic acid amplification tests in the diagnosis of tuberculous pleuritis: a systematic review and meta-analysis, BMC Infect Dis, 4, 6, 10.1186/1471-2334-4-6 Mishra, 2006, Evaluation of polymerase chain reaction and adenosine deaminase assay for the diagnosis of tuberculous effusions in children, Arch Dis Child, 91, 985, 10.1136/adc.2005.079160 Wang, 2002, A meta-analysis of the effect of Bacille Calmette Guerin vaccination on tuberculin skin test measurements, Thorax, 57, 804, 10.1136/thorax.57.9.804 Steiner, 1980, Persistently negative tuberculin reactions: their presence among children with culture positive for Mycobacterium tuberculosis (culture-negative tuberculosis), Am J Dis Child, 134, 747, 10.1001/archpedi.1980.02130200017007 Rose, 1995, Interpretation of the tuberculin skin test, J Gen Intern Med, 10, 635, 10.1007/BF02602749 Lifschitz, 1965, The value of the tuberculin skin test as a screening test for tuberculosis among BCG-vaccinated children, Pediatrics, 36, 624, 10.1542/peds.36.4.624 Pottumarthy, 2000, A comparison of seven tests for the serological diagnosis of tuberculosis, J Clin Microbiol, 38, 2227, 10.1128/JCM.38.6.2227-2231.2000 Delacourt, 1993, Value of ELISA using antigen 60 for the diagnosis of tuberculosis in children, Chest, 104, 393, 10.1378/chest.104.2.393 Turneer, 1994, Determination of humoral immunoglobulins M and G directed against mycobacterial antigen 60 failed to diagnose primary tuberculosis and mycobacterial adenitis in children, Am J Respir Crit Care Med, 150, 1508, 10.1164/ajrccm.150.6.7952608 Gupta, 1997, Serological diagnosis of childhood tuberculosis by estimation of mycobacterial antigen 60-specific immunoglobulins in the serum, Tuber Lung Dis, 78, 21, 10.1016/S0962-8479(97)90012-5 Swaminathan, 1999, Sero diagnosis of tuberculosis in children using two ELISA kits, Indian J Pediatr, 66, 837, 10.1007/BF02723848 Bhatia, 2005, Serodiagnosis of childhood tuberculosis by ELISA, Indian J Pediatr, 72, 383, 10.1007/BF02731731 Harinath, 2006, A cocktail of affinity-purified antibodies reactive with diagnostically useful mycobacterial antigens ES-31, ES-43, and EST-6 for detecting the presence of Mycobacterium tuberculosis, Diagn Microbiol Infect Dis, 55, 65, 10.1016/j.diagmicrobio.2005.10.021 Centers for Disease Control and Prevention. Guidelines for using the QuantiFERON-TB Gold test for detecting Mycobacterium tuberculosis infection, United States. MMWR 2005; 54: 49–55. Pai, 2004, Interferon-gamma assays in the immunodiagnosis of tuberculosis: a systematic review, Lancet Infect Dis, 4, 761, 10.1016/S1473-3099(04)01206-X Ferrara, 2006, Use in routine clinical practice of two commercial blood tests for diagnosis of infection with Mycobacterium tuberculosis: a prospective study, Lancet, 367, 1328, 10.1016/S0140-6736(06)68579-6 Nicol, 2005, Enzyme-linked immunospot assay responses to early secretory antigenic target 6, culture filtrate protein 10, and purified protein derivative among children with tuberculosis: implications for diagnosis and monitoring of therapy, Clin Infect Dis, 40, 1301, 10.1086/429245 Ewer, 2003, Comparison of T-cell based assay with tuberculin skin test for diagnosis of Mycobacterium tuberculosis infection in a school tuberculosis outbreak, Lancet, 361, 1168, 10.1016/S0140-6736(03)12950-9 Hill, 2006, Comparison of enzyme-linked immunospot assay and tuberculin skin test in healthy children exposed to Mycobacterium tuberculosis, Pediatrics, 117, 1542, 10.1542/peds.2005-2095 Liebeschuetz, 2004, Diagnosis of tuberculosis in South African children with a T-cell-based assay: a prospective cohort study, Lancet, 364, 2196, 10.1016/S0140-6736(04)17592-2 Connell, 2006, Performance of a whole blood interferon gamma assay for detecting latent infection with Mycobacterium tuberculosis in children, Thorax, 61, 616, 10.1136/thx.2005.048033 Menzies, 2007, Meta-analysis: New tests for the diagnosis of latent tuberculosis infection: Areas of uncertainty and recommendations for research, Ann Intern Med, 146, 340, 10.7326/0003-4819-146-5-200703060-00006 Dinnes, 2007, A systematic review of rapid diagnostic tests for the detection of tuberculosis infection, Health Technol Assess, 11, 1, 10.3310/hta11030 Mishra, 2000, Lysozyme levels for the diagnosis of tuberculous effusions in children, J Trop Pediatr, 46, 296, 10.1093/tropej/46.5.296 Hesseling, 2002, A critical review of diagnostic approaches used in the diagnosis of childhood tuberculosis, Int J Tuberc Lung Dis, 6, 1038 Houwert, 1988, Prospective evaluation of World Health Organization criteria to assist diagnosis of tuberculosis in children, Eur Respir J, 11, 1116, 10.1183/09031936.98.11051116 Berggren Palme, 2004, Detection of Mycobacterium tuberculosis on gastric aspirates collected from Ethiopian HIV-positive and HIV-negative children in a mixed in- and outpatient setting, Acta Paediatr, 93, 311, 10.1111/j.1651-2227.2004.tb02953.x Tevere, 1996, Detection of Mycobacterium tuberculosis by PCR amplification with pan-Mycobacterium primers and hybridization to an M. tuberculosis-specific probe, J Clin Microbiol, 34, 1918, 10.1128/JCM.34.4.918-923.1996 Griffith, 2007, An official ATS/IDSA statement: Diagnosis, treatment and prevention of non-tuberculous mycobacterial diseases, Am J Resp Crit Care Med, 175, 367, 10.1164/rccm.200604-571ST