Đa dạng vi sinh vật trong các loại bùn giấy khác nhau: xác định hoạt tính enzyme với tiềm năng ứng dụng công nghiệp

Abhay R, Chandra R, Mohan M, Krishna R, Hemant JP, Atya K (2007) Biodegradation of kraft lignin by a newly isolated bacterial strain Aneurinibacillus aneurinilyticus from the sludge of a pulp paper mill. World J Microbiol Biotechnol 23:793–799. doi:10.1007/s11274-006-9299-x Adrio JL, Demain AL (2005) Microbial cells and enzymes. A century of progress. Methods Biotechnol Microb Enzyme Biotransform 17:1–27 Ai T, Jiang Z, Qiu Y, Dong X, Cui S (2003) New technology advance in soda recovery of pulp black liquors. Hubei Papermak 4:36–39 Apparao U, Krishnaswamy VG (2015) Production of polyhydroxyalkanoate (PHA) by a moderately halotolerant bacterium Klebsiella pneumonia isolated from rubber plantation area. Int J Environ Bioremed Biodegrad 3:54–61. doi:10.12691/ijebb-3-2-3 Arora DS, Sandhu DK (1985) Laccase production and wood degradation by a white-rot fungus Daedalea flavida. Enzyme Microb Technol 7:405–408 Bandounas L, Wierckx NJP, Johannes H, Harald JR (2011) Isolation and characterization of novel bacterial strains exhibiting ligninolytic potential. BMC Biotechnol 11:1472–6750. doi:10.1186/1472-6750-11-94 Barr DP, Steven D (1994) Mechanisms white rot fungi use to degrade pollutants. Aust Environ Sci Technol 28:78A–87A. doi:10.1021/es00051a002 Beauchamp CJ, Beaunoir AMS, Beaulieu C, Chalifour FP (2006) Confirmation of E. coli among other thermotolerant coliform bacteria in paper mill effluents, wood chips screening rejects and paper sludges. Water Res 40:2452–2462 Bengtsson S, Werker A, Christensson M, Welander T (2006) Production of polyhydroxyalkanoates by activated sludge treating a paper mill wastewater. Bioresour Technol 99:509–516 Blanca EB, Carlos C, Marquez MC (2007) Biodegradation of azo dyes by bacteria inoculated on solid media. Dyes Pigments 75:73–81 Brahimi Horn MC, Lim KK, Liany SL, Mou DG (1992) Binding of textile azo dyes by Mirothecium verrucaria-Orange II, 10B (blue) and RS (red) azo dye uptake for textile wastewater decolorization. J Ind Microbiol 10:31–36 Braunegg G, Bona R, Koller M (2004) Sustainable polymer production. Polym Plast Technol 1:1779–1793 CANMET Energy Technology Centre (2005) Pulp and paper sludge to energy preliminary assessment of technologies, Canada Chandra R, Abhishek A, Sankhwar M (2011) Bacterial decolorization and detoxification of black liquor from rayon grade pulp manufacturing paper industry and detection of their metabolic products. Biores Technol 102:6429–6436 Charbonneau DM, Meddeb-Mouelhi F, Boissinot M, Sirois M, Beauregard M (2011) Identification of thermophilic bacterial strains producing thermotolerant hydrolytic enzymes from manure compost. Indian J Microbiol 52:41–47. doi:10.1007/s12088-011-0156-8 Chen GQ (2009) A microbial polyhydroxyalkanoates (PHA) based bio- and materials industry. Chem Soc Rev 38:2434–2446 Chiellini C, Iannelli R, Lena R, Gullo M, Petroni G (2014) Bacteria characterization in paper mill white water. Bioressources 9:2541–2559 Crecchio C, Ruggiero P, Pizzigallo MDR (1995) Polyphenoloxidases immobilized in organic gels, properties and applications in the detoxification of aromatic compounds. Biotechnol Bioeng 48:585–591 D’Souza T, Sharma D, Raghukumar C (2009) A thermostable metal-tolerant laccase with bioremediation potential from a marine-derived fungus. Mar Biotechnol 11:725–737 Daizong C, Guofang L, Min Z, Song H (2014) Decolourization of azo dyes by a newly isolated Klebsiella sp. strain Y3, and effects of various factors on biodegradation. Biotechnol Biotechnol Equip 28:478–486. doi:10.1080/13102818.2014.926053 Demain AL, Adrio JL (2008) Contributions of microorganisms to industrial biology. Mol Biotechnol 38:41–55 Desjardins E, Beaulieu C (2003) Identification of bacteria contaminating pulp and a paper machine in a Canadian paper mill. J Ind Microb Biotechnol 30:141–145 Eriksson KE, Kirk TK (1994) Biopulping: an overview of developments in an environmentally safe paper making technology. FEMS Microbiol Rev 13:351–364. doi:10.1111/j.1574-6976.1994.tb00054.x Fariha H, Aamer AS, Sundus J, Abdul H (2010) Enzymes used in detergents: lipases. Afr J Biotechnol 9:4836–4844 Fisher AK, Freedman BG, Bevan DR, Sengera RS (2014) A review of metabolic and enzymatic engineering strategies for designing and optimizing performance of microbial cell factorie. Comput Struct Biotechnol J 11:91–99. doi:10.1016/j.csbj.2014.08.010 Gomaa EZ (2014) Production of polyhydroxyalkanoates (PHAs) by Bacillus subtilis and Escherichia coli grown on cane molasses fortified with ethanol. Braz Arch Biol Technol 57:145–154 Gupta R, Gupta N, Rathi P (2004) Bacterial lipases: an overview of production, purification and biochemical properties. Appl Microbiol Biotechnol 64:763–781 Hardiman E, Gibbs M, Reeves R, Bergquist P (2010) Directed evolution of a thermophilic β-glucosidase for cellulosic bioethanol production. Appl Biochem Biotechnol 161:301–312. doi:10.1007/s12010-009-8794-6 Harju-Jeanty P, Vaatanen P (1984) Detrimental microorganism in the paper and cardboard mills. Pap Puu 3:245–259 Hofrichter M (2002) Review: lignin conversion by manganese peroxidase (MnP). Enzyme Microb Technol 30:454–466 Houde A, Kademi A, Leblanc D (2004) Lipases and their industrial applications: an overview. Appl Biochem Biotechnol 118:155–170 Huang G, Jeffrey XS, Langrish TAG (2007) A new pulping process for wheat straw to reduce problems with the discharge of black liquor. Bioresour Technol 98:2829–2835 Integrated Pollution Prevention and Control (IPPC) (2001) Reference document on best available techniques in the pulp and paper industry. European Commission. http://eippcb.jrc.ec.europa.eu/reference/BREF/ppm_bref_1201.pdf Jaeger KE, Reetz TM (1998) Microbial lipases form versatile tools for biotechnology. Trends Biotechnol 16:396–403 Kämpfer P, Falsen E, Lodders N, Martin K, Kassmannhuber J, Busse HJ (2012) Paenibacillus chartarius sp. nov., isolated from a paper mill. Int J Syst Evolut Microbiol 62:1342–1347. doi:10.1099/ijs.0.035154-0 Karn SK, Chakrabarty SK, Reddy MS (2010) Pentachlorophenol degradation by Pseudomonas stutzeri CL7 in the secondary sludge of pulp and paper mill. J Environ Sci 22:1608–1612 Karn SK, Kumar P, Pan X (2013) Extraction of lipase and protease and characterization of activated sludge from pulp and paper industry. Prep Biochem Biotechnol 43:152–162. doi:10.1080/10826068.2012.712589 Kiiskinen LL, Ratto M, Kruus K (2004) Screening for novel laccase-producing microbes. J Appl Microbiol 97:640–646. doi:10.1111/j.1365-2672.2004.02348.x43 Kirk O, Borchert TV, Fuglsang CC (2002) Industrial enzyme applications. Curr Opin Biotechnol 13:345–351 Kitamura S, Doi Y (1994) Staining method of poly (3-hydroxyalkanoic acids) producing bacteria by Nile blue. Biotechnol Tech 8:345–350 Kubicek CP, Mach RL, Peterbauer CK, Lorito M (2001) Trichoderma: from genes to biocontrol. J Plant Pathol 83:11–23 Kubicek CP, Mikus M, Schuster A, Schmoll M, Seiboth B (2009) Metabolic engineering strategies for the improvement of cellulase production by Hypocrea jecorina. Biotechnol Biofuels 2:1754–6834 Kuhad RC, Singh A, Eriksson KEL (1997) Microorganisms and enzymes involved in the degradation of plant fiber cell walls. Adv Biochem Eng Biotechnol 57:47–125 Kumar A, Harrison PM, Cheung KH, Lan N, Echols N, Bertone P et al (2002) An integrated approach for finding overlooked genes in yeast. Nat Biotechnol 20:58–63 Kumar R, Singh S, Singh OV (2008) Bioconversion of lignocellulosic biomass: Biochemical and molecular perspectives. J Ind Microbiol Biotechnol 35:377–391 Liu L, Yang H, Shin HD, Chen RR, Li J, Du G, Chen J (2013) How to achieve high-level expression of microbial enzymes: strategies and perspectives. Bioengineered. doi:10.4161/bioe.24761 Maki ML, Broere M, Leung KT, Qin W (2011) Characterization of some efficient cellulase producing bacteria isolated from paper mill sludges and organic fertilizers. Int J Biochem Mol Biol 2:146–154 Martin CM (1988) Identification and implications of troublesome slime-forming bacteria found in paper mills. TAPPI paper-makers conference. TAPPI Press, Atlanta, pp 91–95 Martínez MJ, Gutiérrez A, del Río JC (2005) Biodegradation of lignocellulosics: microbial, chemical, and enzymatic aspects of the fungal attack of lignin. Int Microbiol 8:195–204 Mathews SL, Ayoub AS, Pawlak J, Grunden AM (2013) Methods for facilitating microbial growth on pulp mill waste streams and characterization of the biodegradation potential of cultured microbes. J Vis Exp 82:51373. doi:10.3791/51373 Meddeb-Mouelhi F, Moisan JK, Beauregard M (2015) Characterization of bacteria community isolated from wood decay. Br Biotechnol J 10:2231–2927 Naheed N, Jamil N (2014) Optimization of biodegradable plastic production on sugar cane molasses in Enterobacter sp. SEL2. Braz J Microbiol 45:417–426 Nathalie B, Bopha Y, Lefebvre R (2015) From organic pollutants to bioplastics: insights into the bioremediation of aromatic compounds by Cupriavidus necator. New Biotechnol 32:1871–6784. doi:10.1016/j.nbt.2014.09.003 Negrão DR, Sain M, Alcides LL, Sameni J, Jeng R, Jesus JPF, Regina T, Monteiro R (2015) Fragmentation of lignin from Organosolv Black liquor by White rot fungi, bioresources. BioResources 10:1553–1573 Niemelä SI, Väätänen P (1982) Survival in lake water of Klebsiella pneumoniae discharged by a paper mill. Appl Environ Microbiol 44:264–269 Nigam PS (2013) Microbial enzymes with special characteristics for biotechnological applications. Biomolecules 3:597–611. doi:10.3390/biom3030597 Nigam PS, Pandey A (2009a) Biotechnology for agro-industrial residues utilisation: utilisation of agro-residues. Springer, Heidelberg. ISBN 978-1-4020-9941-0 Nigam PS, Pandey A (2009) Biotechnology for agro-industrial residues utilisation: utilisation of agro-residues. Springer, Heidelberg. ISBN 978-1-4020-9941-0. http://public.eblib.com/EBLPublic/PublicView.do?ptiID=450886 Nigam P, Singh D (1995) Enzyme and microbial systems involved in starch processing. Enzyme Microb Technol 17:770–778. doi:10.1016/0141-0229(94)00003-A Nigam VK, Singhal P, Vidyarthi AS, Mohan MK, Ghosh P (2013) Studies on keratinolytic activity of alkaline proteases from halophilic bacteria. Int J Pharm Biol Sci 4:389–399 Oliveira PL, Teixeira Duarte MC, Ponezi AN, Durrant RL (2009) Purification and Partial characterization of manganese peroxidase from Bacillus pumilus and Paenibacillus sp. Braz J Microbiol 40:818–826 Orth AB, Royse DJ, Tien M (1993) Ubiquity of lignin degrading peroxidases among various wood degrading fungi. Appl Environ Microbiol 59:4017–4023 Oyadomari M, Shinohara H, Johjima T, Wariishi H, Tanaka H (2003) Electrochemical characterization of lignin peroxidase from the white-rot basidiomycete Phanerochaete chrysosporium. J Mol Catal B Enzyme 21:291–297 Pandey A, Benjamin S, Soccol CR, Nigam P, Krieger N, Soccol VT (1999) The realm of microbial lipases in biotechnology. Biotechnol Appl Biochem 2:119–131 Patil KJ, Chopda MZ, Mahajan RT (2011) Lipase biodiversity. Indian J Sci Technol 4:971–982 Paye JMD, Lynd L, Guseva A, Hammer SK, Gjersing E, Davis MF, Davison BH, Olstad J, Donohoe BS, Nguyen TY, Wyman CE, Pattathil S, Hahn MG (2015) Biological lignocellulose solubilisation: comparative evaluation of biocatalysts and enhancement via cotreatment. Biotechnol Biofuels. doi:10.1186/s13068-015-0412-y Pervaiz M, Sai M (2012) Protein extraction from secondary sludge of paper mill wastewater and its utilization as a wood adhesive. BioResources 6:961–970 Priest FG (1977) Extracellular enzyme synthesis in the genus Bacillus. Bacteriol Rev 41:711–753 Raj A, Kumar S, Kumar Singh S, Kumar M (2013) Characterization of a new Providencia sp. strain X1 producing multiple xylanases on wheat bran. Sci World J. doi:10.1155/2013/386769 Rehman S, Jamil N, Hasnain S (2007) Screening of different contaminated environments for polyhydroxyalkanoates producing bacterial strain. Biologia 62:650–656 Rieger PG, Meier HM, Gerle M, Vogt U, Groth T, Knackmuss HJ (2002) Xenobiotics in the environment: present and future strategies to obviate the problem of biological persistence. J Biotechnol 94:101–123 Sahoo DK, Gupta R (2005) Evaluation of ligninolytic microorganisms for efficient decolorization of a small pulp and paper mill effluent. Process Biochem 40:1573–1578 Satoh H, Mino T, Matsuo T (1999) PHA production by activated sludge. Int J Biol Macromol 25:105–109 Schallmey M, Singh A, Ward OP (2004) Developments in the use of Bacillus species for industrial production. Rev Can Microbiol 50:1–17 Sharyo MHHMYH (1993) The recent progress and general status of the lipase pitch control technology in Japan. Jpn Tappi J 47:41–51 Singh NP, Prabhu KA (1986) Cellulase and ligninase production by basidiomycete culture in solid-state fermentation. Microbial enzymes with special characteristics for biotechnological applications. Biomolecules 2013:3597–3611 Singh M, Patel SKS, Kalia VC (2009) Bacillus subtilis as potential producer for polyhydroxyalkanoates. Microb Cell Facties 8:38. doi:10.1186/1475-2859-8-38 Vaisanen OM, Mwaisumo NJ, Salkinoja-Salonen MS (1991) Differentiation of dairy strains of the Bacillus cereus group by phage typing, minimum growth temperature, and fatty acid analysis. J Appl Microbiol 70:315–324 Van Dyke Y (2004) Practical applications of protease enzymes in paper. The Book and Paper Group Annual 23:93 http://cool.conservation-us.org/coolaic/sg/bpg/annual/v23/bp23-16.pdf. Accessed 20th April 2016 Verlinden RAJ, Hill DJ, Kenward MA, Williams CD, Khanna IR, Radecka I (2007) Bacterial synthesis of biodegradable polyhydroxyalkanoates. J Appl Microbiol 102(6):1364–5072. doi:10.1111/j.1365-2672.2007.03335.x Wang WL, Kang L, Lee YY (2010) Production of cellulase from kraft paper mill sludge by Trichoderma reesei rut C-30. Biochem Biotechnol 161:382–394. doi:10.1007/s12010-009-8863-x Wesenberg D, Kyriakides I, Agathos SN (2003) White-rot fungi and their enzymes for the treatment of industrial dye effluents. Biotechnol Adv 22:161–187 Wongwilaiwalin S, Rattanachomsri U, Laothanachareon T, Eurwilaichitr L, Igarashi Y, Champreda V (2010) Analysis of a thermophilic lignocellulose degrading microbial consortium and multi-species lignocellulolytic enzyme system. Enzyme Microb Technol 47:283–290 Woo HL, Utturkar S, Klingeman D, Simmons BA, DeAngelis KM, Brown SD, Hazen TC (2014) Draft genome sequence of the lignin-degrading Burkholderia sp. strain LIG30, isolated from wet tropical forest soil. Genome Announc 2:637. doi:10.1128/genomeA.00637-14 Global Markets for Enzymes in Industrial Applications. http://www.reportlinker.com/p0870778/Global-Markets-for-Enzymes-in-Industrial-Applications.html Zhou S, Ingram LO (2000) Synergistic hydrolysis of carboxymethyl cellulose and acid-swollen cellulose by two endoglucanases (CelZ and CelY) from Erwinia chrysanthemi. J Bacteriol 182:5676–5682