Microbial community structure analysis of euxinic sediments using phospholipid fatty acid biomarkers

American Public Health Association (1989):Standard methods for the examination of water and wastewater. 17th ed., American Public Health Association, Washington, D. C.

Baird, B. H. and D. C. White (1985): Biomass and community structure of the abyssal microbiota determined from the ester-linked phospholipids recovered from Venezuela Basin and Puerto Rico Trench sediments.Mar. Geol.,68, 217–231.

Baird, B. H., D. E. Nivens, J. H. Parker and D. C. White (1985): The biomass, and community structure and spatial distribution of the sedimentary microbiota from high energy area of the deep sea.Deep-Sea Res.,32, 1089–1099.

Blackburn, T. H. (1991): Accumulation and regeneration: processes at the benthic boundary layer. p. 181–195. InOcean Margin Processes in Global Change, ed. by R. F. C. Mantoura, J. M. Martin and R. Wollast, John Wiley & Sons Ltd., Chichester, England.

Bobbie, R. J. and D. C. White (1980): Characterization of benthic microbial community structure by high resolution gas chromatography of fatty acid methyl esters.Appl. Environ. Microbiol.,39, 1212–1222.

Boon, J. J., J. W. De Leeuw, G. J. van der Hoek and J. H. Vosjan (1977): Significance and taxonomic value of iso and anteiso monoenoic fatty acids and branched β-hydroxy acids inDesulfovibrio desulfuricans.J. Bacteriol.,129, 1183–1191.

Bousefield, I. J., G. L. Smith, T. R. Dando and G. Hobbs (1983): Numerical analysis of total fatty acid profiles in the identification of corneyform, nocardioform and some other bacteria.J. Gen. Microbiol.,129, 375–394.

Dale, N. G. (1974): Bacteria in intertidal sediments: Factors related to their distribution.Liminol. Oceanogr.,19, 509–518.

Dowling, N. J. E., F. Widdel and D. C. White (1986): Phospholipid ester-linked fatty acid biomarkers of acetate oxidizing sulfate reducers and other sulfide forming bacteria.J. Gen. Microbiol.,132, 1815–1825.

Findlay, R. H., M. B. Trexler, J. B. Guckert and D. C. White (1990): Laboratory study of disturbance in marine sediments: response of a microbial community.Mar. Ecol. Prog. Ser.,62, 121–133.

Gillan, F. T. and R. W. Hogg (1984): A method for the estimation of bacterial biomass and community structure in mangrove sediments.J. Microbiol. Methods,2, 275–293.

Guckert, J. B., C. P. Antworth, P. D. Nichols and D. C. White (1985): Phospholipid ester-linked fatty acid profile as reproducible assays for changes in procaryotic community structure of estuarine sediments.FEMS Microbiol. Ecol.,31, 147–158.

Guckert, J. B., M. A. Hood and D. C. White (1986): Phospholipid ester-linked fatty acid profile changes during nutrient deprivation ofVibrio cholerae: Increase in thetrans/cis ratio and proportions of cycloprophyl fatty acids.Appl. Environ. Microbiol.,52, 794–801.

Guckert, J. B., D. B. Ringelberg and D. C. White (1987): Biosynthesis oftrans fatty acids from acetate in the bacteriumPseudomonas atlantica.Canadian J. Microbiol.,33, 748–754.

Hisano, T. and T. Hayase (1991): Countermeasures against water pollution in enclosed coastal seas in Japan.Mar. Pollut. Bull.,22, 479–484.

Imamura, N. (1991): Sulfide production in relation to the oxidation-reduction potential of sediments in eutrophic coastal regions. M.S. Thesis, Hiroshima University, Hiroshima, Japan, 90 pp. (in Japanese).

JFRCA (1980):Manual for Water Pollution Analyses, ed. by Japan Fisheries Resource Conservation Association, p. 242–257, Koseisha Koseikaku, Tokyo (in Japanese).

Kaneda, T. (1977): Fatty acids of the genusBacillus: an example of branched chain preference.Bacteriol. Rev.,41, 391–418.

Lechevalier, M. P. (1977): Lipids in bacterial taxonomy — a taxonomist's view.CRC Crit. Rev. Microbiol.,5, 109–210.

Maeda, H. and A. Kawai (1988a): Microflora and bacterial organic acid production in the bottom sediment of Lake Biwa.Nippon Suisan Gakkaishi,54, 1375–1383.

Maeda, H. and A. Kawai (1988b): Hydrogen sulfide production in bottom sediments in the Northern and Southern Lake Biwa.Nippon Suisan Gakkaishi,54, 1623–1633.

Mancuso, C. A., P. D. Franzmann, H. R. Burton and P. D. Nichols (1990): Microbial community structure and biomass estimates of a methanogenic Antarctic Lake ecosystem as determined by phospholipid analyses.Microb. Ecol.,19, 73–95.

Matsuda, O., Y. Kishimoto and S. Hamasaki (1990): Factors affecting seasonal variation of oceanographic conditions at Kure port.J. Fac. Appl. Biol. Sci., Hiroshima Univ.,29, 135–144 (in Japanese with English abstract).

Nichols, P. D., J. B. Guckert and D. C. White (1986): Determination of monounsaturated fatty acid double-bond position and geometry for microbial monocultures and complex consortia by capillary GC-MS of their dimethyl disulphide adducts.J. Microbiol. Methods,5, 49–55.

Okada, T. (1991): Study on the seasonal variations of sediment characteristics and sulphate reducing bacteria in eutrophic coastal bays. M.S. Thesis, Hiroshima University, Hiroshima, Japan (in Japanese).

Parkes, R. J. and J. Taylor (1983): The relationship between fatty acid distributions and bacterial activity types in contemporary marine sediments.Estuarine, Coastal and Shelf Sci.,16, 173–189.

Perry, G. J., J. K. Volkman and R. B. Johns (1979): Fatty acids of bacterial origin in contemporary marine sediments.Geochim. Cosmochim. Acta,43, 1715–1725.

Rajendran, N., K. Venkateswaran, R. Rajendran, H. Hashimoto, Y. Urushigawa and O. Matsuda (1990): Cellular fatty acid composition inVibrio cholerae.Microb. Lett.,43, 141–147.

Rajendran, N., O. Matsuda and Y. Urushigawa (1992a): Distribution of polarlipid fatty acid biomarkers for bacteria in sediments of a polluted bay.Microbios,72, 143–152.

Rajendran, N., Y. Suwa and Y. Urushigawa (1992b): Microbial community structure in sediments of a polluted bay as determined by phospholipid ester-linked fatty acids.Mar. Pollut. Bull.,24, 305–309.

Rajendran, N., O. Matsuda, N. Imamura and Y. Urushigawa (1992c): Variation in microbial biomass and community structure in sediments of eutrophic bays as determined by phospholipid ester-linked fatty acids.Appl. Environ. Microbiol. 58, 562–571.

Rajendran, N., O. Matsuda, N. Imamura and Y. Urushigawa (1992d): Determination of microbial biomass and its community structure from the distribution of phospholipid ester-linked fatty acids in sediments of Hiroshima Bay and its adjacent bays.Estuarine, Coastal and Shelf Sci.,36, 501–514.

Rajendran, N., O. Matsuda and Y. Urushigawa (1993a): Microbial community structure in the sediments of Hiroshima Bay, Japan.Microbios,75, 205–215.

Rajendran, N., Y. Suwa and Y. Urushigawa (1993b): Distribution of phospholipid ester-linked fatty acid biomarkers for bacteria in the sediments of Ise Bay.Mar. Chem.,42, 39–56.

Rajendran, N., O. Matsuda, Y. Urushigawa and U. Simidu (1994): Characterization of microbial community structure in the surface sediment of Osaka Bay, Japan, by phospholipid fatty acid analysis.Appl. Environ. Microbiol.,60, 248–257.

Report (1992): Report on the environmental assessment of the operation of saline water removing system in the Kojima Lake and its impact on the fisheries. Okayama Ken association for the preservation of fisheries, 100 pp. (in Japanese).

Scholz, O. and P. I. Boon (1993): Biofilms on submerged river bed gum (Encalyptus camaldulensis Dehnh. Myrtaceae) wood in billabongs: an analysis of bacterial assemblages using phospholipid profiles.Hydrobiologia,259, 169–178.

Smetacek, V., U. Bathmann, E. M. Nothig and R. Scharek (1991): Coastal eutrophication: causes and consequences. p. 251–280. InOcean Margin Processes in Global Change, ed. by R. F. C. Mantoura, J. M. Martin and R. Wollast, John Wiley & Sons Ltd., Chichester, England.

Smith, G. A., J. S. Nickels, B. D. Kerger, J. D. Davis, S. P. Collins, J. T. Wilson, J. F. McNabb and D. C. White (1985): Quantitative characterization of microbial biomass and community structure in subsurface material: prokaryotic consortium responsive to organic contamination.Canadian J. Microbiol.,32, 104–111.

Smith, G. A., P. D. Nichols and D. C. White (1986): Fatty acids composition and microbial activity of benthic sediments from McMurdo sound, Antarctica.FEMS Microbiol. Ecol.,38, 219–231.

Strickland, J. D. H. and T. R. Parsons (1972):A Practical Handbook of Seawater Analysis. Bulletin No. 167, 2nd ed., Fisheries Research Board of Canada, Ottawa, 311 pp.

Taylor, J. and R. J. Parkes (1983): The cellular fatty acids of the sulphate reducing bacteria,Desulfobacter sp.,Desulfobulbus sp., andDesulfovibrio desulfuricans.J. Gen. Microbiol.,129, 3303–3309.

Taylor, J. and R. J. Parkes (1985): Identifying different populations of sulphate reducing bacteria within marine sediment systems, using fatty acid biomarkers.J. Gen. Microbiol.,131, 631–642.

Tsutsumi, H., T. Kikuchi, M. Tanaka, T. Higashi, K. Imasaka and M. Miyazaki (1991): Benthic faunal succession in a cove organically polluted by fish farming.Mar. Pollut. Bull.,23, 233–238.

Venkateswaran, K., S. W. Kim, H. Nakano, T. Onbe and H. Hashimoto (1989a): The association ofVibrio parahaemolyticus serotypes with zooplankton and its relationship with bacterial indicators of pollution.Syst. Appl. Microbiol.,11, 194–201.

Venkateswaran, K., H. Nakano, T. Okabe, K. Takayama, O. Matsuda and H. Hashimoto (1989b): Occurence and distribution ofVibrio spp.,Listonella spp., andClostridium botulinum in the Seto Inland Sea of Japan.Appl. Environ. Microbiol.,55, 559–567.

Volkman, J. K., R. B. Johns, F. T. Gillan, G. J. Perry and H. J. Bavor (1980): Microbial lipids of an intertidal sediment. I. Fatty acids and hydrocarbons.Geochim. Cosmochim. Acta,44, 1133–1143.

White, D. C. (1988): Validation of quantitative analysis for microbial biomass, community structure, and metabolic activity.Arch. Hydrobiol. Erg. Limnol.,31, 1–18.

White, D. C., W. M. Davis, J. S. Nichels, J. D. King and R. J. Bobbie (1979): Determination of the sedimentary microbial biomass by extractable lipid phosphate.Oecologia,40, 51–62.