Microbial community analysis of mesophilic anaerobic protein degradation process using bovine serum albumin (BSA)-fed continuous cultivation

Ikbal, 2002, Bacterial populations and degradation of sludge components in a modified two-series digestion process including sludge liquefaction, Jpn. J. Water Treat. Biol., 38, 193, 10.2521/jswtb.38.193

Gujer, 1983, Conversion processes in anaerobic digestion, Water Sci. Technol., 15, 127, 10.2166/wst.1983.0164

Breure, 1986, Protein degradation in anaerobic digestion: influence of volatile fatty acids and carbohydrates on hydrolysis and acidogenic fermentation of gelatin, Appl. Microbiol. Biotechnol., 24, 426, 10.1007/BF00294602

Fang, 1994, Performance and granule characteristics of UASB process treating wastewater with hydrolyzed proteins, Water Sci. Technol., 30, 55, 10.2166/wst.1994.0381

McInerney, 1988, Anaerobic hydrolysis and fermentation of fats and proteins, 373

Barker, 1981, Amino acid degradation by anaerobic bacteria, Ann. Rev. Biochem., 50, 23, 10.1146/annurev.bi.50.070181.000323

Elsden, 1979, Amino acid utilization patterns in Clsotridial taxonomy, Arch. Microbiol., 123, 137, 10.1007/BF00446812

Mead, 1971, The amino acid fermenting Clostridia, J. Gen. Microbiol., 67, 47, 10.1099/00221287-67-1-47

Cato, 1983, Synonymy of Peptococcus glycinophilus with Peptostreptococcus micros and electrophoretic differentiation of Peptostreptococcus micros from Peptecoccus magnus, Inst. J. Syst. Bacteriol., 33, 207, 10.1099/00207713-33-2-207

Dürre, 1983, Glycine fermentation via glycine reductase in Peptococcus glycinophilus and Peptococcus magnus, Arch. Microbiol., 134, 127, 10.1007/BF00407945

Whiteley, 1957, Fermentation of amino acids by Micrococcus aerogenes, J. Bacteriol., 74, 324, 10.1128/JB.74.3.324-330.1957

Stams, 1984, Fermentation of glutamate and other compounds by Acidaminobacter hydrogenoformas gen. nov., an obligate anaerobe isolated from black mud. Studies with pure cultures and mixed cultures with sulfate reducing and methanogenic bacteria, Arch. Microbiol., 137, 329, 10.1007/BF00410730

Baena, 1999, Aminomonas paucivorans gen. nov., sp. nov., a mesophilic, anaerobic, amino-acid-utilizing bacterium, Int. J. Syst. Bacteriol., 49, 975, 10.1099/00207713-49-3-975

Nanninga, 1987, Fermentation of glutamate by Selenomonas acidaminophila sp. nov., Arch. Microbiol., 147, 152, 10.1007/BF00415276

Hernandez-Eugenio, 2002, Sporanaerobacter acetigenes gen. nov., sp. nov., a novel acetogenic, facultatively sulfur-reducing bacterium, Int. J. Syst. Evol. Microbiol., 52, 1217, 10.1099/ijs.0.01992-0

Breitenstein, 2002, Reclassification of Clostridium hydroxybenzoicum as Sedimentibacter hydroxybenzoicus gen. nov., comb. nov., and description of Sedimentibacter saalensis sp. nov., Int. J. Syst. Evol. Microbiol., 52, 801, 10.1099/ijs.0.01998-0

Baena, 1998, Aminobacterium colombiense gen. nov. sp. nov., and amino acid-degrading anaerobe isolated from anaerobic sludge, Anaerobe, 4, 241, 10.1006/anae.1998.0170

Baena, 2000, Aminobacterium mobile sp. nov., a new anaerobic amino acid-degrading bacterium, Int. J. Syst. Evol. Microbiol., 50, 259, 10.1099/00207713-50-1-259

Amann, 1995, Phylogenetic identification and in situ detection of individual microbial cells without cultivation, Microbiol. Rev., 59, 143, 10.1128/MMBR.59.1.143-169.1995

Fang, 2002, Mesophilic acidification of gelatinaceous wastewater, J. Biotechnol., 93, 99, 10.1016/S0168-1656(01)00397-2

Ramsay, 2001, Protein degradation during anaerobic wastewater treatment: derivation of stoichiometry, Biodegradation, 12, 247, 10.1023/A:1013116728817

Tommaso, 2002, Morphological observation and microbial population dynamics in anaerobic polyurethane foam biofilm degrading gelatin, Brazil. J. Chem. Eng., 19, 287, 10.1590/S0104-66322002000300003

Yu, 2003, Acidogenesis of geletin-rich wastewater in an upflow anaerobic reactor: influence of pH and temperature, Water Res., 37, 55, 10.1016/S0043-1354(02)00256-7

Amann, 1995, In situ identification of micro-organisms by whole-cell hybridization with rRNA-targeted nucleic acid probes, 1

Amann, 1990, Combination of 16S rRNA-targeted oligonucleotide probes with flow cytometry for analyzing mixed microbial populations, Appl. Environ. Microbiol., 56, 1919, 10.1128/AEM.56.6.1919-1925.1990

Stahl, 1991, Development and application of nucleic acid probes, 205

Shigematsu, 2003, Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation, J. Biosci. Bioeng., 96, 547, 10.1016/S1389-1723(04)70148-6

Maidack, 2001, The RDP-II (Ribosomal Database Project), Nucleic Acids Res., 29, 173, 10.1093/nar/29.1.173

Altschul, 1997, Gapped BLAST and PSI-BLAST: a new generation of protein database search programs, Nucleic Acids Res., 25, 3389, 10.1093/nar/25.17.3389

Thompson, 1997, The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucleic Acids Res., 24, 4876, 10.1093/nar/25.24.4876

Kumar, 2001, MEGA2: molecular evolutionary genetics analysis software, Bioinformatics, 17, 1244, 10.1093/bioinformatics/17.12.1244

Saitou, 1987, The Neighbor-Joining method: a new method for constructing phylogenetic trees, Mol. Biol. Evol., 4, 406

Kimura, 1980, A simple method for estimating evolutionary rates of base substitution through comparative studies of nucleotide sequences, J. Mol. Evol., 16, 111, 10.1007/BF01731581

Felsenstein, 1985, Confidence limits of phylogenesis: an approach using the bootstrap, Evolution, 39, 783, 10.2307/2408678

Øvreås, 1997, Distribution of bacterioplankton in meromictic Lake Sælenvannet, as determined by denaturing gradient gel electrophoresis of PCR-amplified gene fragments coding for 16S rRNA, Appl. Environ. Microbiol., 63, 3367, 10.1128/AEM.63.9.3367-3373.1997

Namiki, 1986

Kida, 1993, Accumulation of propionic acid during anaerobic treatment of distillery wastewater from barely-shochu making, J. Ferment. Bioeng., 75, 213, 10.1016/0922-338X(93)90118-R

Yeoh, 2002, Simultaneous removal of TOC compounds and NO3− in a combined system of chemical and biological processes for the treatment of wastewater from rubber threat manufacturing, Jpn. J. Water Treat. Biol., 38, 57, 10.2521/jswtb.38.57

Lowry, 1951, Protein measurement with the Folin phenol reagent, J. Biol. Chem., 193, 265, 10.1016/S0021-9258(19)52451-6

Collins, 1994, The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations, Int. J. Syst. Bacteriol., 44, 812, 10.1099/00207713-44-4-812

Stackebrandt, 1997, Phylogenetic analysis of the genus Desulfotomaculum: evidence for the misclassification of Desulfotomaculum guttoideum and description of Desulfotomaculum orientis as Desulfosporosinus orientis gen. nov., comb. nov., Int. J. Syst. Bacteriol., 47, 1134, 10.1099/00207713-47-4-1134

Egert, 2003, Microbial community structure in midgut and hindgut of the humus-feeding larva of Pachnoda ephippiata (Coleoptera: Scarabaeidae), Appl. Environ. Microbiol., 69, 6659, 10.1128/AEM.69.11.6659-6668.2003

Hulshoff Pol, 1986, New technologies for anaerobic wastewater treatment, Water Sci. Technol., 18, 41, 10.2166/wst.1986.0162

Humayoun, 2003, Depth distribution of microbial diversity in Mono Lake, a meromictic soda lake in Califonia, Appl. Environ. Microbiol., 69, 1030, 10.1128/AEM.69.2.1030-1042.2003

Godon, 1997, Molecular microbial diversity of an anaerobic digestor as determined by small-subunit rDNA sequence analysis, Appl. Environ. Microbiol., 63, 2802, 10.1128/AEM.63.7.2802-2813.1997

Dojka, 1998, Microbial diversity in a hydrocarbon- and chlorinated-solvent-contaminated aquifer undergoing intrinsic bioremediation, Appl. Environ. Microbiol., 64, 3869, 10.1128/AEM.64.10.3869-3877.1998

Garrity, 2001, The road map to the manual, 1, 119

Schink, 1997, Energetics of syntrophic cooperation in methanogenic degradation, Microbiol. Mol. Biol. Rev., 61, 262, 10.1128/.61.2.262-280.1997

Kida, 1999, Influence of Ni2+ and Co2+ on methanogenic activity and the amounts of coenzymes involved in methanogenesis, J. Biosci. Bioeng., 91, 590, 10.1016/S1389-1723(01)80179-1

Gibson, 1988, Characterization of proteases formed by Bacteroides fragilis, J. Gen. Microbiol., 134, 2231

Gibson, 1988, Studies on the proteolytic activity of Bacteroides fragilis, J. Gen. Microbiol., 134, 19

Schink, 2002, Syntrophism among prokaryotes

Tarlera, 1999, Degradation of proteins and amino acids by Caloramator proteoclasticus in pure culture and in coculture with Methanobacterium thermoformicicum Z245, Appl. Microbiol. Biotechnol., 53, 133, 10.1007/s002530051626