Microbes: Mini Iron Factories

Springer Science and Business Media LLC - Tập 54 - Trang 483-485 - 2014
Kumar Batuk Joshi1
1Department of Geology, University of Delhi, Delhi, India

Tóm tắt

Microbes have flourished in extreme habitats since beginning of the Earth and have played an important role in geological processes like weathering, mineralization, diagenesis, mineral formation and destruction. Biotic mineralization is one of the most fascinating examples of how microbes have been influencing geological processes. Iron oxidizing and reducing bacteria are capable of precipitating wide varieties of iron oxides (magnetite), carbonates (siderite) and sulphides (greigite) via controlled or induced mineralization processes. Microbes have also been considered to play an important role in the history of evolution of sedimentary rocks on Earth from the formation of banded iron formations during the Archean to modern biotic bog iron and ochre deposits. Here, we discuss the role that microbes have been playing in precipitation of iron and the role and importance of interdisciplinary studies in the field of geology and biology in solving some of the major geological mysteries.

Tài liệu tham khảo

Murray AE, Kenig F, Fritsen CH et al (2014) Microbial life at −13 °C in the brine of an ice-sealed Antarctic lake. PNAS 109:20626–20631 Baker BJ, Banfield JF (2003) Microbial communities in acid mine drainage. FEMS Microbiol Ecol 44:139–152 Skidmore M, Anderson SP, Sharp M, Foght JM, Lanoil BD (2005) Comparison of microbial community compositions of two subglacial environments reveals a possible role for microbes in chemical weathering processes. Appl Environ Microbiol 71:6986–6997 Lanoil B, Skidmore M, Priscu JC, Han S, Foo W, Vogel SW, Tulaczyk S, Engelhardt H (2009) Bacteria beneath the West Antarctic Ice Sheet. Environ Microbiol 11:609–615 Boyd ES, Jackson RA, Encarnacion G et al (2007) Isolation, characterization, and ecology of sulfur-respiring crenarchaea inhabiting acid-sulfate-chloride-containing geothermal springs in Yellowstone National Park. Appl Environ Microbiol 73:6669–6677 Kozubal M, Macur RE, Korf S, Taylor WP, Ackerman GG, Nagy A, Inskeep WP (2008) Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park. Appl Environ Microbiol 74:942–949 Miroshnichenko ML, L’Haridon S, Schumann P, Spring S, Bonch-Osmolovskaya EA, Jeanthon C, Stackebrandt E (2004) Caminibacter profundus sp. nov., a novel thermophile of Nautiliales ord. nov. within the class ‘Epsilonproteobacteria’, isolated from a deep-sea hydrothermal vent. Int J Syst Evol Microbiol 54:41–45 Xi J, He L-Y, Huang Z, Sheng X-F (2014) Bacillus qingshengiisp. nov., a rock-weathering bacterium isolated from weathered rock surface. IJSEM 64:2473–2479. doi:10.1099/ijs.0.061929-0 Posth NR, Canfield D, Kappler A (2014) Biogenic Fe(III) minerals: from formation to diagenesis and preservation in the rock record. Earth Sci Rev 135:103–121 Mumford AC, Barringer JL, Benzel WM, Reilly PA, Young LA (2012) Microbial transformations of arsenic: mobilization from glauconitic sediments to water. Water Res 49:2859–2868 Wyatt NJ, Milne A, Woodward EMS et al (2014) Biogeochemical cycling of dissolved zinc along the GEOTRACES South Atlantic transect GA10 at 40 °S. Glob Biogeochem Cycle 28:44–56 Gadd GM (2012) Microbial roles in mineral transformations and metal cycling in the earth’s critical zone. Molecular environmental soil science. Springer, Amsterdam, pp 115–165 Gieg LM, Fowler SJ, Berdugo-Clavijo C (2014) Syntrophic biodegradation of hydrocarbon contaminants. Curr Opin Biotechnol 27:21–29 Tomaso RR, Bontognali TRR, Sessions AL, Allwood AC, Fischer WW, Grotzinger JP, Summons RE, Eiler JM (2012) Sulfur isotopes of organic matter preserved in 3.45-billion-year-old stromatolites reveal microbial metabolism. PNAS 109:15146–15151 Grosch EG, McLoughlin N (2014) Reassessing the biogenicity of Earth’s oldest trace fossil with implications for biosignatures in the search for early life. PNAS 111:8380–8385 Jimenez-Lopez C, Romanek CS, Bazylinski DA (2010) Magnetite as a prokaryotic biomarker: a review. J Geophys Res 115:G00G03. doi:10.1029/2009JG001152 Abreu F, Cantão ME, Nicolás MF et al (2011) Common ancestry of iron oxide- and iron-sulfide-based biomineralization in magnetotactic bacteria. ISME J 5:1634–1640 Gilbert PUPA, Frazer BH, Abrecht M (2005) The organic-mineral interface in biominerals. reviews in mineralogy and geochemistry. In: Banifield JF, Nealson KH, Cervini-Silva J (eds) Molecular geomicrobiology, vol 59, Mineralogical Society of America, Washington DC, pp 157–185 Perry RS, McLoughlin N, Lynne BY et al (2007) Defining biominerals and organominerals: direct and indirect indicators of life. Sed Geol 201:157–179 Weiner S, Dove PM (2003) An overview of biomineralization processes and the problem of the vital effect. Rev Miner Geochem 54:1–29 Javaux EJ, Benzerara K (2009) Microfossils. CR Palevol 8:605–615 Brasier MD, Wacey D (2012) Fossils and astrobiology: newprotocols for cell evolution in deep time. Int J Astrobiol 11:217–228 Dupraz C, Reid RP, Braissant O, Decho AW, Norman RS, Visscher PT (2009) Processes of carbonate precipitation in modern microbial mats. Earth Sci Rev 96:141–162 Frankel RB, Bazylinski DA (2003) Biologically induced mineralization by bacteria. Rev Miner Geochem 54:95–114 Roh Y, Liu SV, Li G, Huang H, Phelps TJ, Zhou J (2002) Isolation and characterization of metal-reducing Thermoanaerobacter strains from deep subsurface environments of the Piceance Basin, Colorado. Appl Environ Microbiol 68:6020–6103 Bazylinski DA, Frankel RB (2003) Biologically controlled mineralization in prokaryotes. Rev Miner Geochem 54:217–247 Spring S, Amann R, Ludwig W, Schleifer K-H, van Gemerden H, Petersen N (1993) Dominating role of an unusual magnetotactic bacterium in the microaerobic zone of a freshwater sediment. Appl Environ Microbiol 59:2397–2403 Simmons SL, Bazylinski DA, Edwards KJ (2007) Population dynamics of marine magnetotactic bacteria in a meromictic salt pond described with qPCR. Environ Microbiol 9:2162–2174 Bazylinski DA (1995) Structure and function of the bacterial magnetosome. ASM News 61:337–343 Bazylinski DA, Frankel RB, Heywood BR, Mann S, King JW, Donaghay PL, Hanson AK (1995) Controlled biomineralization of magnetite (Fe3O4) and greigite (Fe3S4) in a magnetotactic bacterium. Appl Environ Microbiol 61:3232–3239 Blakemore RP, Short KA, Bazylinski DA, Rosenblatt C, Frankel RB (1985) Microaerobic conditions are required for magnetite formation within Aquaspirillum magnetotacticum. Geomicrobiol J 4:53–71 Konhauser KO, Kappler A, Eric EE (2011) Iron in microbial metabolism. Elements 7:89–93 Taylor KG, Konhauser KO (2011) Iron in Earth surface systems: a major player in chemical and biological processes. Elements 7:83–88 Fortin D, Langley S (2005) Formation and occurrence of biogenic iron-rich minerals. Earth-Sci Rev 72:1–19 Templeton AS (2011) Geomicrobiology of iron in extreme environments. Elements 7:95–100 Ehrenreich A, Widdel F (1994) Anaerobic oxidation of ferrous iron by purple bacteria, a new type of phototrophic metabolism. Appl Environ Microbiol 60:4517–4526 Benzerara K, Meibom A, Gautier Q et al (2010) Nanotextures of aragonite in tomatolites from Quasi marine lake Satonda Crater, Indonesia. J Geol Soc Lond 336:211–224 Taylor KG, Macquaker JHS (2011) Iron minerals in marine sediments record chemical environments. Elements 7:113–118 Ehrlich HL, Newman DK (2009) Geomicrobiology, 5th edn. CRC Press/Taylor & Francis, Boca Raton Konhauser K, Hamade T, Raiswell R, Morris RC, Ferris FG, Southam G, Canfield DE (2002) Could bacteria have formed the Precambrian banded iron formations? Geology 30:1079–1082 Bekker A, Slack JF, Planavsky N, Krapež B, Hofmann A, Konhauser KO, Rouxel OJ (2010) Iron formation: the sedimentary product of a complex interplay among mantle, tectonic, oceanic, and biospheric processes. Econ Geol 105:467–508 Craddock PR, Dauphas N (2011) Iron and carbon isotope evidence for microbial iron respiration throughout the Archean. EPSL 303:121–132 Pierson BK, Parenteau MN (2000) Phototrophs in high iron microbial mats: microstructure of mats in iron-depositing hot springs. FEMS 32:181–196 Puchelt H, Schrock HH, Schroll E (1973) Recente marine Eisenerze auf Santorini Griechenland, I. Geochemie, Entstehung, Mineralogie. Geol Rundsch 62:786–803 Li J, Benzerara K, Bernard S, Beyssac O (2013) The link between biomineralization and fossilization of bacteria: insights from field and experimental studies. Chem Geol 239:49–69