Microarray analysis of differentiation-specific gene expression during 3T3-L1 adipogenesis

Gene - Tập 329 - Trang 167-185 - 2004
Gregory R. Burton1,2, Radhakrishnan Nagarajan1,3, Charlotte A. Peterson1,3,4,5, Robert E. McGehee1,2,4,6
1University of Arkansas for Medical Sciences, Little Rock, AR 72205, USA
2Department of Pediatrics/Division of Neonatology, Little Rock, AR 72205, USA
3Department of Geriatrics/Donald W. Reynolds Center on Aging, Little Rock, AR 72205, USA
4Arkansas Cancer Research Center, Little Rock, AR 72205, USA
5Central Arkansas Veterans Health Care System, Little Rock, AR 72205, USA
6Arkansas Children's Hospital, Little Rock, AR 72205, USA

Tài liệu tham khảo

Burton, 2002, Microarray analysis of gene expression during early adipocyte differentiation, Gene, 293, 21, 10.1016/S0378-1119(02)00726-6 Classon, 2000, Opposing roles of pRB and p107 in adipocyte differentiation, Proc. Natl. Acad. Sci. U. S. A., 97, 10826, 10.1073/pnas.190343597 Corbin, 2003, Toward a protein profile of E. coli: comparison to its transcription profile, Proc. Natl. Acad. Sci. of U. S. A., 100, 9232, 10.1073/pnas.1533294100 Cowherd, 1999, Molecular regulation of adipocyte differentiation, Semin. Cell Dev. Biol., 10, 3, 10.1006/scdb.1998.0276 Eisen, 1998, Cluster analysis and display of genome-wide expression patterns, Proc. Natl. Acad. Sci. U. S. A., 95, 14863, 10.1073/pnas.95.25.14863 Furusu, 2001, Expression, regulation, and function of inhibitor of apoptosis family genes in rat mesangial cells, Kidney Int., 60, 579, 10.1046/j.1523-1755.2001.060002579.x Guo, 2000, Analysis of gene expression profile during 3T3-L1 preadipocyte differentiation, Gene, 251, 45, 10.1016/S0378-1119(00)00192-X Haas, 1995, Identification of a sequence-specific single-stranded DNA binding protein that suppresses transcription of the mouse myelin basic protein gene, J. Biol. Chem., 270, 12503, 10.1074/jbc.270.21.12503 Irizarry, 2003, Summaries of Affymetrix GeneChip probe level data, Nucleic Acids Res., 31, e15, 10.1093/nar/gng015 Kaneko, 1998, Regulation of gene expression at the beginning of mammalian development and the TEAD family of transcription factors, Dev. Genet., 22, 43, 10.1002/(SICI)1520-6408(1998)22:1<43::AID-DVG5>3.0.CO;2-7 Kobayashi, 1999, Expression of a murine homologue of the inhibitor of apoptosis protein is related to cell proliferation, Proc.Natl. Acad. Sci. U. S. A., 96, 1457, 10.1073/pnas.96.4.1457 Li, 2001, Model-based analysis of oligonucleotide arrays: expression index computation and outlier detection, Proc. Natl. Acad. Sci. U. S. A., 98, 31, 10.1073/pnas.011404098 Lin, 1992, Antisense CCAAT/enhancer-binding protein RNA suppresses coordinate gene expression and triglyceride accumulation during differentiation of 3T3-L1 preadipocytes, Genes Dev., 6, 533, 10.1101/gad.6.4.533 Lin, 1994, CCAAT/enhancer binding protein alpha is sufficient to initiate the 3T3-L1 adipocyte differentiation program, Proc. Natl. Acad. Sci. U. S. A., 91, 8757, 10.1073/pnas.91.19.8757 Liu, 2000, Cloning, tissue expression pattern and genomic organization of latexin, a human homologue of rat carboxypeptidase A inhibitor, Mol. Biol. Rep., 27, 241, 10.1023/A:1010971219806 Lockhart, 1996, Expression monitoring by hybridization to high-density oligonucleotide arrays, Nat. Biotechnol., 14, 1675, 10.1038/nbt1296-1675 Lyle, 1998, TNFalpha disrupts mitotic clonal expansion and regulation of retinoblastoma proteins p130 and p107 during 3T3-L1 adipocyte differentiation, Biochem. Biophys. Res. Commun., 247, 373, 10.1006/bbrc.1998.8773 MacDougald, 1995, Transcriptional regulation of gene expression during adipocyte differentiation, Annu. Rev. Biochem., 64, 345, 10.1146/annurev.bi.64.070195.002021 May, 2001, Antisense suppression of p107 inhibits 3T3-L1 adipocyte differentiation, Biochem. Biophys. Res. Commun., 283, 837, 10.1006/bbrc.2001.4886 Morrison, 1999, Role of PPARgamma in regulating a cascade expression of cyclin-dependent kinase inhibitors, p18(INK4c) and p21(Waf1/Cip1), during adipogenesis, J. Biol. Chem., 274, 17088, 10.1074/jbc.274.24.17088 Pedron, 2003, The invasive phenotype of Shigella flexneri directs a distinct gene expression pattern on the human intestinal epithelial cell line Caco-2, J. Biol. Chem., 278, 33878, 10.1074/jbc.M303749200 Pietu, 1996, Novel gene transcripts preferentially expressed in human muscles revealed by quantitative hybridization of a high density cDNA array, Genome Res., 6, 492, 10.1101/gr.6.6.492 Primakoff, 2000, The ADAM gene family: surface proteins with adhesion and protease activity, Trends Genet., 16, 83, 10.1016/S0168-9525(99)01926-5 Prince, 2002, Proteasomal degradation of retinoblastoma-related p130 during adipocyte differentiation, Biochem. Biophys. Res. Commun., 290, 1066, 10.1006/bbrc.2001.6291 Richon, 1997, Regulation and expression of retinoblastoma proteins p107 and p130 during 3T3-L1 adipocyte differentiation, J. Biol. Chem., 272, 10117, 10.1074/jbc.272.15.10117 Ross, 2002, Microarray analyses during adipogenesis: understanding the effects of Wnt signaling on adipogenesis and the roles of liver X receptor alpha in adipocyte metabolism, Mol. Cell. Biol., 22, 5989, 10.1128/MCB.22.16.5989-5999.2002 Schoonjans, 1996, PPARalpha and PPARgamma activators direct a distinct tissue-specific transcriptional response via a PPRE in the lipoprotein lipase gene, EMBO J., 15, 5336, 10.1002/j.1460-2075.1996.tb00918.x Smas, 1993, Pref-1, a protein containing EGF-like repeats, inhibits adipocyte differentiation, Cell, 73, 725, 10.1016/0092-8674(93)90252-L Takahara, 1994, Bone morphogenetic protein-1 and a mammalian tolloid homologue (mTld) are encoded by alternatively spliced transcripts which are differentially expressed in some tissues, J. Biol. Chem., 269, 32572, 10.1016/S0021-9258(18)31672-7 Tamayo, 1999, Interpreting patterns of gene expression with self-organizing maps: methods and application to hematopoietic differentiation, Proc. Natl. Acad. Sci. U. S. A., 96, 2907, 10.1073/pnas.96.6.2907 Zhang, 2001, Rb-mediated chromatin structure regulation and transcriptional repression, Oncogene, 20, 3134, 10.1038/sj.onc.1204338