MicroRNAs

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Ambros, 2003, MicroRNAs and other tiny endogenous RNAs in C. elegans, Curr. Biol., 13, 807, 10.1016/S0960-9822(03)00287-2

Aravin, 2001, Double-stranded RNA-mediated silencing of genomic tandem repeats and transposable elements in Drosophila melanogaster germline, Curr. Biol., 11, 1017, 10.1016/S0960-9822(01)00299-8

Aravin, 2003, The small RNA profile during Drosophila melanogaster development, Dev. Cell, 5, 337, 10.1016/S1534-5807(03)00228-4

Aukerman, 2003, Regulation of flowering time and floral organ identity by a MicroRNA and its APETALA2-like target genes, Plant Cell, 10, 10

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Basyuk, 2003, Human let-7 stem-loop precursors harbor features of RNase III cleavage products, Nucleic Acids Res., 31, 6593, 10.1093/nar/gkg855

Bernstein, 2001, Role for a bidentate ribonuclease in the initiation step of RNA interference, Nature, 409, 295, 10.1038/35053110

Bohmert, 1998, AGO1 defines a novel locus of Arabidopsis controlling leaf development, EMBO J., 17, 170, 10.1093/emboj/17.1.170

Bollman, 2003, HASTY, the Arabidopsis ortholog of exportin 5/MSN5, regulates phase change and morphogenesis, Development, 130, 1493, 10.1242/dev.00362

Brennecke, 2003, bantam encodes a developmentally regulated microRNA that controls cell proliferation and regulates the proapoptotic gene hid in Drosophila, Cell, 113, 25, 10.1016/S0092-8674(03)00231-9

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Catalanotto, 2000, Gene silencing in worms and fungi, Nature, 404, 245, 10.1038/35005169

Caudy, 2002, Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev., 16, 2491, 10.1101/gad.1025202

Caudy, 2003, A micrococcal nuclease homologue in RNAi effector complexes, Nature, 425, 411, 10.1038/nature01956

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Chen, 2004, MicroRNAs modulate hematopoietic lineage differentiation, Science, 303, 83, 10.1126/science.1091903

Cogoni, 1999, Gene silencing in Neurospora crassa requires a protein homologous to RNA-dependent RNA polymerase, Nature, 399, 166, 10.1038/20215

Dalmay, 2000, An RNA-dependent RNA polymerase in Arabidopsis is required for posttranscriptional gene silencing mediated by a transgene but not by a virus, Cell, 101, 543, 10.1016/S0092-8674(00)80864-8

Doench, 2003, siRNAs can function as miRNAs, Genes Dev., 17, 438, 10.1101/gad.1064703

Dostie, 2003, Numerous microRNPs in neuronal cells containing novel microRNAs, RNA, 9, 631, 10.1261/rna.2141503

Dykxhoorn, 2003, Killing the messenger, Nat. Rev. Mol. Cell Biol., 4, 457, 10.1038/nrm1129

Elbashir, 2001, RNA interference is mediated by 21- and 22- nucleotide RNAs, Genes Dev., 15, 188, 10.1101/gad.862301

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Emery, 2003, Radial patterning of arabidopsis shoots by class III HD-ZIP and KANADI genes, Curr. Biol., 13, 1768, 10.1016/j.cub.2003.09.035

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Fire, 1998, Potent and specific genetic interference by double-stranded RNA in Caenorhabditis elegans, Nature, 391, 806, 10.1038/35888

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Griffiths-Jones, 2004, The microRNA registry, Nucleic Acids Res., 32, D109, 10.1093/nar/gkh023

Grishok, 2001, Genes and mechanisms related to RNA interference regulate expression of the small temporal RNAs that control C. elegans developmental timing, Cell, 106, 23, 10.1016/S0092-8674(01)00431-7

Hall, 2002, Establishment and maintenance of a heterochromatin domain, Science, 297, 2232, 10.1126/science.1076466

Hamilton, 1999, A novel species of small antisense RNA in posttranscriptional gene silencing, Science, 286, 950, 10.1126/science.286.5441.950

Hamilton, 2002, Two classes of short interfering RNA in RNA silencing, Embo J., 21, 4671, 10.1093/emboj/cdf464

Hammond, 2000, An RNA-directed nuclease mediates posttranscriptional gene silencing in Drosophila cells, Nature, 404, 293, 10.1038/35005107

Hammond, 2001, Argonaute2, a link between genetic and biochemical analyses of RNAi, Science, 293, 1146, 10.1126/science.1064023

Hipfner, 2002, The bantam gene regulates Drosophila growth, Genetics, 161, 1527, 10.1093/genetics/161.4.1527

Houbaviy, 2003, Embryonic stem cell-specific microRNAs, Dev. Cell, 5, 351, 10.1016/S1534-5807(03)00227-2

Hutvágner, 2002, A microRNA in a multiple-turnover RNAi enzyme complex, Science, 297, 2056, 10.1126/science.1073827

Hutvágner, 2001, A cellular function for the RNA-interference enzyme Dicer in the maturation of the let-7 small temporal RNA, Science, 293, 834, 10.1126/science.1062961

Ishizuka, 2002, A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins, Genes Dev., 16, 2497, 10.1101/gad.1022002

Jackson, 2003, Expression profiling reveals off-target gene regulation by RNAi, Nat. Biotechnol., 21, 635, 10.1038/nbt831

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Johnson, 2003, The time of appearance of the C. elegans let-7 microRNA is transcriptionally controlled utilizing a temporal regulatory element in its promoter, Dev. Biol., 259, 364, 10.1016/S0012-1606(03)00202-1

Johnston, 2003, A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans, Nature, 426, 845, 10.1038/nature02255

Kasschau, 2003, P1/HC-Pro, a viral suppressor of RNA silencing, interferes with Arabidopsis development and miRNA function, Dev. Cell, 4, 205, 10.1016/S1534-5807(03)00025-X

Kawasaki, 2003, Hes1 is a target of microRNA-23 during retinoic-acid-induced neuronal differentiation of NT2 cells, Nature, 423, 838, 10.1038/nature01730

Kawasaki, 2003, retraction, Nature, 426, 100, 10.1038/nature02141

Ketting, 1999, Mut-7 of C. elegans, required for transposon silencing and RNA interference, is a homolog of Werner sydrome helicase and RNaseD, Cell, 99, 133, 10.1016/S0092-8674(00)81645-1

Ketting, 2001, Dicer functions in RNA interference and in synthesis of small RNA involved in developmental timing in C. elegans, Genes Dev., 15, 2654, 10.1101/gad.927801

Khvorova, 2003, Functional siRNAs and miRNAs exhibit strand bias, Cell, 115, 209, 10.1016/S0092-8674(03)00801-8

Kim, 2003, Identification of many microRNAs that copurify with polyribosomes in mammalian neurons, Proc. Natl. Acad. Sci. USA. Published online December, 22, 2003

Knight, 2001, A role for the RNase III enzyme DCR-1 in RNA interference and germ line development, in caenorhabditis elegens, Science, 293, 2269, 10.1126/science.1062039

Krichevsky, 2003, A microRNA array reveals extensive regulation of microRNAs during brain development, RNA, 9, 1274, 10.1261/rna.5980303

Kuersten, 2003, The power of the 3′ UTR, Nat. Rev. Genet., 4, 626, 10.1038/nrg1125

Lagos-Quintana, 2001, Identification of novel genes coding for small expressed RNAs, Science, 294, 853, 10.1126/science.1064921

Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6

Lagos-Quintana, 2003, New microRNAs from mouse and human, RNA, 9, 175, 10.1261/rna.2146903

Lai, 2002, MicroRNAs are complementary to 3′UTR motifs that mediate negative post-transcriptional regulation, Nat. Genet., 30, 363, 10.1038/ng865

Lai, 2003, Computational identification of Drosophila microRNA genes, Genome Biol, 4:R42, 1

Lau, 2001, An abundant class of tiny RNAs with probable regulatory roles in Caenorhabditis elegans, Science, 294, 858, 10.1126/science.1065062

Lee, 2001, An extensive class of small RNAs in Caenorhabditis elegans, Science, 294, 862, 10.1126/science.1065329

Lee, 1993, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14, Cell, 75, 843, 10.1016/0092-8674(93)90529-Y

Lee, 2002, MicroRNA maturation, EMBO J., 21, 4663, 10.1093/emboj/cdf476

Lee, 2003, The nuclear RNase III Drosha initiates microRNA processing, Nature, 425, 415, 10.1038/nature01957

Lewis, 2003, Prediction of mammalian microRNA targets, Cell, 115, 787, 10.1016/S0092-8674(03)01018-3

Li, 2002, Induction and suppression of RNA silencing by an animal virus, Science, 296, 1319, 10.1126/science.1070948

Lim, 2003, The microRNAs of Caenorhabditis elegans, Genes Dev., 17, 991, 10.1101/gad.1074403

Lim, 2003, Vertebrate microRNA genes, Science, 299, 1540, 10.1126/science.1080372

Lin, 2003, The C. elegans hunchback homolog, hbl-1, controls temporal patterning and is a probable microRNA target, Dev. Cell, 4, 639, 10.1016/S1534-5807(03)00124-2

Lingel, 2003, Structure and nucleic-acid binding of the Drosophila Argonaute 2 PAZ domain, Nature, 426, 465, 10.1038/nature02123

Llave, 2002, Endogenous and silencing-associated small RNAs in plants, Plant Cell, 14, 1605, 10.1105/tpc.003210

Llave, 2002, Cleavage of Scarecrow-like mRNA targets directed by a class of Arabidopsis miRNA, Science, 297, 2053, 10.1126/science.1076311

Lund, 2004, Nuclear export of microRNA precursors, Science, 303, 95, 10.1126/science.1090599

Martinez, 2002, Single-stranded antisense siRNAs guide target RNA cleavage in RNAi, Cell, 110, 563, 10.1016/S0092-8674(02)00908-X

McConnell, 2001, Role of PHABULOSA and PHAVOLUTA in determining radial patterning in shoots, Nature, 411, 709, 10.1038/35079635

Meneely, 1979, Lethals, steriles and deficiencies in a region of the X chromosome of Caenorhabditis elegans, Genetics, 92, 99, 10.1093/genetics/92.1.99

Mette, 2000, Transcriptional silencing and promoter methylation triggered by double-stranded RNA, EMBO J., 19, 5194, 10.1093/emboj/19.19.5194

Mette, 2002, Short RNAs can identify new candidate transposable element families in Arabidopsis, Plant Physiol., 130, 6, 10.1104/pp.007047

Michael, 2003, Reduced accumulation of specific microRNAs in colorectal neoplasia, Mol. Cancer Res., 1, 882

Mochizuki, 2002, Analysis of a piwi-related gene implicates small RNAs in genome rearrangement in tetrahymena, Cell, 110, 689, 10.1016/S0092-8674(02)00909-1

Moss, 1997, The cold shock domain protein LIN-28 controls developmental timing in C. elegans and is regulated by the lin-4 RNA, Cell, 88, 637, 10.1016/S0092-8674(00)81906-6

Mourelatos, 2002, miRNPs, Genes Dev., 16, 720, 10.1101/gad.974702

Mourrain, 2000, Arabidopsis SGS2 and SGS3 genes are required for posttranscriptional gene silencing and natural virus resistance, Cell, 101, 533, 10.1016/S0092-8674(00)80863-6

Nykänen, 2001, ATP requirements and small interfering RNA structure in the RNA interference pathway, Cell, 107, 309, 10.1016/S0092-8674(01)00547-5

Ohler, 2004, Patterns of flanking sequence conservation and a characteristic upstream motif for microRNA gene identification, RNA, in press

Olsen, 1999, The lin-4 regulatory RNA controls developmental timing in Caenorhabditis elegans by blocking LIN-14 protein synthesis after the initiation of translation, Dev. Biol., 216, 671, 10.1006/dbio.1999.9523

Palatnik, 2003, Control of leaf morphogenesis by microRNAs, Nature, 425, 257, 10.1038/nature01958

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Park, 2002, CARPEL FACTORY, a Dicer homolog, and HEN1, a novel protein, act in microRNA metabolism in Arabidopsis thaliana, Curr. Biol., 12, 1484, 10.1016/S0960-9822(02)01017-5

Parrish, 2000, Functional anatomy of a dsRNA trigger, Mol. Cell, 6, 1077, 10.1016/S1097-2765(00)00106-4

Pasquinelli, 2000, Conservation across animal phylogeny of the sequence and temporal regulation of the 21 nucleotide let-7 heterochronic regulatory RNA, Nature, 408, 86, 10.1038/35040556

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Pusch, 2003, Nucleotide sequence homology requirements of HIV-1-specific short hairpin RNA, Nucleic Acids Res., 31, 6444, 10.1093/nar/gkg876

Reinhart, 2002, Small RNAs correspond to centromere heterochromatic repeats, Science, 297, 1831, 10.1126/science.1077183

Reinhart, 2000, The 21 nucleotide let-7 RNA regulates developmental timing in Caenorhabditis elegans, Nature, 403, 901, 10.1038/35002607

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