MicroRNA function in neuronal development, plasticity and disease

Roberto Fiore1, Gabriele Siegel1, Gerhard Schratt1
1Interdisziplinäres Zentrum für Neurowissenschaften, SFB488 Junior Group, Universität Heidelberg, and Institut für Neuroanatomie, Universitätsklinikum Heidelberg, Im Neuenheimer Feld 345, 69120 Heidelberg, Germany

Tài liệu tham khảo

Bartel, 2004, MicroRNAs: genomics, biogenesis, mechanism, and function, Cell, 116, 281, 10.1016/S0092-8674(04)00045-5 Bushati, 2007, MicroRNA functions, Annu. Rev. Cell Dev. Biol.Please provide the following: volume number, issue details, and pagination information here, 10.1146/annurev.cellbio.23.090506.123406 Borchert, 2006, RNA polymerase III transcribes human MicroRNAs, Nat. Struct. Mol. Biol., 13, 1097, 10.1038/nsmb1167 Standart, 2007, MicroRNAs repress translation of m7Gppp-capped target mRNAs in vitro by inhibiting initiation and promoting deadenylation, Genes Dev., 21, 1975, 10.1101/gad.1591507 Jackson, 2007, How do microRNAs regulate gene expression?, Sci. STKE, re1, 10.1126/stke.3672007re1 Pillai, 2007, Repression of protein synthesis by miRNAs: how many mechanisms?, Trends Cell Biol., 17, 118, 10.1016/j.tcb.2006.12.007 Krichevsky, 2001, Neuronal RNA granules: a link between RNA localization and stimulation-dependent translation, Neuron, 32, 683, 10.1016/S0896-6273(01)00508-6 Barbee, 2006, Staufen- and FMRP-containing neuronal RNPs are structurally and functionally related to somatic P bodies, Neuron, 52, 997, 10.1016/j.neuron.2006.10.028 Kloosterman, 2006, The diverse functions of microRNAs in animal development and disease, Dev. Cell, 11, 441, 10.1016/j.devcel.2006.09.009 Lewis, 2005, Conserved seed pairing, often flanked by adenosines, indicates that thousands of human genes are microRNA targets, Cell, 120, 15, 10.1016/j.cell.2004.12.035 Lagos-Quintana, 2002, Identification of tissue-specific microRNAs from mouse, Curr. Biol., 12, 735, 10.1016/S0960-9822(02)00809-6 Kim, 2004, Identification of many microRNAs that copurify with polyribosomes in mammalian neurons, Proc. Natl. Acad. Sci. U. S. A., 101, 360, 10.1073/pnas.2333854100 Nelson, 2004, miRNP:mRNA association in polyribosomes in a human neuronal cell line, RNA, 10, 387, 10.1261/rna.5181104 Miska, 2004, Microarray analysis of microRNA expression in the developing mammalian brain, Genome Biol., 5, R68, 10.1186/gb-2004-5-9-r68 Wienholds, 2005, MicroRNA expression in zebrafish embryonic development, Science, 309, 310, 10.1126/science.1114519 Smirnova, 2005, Regulation of miRNA expression during neural cell specification, Eur. J. Neurosci., 21, 1469, 10.1111/j.1460-9568.2005.03978.x Kapsimali, 2007, MicroRNAs show a wide diversity of expression profiles in the developing and mature central nervous system, Genome Biol., 8, R173, 10.1186/gb-2007-8-8-r173 Landgraf, 2007, A mammalian microRNA expression atlas based on small RNA library sequencing, Cell, 129, 1401, 10.1016/j.cell.2007.04.040 Lagos-Quintana, 2001, Identification of novel genes coding for small expressed RNAs, Science, 294, 853, 10.1126/science.1064921 Berezikov, 2006, Diversity of microRNAs in human and chimpanzee brain, Nat. Genet., 38, 1375, 10.1038/ng1914 Kawahara, 2007, Redirection of silencing targets by adenosine-to-inosine editing of miRNAs, Science, 315, 1137, 10.1126/science.1138050 Obernosterer, 2006, Post-transcriptional regulation of microRNA expression, RNA, 12, 1161, 10.1261/rna.2322506 Thomson, 2006, Extensive post-transcriptional regulation of microRNAs and its implications for cancer, Genes Dev., 20, 2202, 10.1101/gad.1444406 Chalfie, 1981, Mutations that lead to reiterations in the cell lineages of C. elegans, Cell, 24, 59, 10.1016/0092-8674(81)90501-8 Ambros, 1989, A hierarchy of regulatory genes controls a larva-to-adult developmental switch in C. elegans, Cell, 57, 49, 10.1016/0092-8674(89)90171-2 Lee, 1993, The C. elegans heterochronic gene lin-4 encodes small RNAs with antisense complementarity to lin-14, Cell, 75, 843, 10.1016/0092-8674(93)90529-Y Wightman, 1993, Posttranscriptional regulation of the heterochronic gene lin-14 by lin-4 mediates temporal pattern formation in C. elegans, Cell, 75, 855, 10.1016/0092-8674(93)90530-4 Giraldez, 2005, MicroRNAs regulate brain morphogenesis in zebrafish, Science, 308, 833, 10.1126/science.1109020 Bernstein, 2003, Dicer is essential for mouse development, Nat. Genet., 35, 215, 10.1038/ng1253 Makeyev, 2007, The MicroRNA miR-124 promotes neuronal differentiation by triggering brain-specific alternative pre-mRNA splicing, Mol. Cell, 27, 435, 10.1016/j.molcel.2007.07.015 Schaefer, 2007, Cerebellar neurodegeneration in the absence of microRNAs, J. Exp. Med., 204, 1553, 10.1084/jem.20070823 Kim, 2007, A MicroRNA feedback circuit in midbrain dopamine neurons, Science, 317, 1220, 10.1126/science.1140481 Wang, 2007, DGCR8 is essential for microRNA biogenesis and silencing of embryonic stem cell self-renewal, Nat. Genet., 39, 380, 10.1038/ng1969 Johnston, 2005, MicroRNAs acting in a double-negative feedback loop to control a neuronal cell fate decision, Proc. Natl. Acad. Sci. U. S. A., 102, 12449, 10.1073/pnas.0505530102 Johnston, 2003, A microRNA controlling left/right neuronal asymmetry in Caenorhabditis elegans, Nature, 426, 845, 10.1038/nature02255 Krichevsky, 2006, Specific microRNAs modulate embryonic stem cell-derived neurogenesis, Stem Cells, 24, 857, 10.1634/stemcells.2005-0441 Conaco, 2006, Reciprocal actions of REST and a microRNA promote neuronal identity, Proc. Natl. Acad. Sci. U. S. A., 103, 2422, 10.1073/pnas.0511041103 Visvanathan, 2007, The microRNA miR-124 antagonizes the anti-neural REST/SCP1 pathway during embryonic CNS development, Genes Dev., 21, 744, 10.1101/gad.1519107 Orom, 2006, LNA-modified oligonucleotides mediate specific inhibition of microRNA function, Gene, 372, 137, 10.1016/j.gene.2005.12.031 Meister, 2004, Sequence-specific inhibition of microRNA- and siRNA-induced RNA silencing, RNA, 10, 544, 10.1261/rna.5235104 Hutvagner, 2004, Sequence-specific inhibition of small RNA function, PLoS Biol., 2, E98, 10.1371/journal.pbio.0020098 Wu, 2006, Comparative sequence analysis reveals an intricate network among REST, CREB and miRNA in mediating neuronal gene expression, Genome Biol., 7, R85, 10.1186/gb-2006-7-9-r85 Wu, 2005, Micro-RNA regulation of the mammalian lin-28 gene during neuronal differentiation of embryonal carcinoma cells, Mol. Cell. Biol., 25, 9198, 10.1128/MCB.25.21.9198-9208.2005 Li, 2006, MicroRNA-9a ensures the precise specification of sensory organ precursors in Drosophila, Genes Dev., 20, 2793, 10.1101/gad.1466306 Li, 2005, A microRNA mediates EGF receptor signaling and promotes photoreceptor differentiation in the Drosophila eye, Cell, 123, 1267, 10.1016/j.cell.2005.10.040 Bonhoeffer, 2002, Spine motility. Phenomenology, mechanisms, and function, Neuron, 35, 1019, 10.1016/S0896-6273(02)00906-6 Sutton, 2006, Dendritic protein synthesis, synaptic plasticity, and memory, Cell, 127, 49, 10.1016/j.cell.2006.09.014 Jin, 2004, Biochemical and genetic interaction between the fragile X mental retardation protein and the microRNA pathway, Nat. Neurosci., 7, 113, 10.1038/nn1174 Bagni, 2005, From mRNP trafficking to spine dysmorphogenesis: the roots of fragile X syndrome, Nat. Rev., Neurosci., 6, 376, 10.1038/nrn1667 Caudy, 2002, Fragile X-related protein and VIG associate with the RNA interference machinery, Genes Dev., 16, 2491, 10.1101/gad.1025202 Ishizuka, 2002, A Drosophila fragile X protein interacts with components of RNAi and ribosomal proteins, Genes Dev., 16, 2497, 10.1101/gad.1022002 Lugli, 2005, Dicer and eIF2c are enriched at postsynaptic densities in adult mouse brain and are modified by neuronal activity in a calpain-dependent manner, J. Neurochem., 94, 896, 10.1111/j.1471-4159.2005.03224.x Ashraf, 2006, Synaptic protein synthesis associated with memory is regulated by the RISC pathway in Drosophila, Cell, 124, 191, 10.1016/j.cell.2005.12.017 Schratt, 2006, A brain-specific microRNA regulates dendritic spine development, Nature, 439, 283, 10.1038/nature04367 Bhattacharyya, 2006, Relief of microRNA-mediated translational repression in human cells subjected to stress, Cell, 125, 1111, 10.1016/j.cell.2006.04.031 Schratt, 2004, BDNF regulates the translation of a select group of mRNAs by a mammalian target of rapamycin-phosphatidylinositol 3-kinase-dependent pathway during neuronal development, J. Neurosci., 24, 7366, 10.1523/JNEUROSCI.1739-04.2004 Kye, 2007, Somatodendritic microRNAs identified by laser capture and multiplex RT-PCR, RNA, 13, 1224, 10.1261/rna.480407 Vo, 2005, A cAMP-response element binding protein-induced microRNA regulates neuronal morphogenesis, Proc. Natl. Acad. Sci. U. S. A., 102, 16426, 10.1073/pnas.0508448102 Cheng, 2007, microRNA modulation of circadian-clock period and entrainment, Neuron, 54, 813, 10.1016/j.neuron.2007.05.017 Hengst, 2007, Function and translational regulation of mRNA in developing axons, Semin. Cell Dev. Biol., 18, 209, 10.1016/j.semcdb.2007.01.003 Hengst, 2006, Functional and selective RNA interference in developing axons and growth cones, J. Neurosci., 26, 5727, 10.1523/JNEUROSCI.5229-05.2006 Greco, 2007, MicroRNAs regulate synthesis of the neurotransmitter substance P in human mesenchymal stem cell-derived neuronal cells, Proc. Natl. Acad. Sci. U. S. A., 104, 15484, 10.1073/pnas.0703037104 Nelson, 2007, RNA in brain disease: no longer just “the messenger in the middle”, J. Neuropathol. Exp. Neurol., 66, 461, 10.1097/01.jnen.0000240474.27791.f3 Chen, 2006, Natural selection on human microRNA binding sites inferred from SNP data, Nat. Genet., 38, 1452, 10.1038/ng1910 Abelson, 2005, Sequence variants in SLITRK1 are associated with Tourette's syndrome, Science, 310, 317, 10.1126/science.1116502 Perkins, 2007, MicroRNA expression in the prefrontal cortex of individuals with schizophrenia and schizoaffective disorder, Genome Biol., 8, R27, 10.1186/gb-2007-8-2-r27 Hansen, 2007, Brain expressed microRNAs implicated in schizophrenia etiology, PLoS ONE, 2, e873, 10.1371/journal.pone.0000873 Bilen, 2006, MicroRNA pathways modulate polyglutamine-induced neurodegeneration, Mol. Cell, 24, 157, 10.1016/j.molcel.2006.07.030 Garzon, 2006, MicroRNA expression and function in cancer, Trends Mol. Med., 12, 580, 10.1016/j.molmed.2006.10.006 Ciafre, 2005, Extensive modulation of a set of microRNAs in primary glioblastoma, Biochem. Biophys. Res. Commun., 334, 1351, 10.1016/j.bbrc.2005.07.030 Chan, 2005, MicroRNA-21 is an antiapoptotic factor in human glioblastoma cells, Cancer Res., 65, 6029, 10.1158/0008-5472.CAN-05-0137 Sathyan, 2007, Competing interactions between micro-RNAs determine neural progenitor survival and proliferation after ethanol exposure: evidence from an ex vivo model of the fetal cerebral cortical neuroepithelium, J. Neurosci., 27, 8546, 10.1523/JNEUROSCI.1269-07.2007 Tsang, 2007, MicroRNA-mediated feedback and feedforward loops are recurrent network motifs in mammals, Mol. Cell, 26, 753, 10.1016/j.molcel.2007.05.018