Metaproteome analysis of the microbial communities in agricultural biogas plants
Tài liệu tham khảo
Weiland, 2006, Biomass digestion in agriculture: a successful pathway for the energy production and waste treatment in Germany, Engineering in Life Sciences, 6, 302, 10.1002/elsc.200620128
Chen, 2008, Inhibition of anaerobic digestion process: a review, Bioresource Technology, 99, 4044, 10.1016/j.biortech.2007.01.057
Amann, 1995, Phylogenetic identification and in-situ detection of individual microbial-cells without cultivation, Microbiological Reviews, 59, 143, 10.1128/mr.59.1.143-169.1995
Klocke, 2008, Characterization of the methanogenic Archaea within two-phase biogas reactor systems operated with plant biomass, Systematic and Applied Microbiology, 31, 190, 10.1016/j.syapm.2008.02.003
Nelson, 2011, A meta-analysis of the microbial diversity observed in anaerobic digesters, Bioresource Technology, 102, 3730, 10.1016/j.biortech.2010.11.119
Weiss, 2008, Diversity of the resident microbiota in a thermophilic municipal biogas plant, Applied Microbiology and Biotechnology, 81, 163, 10.1007/s00253-008-1717-6
Schlüter, 2008, The metagenome of a biogas-producing microbial community of a production-scale biogas plant fermenter analysed by the 454-pyrosequencing technology, Journal of Biotechnology, 136, 77, 10.1016/j.jbiotec.2008.05.008
Rademacher, 2012, Characterization of microbial biofilms in a thermophilic biogas system by high-throughput metagenome sequencing, FEMS Microbiology Ecology, 79, 785, 10.1111/j.1574-6941.2011.01265.x
Wilmes, 2006, Metaproteomics: studying functional gene expression in microbial ecosystems, Trends in Microbiology, 14, 92, 10.1016/j.tim.2005.12.006
Schneider, 2012, Who is who in litter decomposition? Metaproteomics reveals major microbial players and their biogeochemical functions, The ISME Journal, 6, 1749, 10.1038/ismej.2012.11
Kan, 2005, Metaproteomic analysis of Chesapeake Bay microbial communities, Saline Systems, 1, 7, 10.1186/1746-1448-1-7
Ram, 2005, Community proteomics of a natural microbial biofilm, Science, 308, 1915, 10.1126/science. 1109070
Benndorf, 2007, Functional metaproteome analysis of protein extracts from contaminated soil and groundwater, The ISME Journal, 1, 224, 10.1038/ismej.2007.39
Benndorf, 2009, Improving protein extraction and separation methods for investigating the metaproteome of anaerobic benzene communities within sediments, Biodegradation, 20, 737, 10.1007/s10532-009-9261-3
Abram, 2011, A metaproteomic approach gives functional insights into anaerobic digestion, Journal of Applied Microbiology, 110, 1550, 10.1111/j.1365-2672.2011.05011.x
Hanreich, 2012, Metaproteome analysis to determine the metabolically active part of a thermophilic microbial community producing biogas from agricultural biomass, Canadian Journal of Microbiology, 58, 917, 10.1139/w2012-058
Klose, 1975, Protein mapping by combined isoelectric focusing and electrophoresis of mouse tissues. A novel approach to testing for induced point mutations in mammals, Humangenetik, 26, 231, 10.1007/BF00281458
O’Farrell, 1975, High resolution two-dimensional electrophoresis of proteins, The Journal of Biological Chemistry, 250, 4007, 10.1016/S0021-9258(19)41496-8
Laemmli, 1970, Cleavage of structural proteins during the assembly of the head of bacteriophage T4, Nature, 227, 680, 10.1038/227680a0
Ehlers, 1999, Comparing the protein profiles of 21 different activated sludge systems after SDS–PAGE, Water Research, 33, 1181, 10.1016/S0043-1354(98)00312-1
Rieger, 2006, Prozessstörungen frühzeitig erkennen, Biogas Journal, 4, 18
Schweikl, 1989, A vacuolar-type ATPase, partially purified from potassium transporting plasma membranes of tobacco hornworm midgut, The Journal of Biological Chemistry, 264, 11136, 10.1016/S0021-9258(18)60440-5
Neuhoff, 1988, Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250, Electrophoresis, 9, 255, 10.1002/elps.1150090603
Shevchenko, 1996, Mass spectrometric sequencing of proteins silver-stained polyacrylamide gels, Analytical Chemistry, 68, 850, 10.1021/ac950914h
Sokal, 1958, A statistical method for evaluating systematic relationship, The University of Kansas Science Bulletin, 38, 1409
Perkins, 1999, Probability-based protein identification by searching sequence databases using mass spectrometry data, Electrophoresis, 20, 3551, 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2
Altschul, 1990, Basic local alignment search tool, Journal of Molecular Biology, 215, 403, 10.1016/S0022-2836(05)80360-2
Kuhn, 2011, Metaproteome analysis of sewage sludge from membrane bioreactors, Proteomics, 11, 2738, 10.1002/pmic.201000590
Shoham, 1999, The cellulosome concept as an efficient microbial strategy for the degradation of insoluble polysaccharides, Trends in Microbiology, 7, 275, 10.1016/S0966-842X(99)01533-4
Blum, 1987, Improved silver staining of plant proteins, RNA and DNA in polyacrylamide gels, Electrophoresis, 8, 93, 10.1002/elps.1150080203
Mackintosh, 2003, A fluorescent natural product for ultra sensitive detection of proteins in one-dimensional and two-dimensional gel electrophoresis, Proteomics, 3, 2273, 10.1002/pmic.200300578
Zhang, 2000, Digitization of DGGE (denaturing gradient gel electrophoresis) profile and cluster analysis of microbial communities, Biotechnology Letters, 22, 399, 10.1023/A:1005680803442
Pierre-Alain, 2007, Protein extraction and fingerprinting optimization of bacterial communities in natural environment, Microbial Ecology, 53, 426, 10.1007/s00248-006-9121-1
Uthayakumaran, 2005, On-the-spot identification of grain variety and wheat-quality type by Lab-on-a-chip capillary electrophoresis, Journal of Cereal Science, 41, 371, 10.1016/j.jcs.2004.12.001
Nettmann, 2010, Polyphasic analyses of methanogenic archaeal communities in agricultural biogas plants, Applied and Environmental Microbiology, 76, 2540, 10.1128/AEM.01423-09
Sauer, 1997, Methanol:coenzyme M methyltransferase from Methanosarcina barkeri. Purification, properties and encoding genes of the corrinoid protein MT1, European Journal of Biochemistry/FEBS, 243, 670, 10.1111/j.1432-1033.1997.t01-1-00670.x
Ferguson, 1997, Reconstitution of trimethylamine-dependent coenzyme M methylation with the trimethylamine corrinoid protein and the isozymes of methyltransferase II from Methanosarcina barkeri, Journal of Bacteriology, 179, 846, 10.1128/jb.179.3.846-852.1997
Liu, 2004, A model for random sampling and estimation of relative protein abundance in shotgun proteomics, Analytical Chemistry, 76, 4193, 10.1021/ac0498563
Paoletti, 2006, Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors, Proceedings of the National Academy of Sciences of the United States of America, 103, 18928, 10.1073/pnas.0606379103
Munk, 2010, Population dynamics of methanogens during acidification of biogas fermenters fed with maize silage, Engineering in Life Sciences, 10, 496, 10.1002/elsc.201000056
Blume, 2010, Methanogenic population dynamics during semi-continuous biogas fermentation and acidification by overloading, Journal of Applied Microbiology, 109, 441, 10.1111/j.1365-2672.2010.04682.x