Metabolomics as an emerging tool to study plant–microbe interactions
Tóm tắt
Từ khóa
Tài liệu tham khảo
2001, Combining genomics, metabolome analysis, and biochemical modelling to understand metabolic networks, Comp. Funct. Genom., 2, 155, 10.1002/cfg.82
1998, Systematic functional analysis of the yeast genome, Trends Biotechnol., 16, 373, 10.1016/S0167-7799(98)01214-1
2019, Advances of metabolomics in fungal pathogen–plant interactions, Metabolites, 9, 169, 10.3390/metabo9080169
2021, Plant-Microbe Dynamics: Recent Advances for Sustainable Agriculture, 201
2021, Plant-Microbe Dynamics: Recent Advances for Sustainable Agriculture
2012, Plant growth-promoting bacteria: mechanisms and applications, Scientifica, 2012, 963401, 10.6064/2012/963401
2016, Friends or foes? Emerging insights from fungal interactions with plants, FEMS Microbiol. Rev., 40, 182, 10.1093/femsre/fuv045
2020, Current perspectives and applications in plant probiotics, Microbiology, 41, 95, 10.1071/MA20024
2012, Metabolic and transcriptomic changes induced in Arabidopsis by the rhizobacterium pseudomonas fluorescens SS101, Plant Physiol., 60, 2173, 10.1104/pp.112.207324
2016, Recent developments in sample preparation and data pre-treatment in metabonomics research, Arch. Biochem., 589, 4, 10.1016/j.abb.2015.08.024
2018, Feed your friends: do plant exudates shape the root microbiome?, Trends Plant Sci., 23, 25, 10.1016/j.tplants.2017.09.003
2014, Effects of different plant root exudates and their organic acid components on chemotaxis, biofilm formation and colonization by beneficial rhizosphere-associated bacterial strains, Plant Soil., 374, 689, 10.1007/s11104-013-1915-6
2020, Deciphering the omics of plant-microbe interaction: perspectives and new insights, Curr. Genom., 21, 343, 10.2174/1389202921999200515140420
2016, Metabolomics in the rhizosphere: tapping into belowground chemical communication, Trends Plant Sci., 21, 256, 10.1016/j.tplants.2016.01.008
2018, Dynamic root exudate chemistry and microbial substrate preferences drive patterns in rhizosphere microbial community assembly, Nat. Microbiol., 3, 470, 10.1038/s41564-018-0129-3
2018, The chemistry of plant–microbe interactions in the rhizosphere and the potential for metabolomics to reveal signaling related to defense priming and induced systemic resistance, Front. Plant Sci., 9, 112, 10.3389/fpls.2018.00112
2018, Identification of lipid markers of Plasmopara viticola infection in grapevine using a non-targeted metabolomic approach, Front. Plant Sci., 9, 360, 10.3389/fpls.2018.00360
2013, Plant secondary metabolite profiling evidences strain-dependent effect in the Azospirillum–Oryza sativa association, Phytochemistry, 87, 65, 10.1016/j.phytochem.2012.11.009
2011, Host plant secondary metabolite profiling shows a complex, strain-dependent response of maize to plant growth-promoting rhizobacteria of the genus Azospirillum, New Phytol., 189, 494, 10.1111/j.1469-8137.2010.03484.x
2017, Metabolic profiling of two maize (Zea mays L.) inbred lines inoculated with the nitrogen fixing plant-interacting bacteria Herbaspirillum seropedicae and Azospirillum brasilense, PLoS ONE, 12, e0174576, 10.1371/journal.pone.0174576
2014, Interactions between the jasmonic and salicylic acid pathway modulate the plant metabolome and affect herbivores of different feeding types, Plant Cell Environ., 37, 1574, 10.1111/pce.12257
2014, Combining metabolomics and gene expression analysis reveals that propionyl-and butyryl-carnitines are involved in late stages of arbuscular mycorrhizal symbiosis, Mol. Plant, 7, 554, 10.1093/mp/sst136
2020, A common metabolomic signature is observed upon inoculation of rice roots with various rhizobacteria, J. Integr. Plant Biol., 62, 228, 10.1111/jipb.12810
2020, Metabolic profiling of PGPR-treated tomato plants reveal priming-related adaptations of secondary metabolites and aromatic amino acids, Metabolites, 10, 210, 10.3390/metabo10050210
2013, MALDI mass spectrometry-assisted molecular imaging of metabolites during nitrogen fixation in the Medicago truncatula–Sinorhizobium meliloti symbiosis, Plant J., 75, 130, 10.1111/tpj.12191
2013, Imaging mass spectrometry of a coral microbe interaction with fungi, J. Chem. Ecol., 39, 1045, 10.1007/s10886-013-0320-1
2013, Characterization of fungal antagonistic bacilli isolated from aerial roots of banyan (Ficus benghalensis) using intact-cell MALDI-TOF mass spectrometry (ICMS), J. Appl. Microbiol., 114, 1300, 10.1111/jam.12161
2014, Spatiotemporal monitoring of the antibiome secreted by Bacillus biofilms on plant roots using MALDI mass spectrometry imaging, Anal. Chem., 86, 4431, 10.1021/ac500290s
2008, Advanced data-mining strategies for the analysis of direct-infusion ion trap mass spectrometry data from the association of perennial ryegrass with its endophytic fungus, Neotyphodium lolii, Plant Physiol., 146, 1501, 10.1104/pp.107.112458
2012, Endophytic fungi produce gibberellins and indoleacetic acid and promotes host-plant growth during stress, Molecules, 17, 10754, 10.3390/molecules170910754
2017, Metabolic profiling and identification of shikonins in root periderm of two invasive echium spp. weeds in Australia, Molecules, 22, 330, 10.3390/molecules22020330
2021, Advances in the study of metabolomics and metabolites in some species interactions, Molecules, 26, 3311, 10.3390/molecules26113311
2020, Metabolomic responses of maize shoots and roots elicited by combinatorial seed treatments with microbial and non-microbial biostimulants, Front. Microbiol., 11, 664, 10.3389/fmicb.2020.00664
2020, Metabolomics meets lipidomics: assessing the small molecule component of metabolism, Bioassays, 42, 2000052, 10.1002/bies.202000052
2016, Metabolomics: beyond biomarkers and towards mechanisms, Nat. Rev. Mol., 17, 451, 10.1038/nrm.2016.25
2021, The metabolic response of brachypodium roots to the interaction with beneficial bacteria is affected by the plant nutritional status, Metabolites, 11, 358, 10.3390/metabo11060358
2021, Inoculation of barley with Trichoderma harzianum T-22 modifies lipids and metabolites to improve salt tolerance, J. Exp. Bot., 72, 7229, 10.1093/jxb/erab335
2015, Getting the right answers: understanding metabolomics challenges, Expert Rev. Mol. Diagn., 15, 97, 10.1586/14737159.2015.974562
2005, Metabolic footprinting and systems biology: the medium is the message, Nat. Rev. Microbiol., 3, 557, 10.1038/nrmicro1177
2011, Biology of Plant Metabolomics, 1
2013, The challenges of cellular compartmentalization in plant metabolic engineering, Curr. Opin. Biotechnol., 24, 239, 10.1016/j.copbio.2012.11.006
2021, Modulators or facilitators? Roles of lipids in plant root–microbe interactions, Trends Plant Sci., 27, 180, 10.1016/j.tplants.2021.08.004
2015, The hidden world within plants: ecological and evolutionary considerations for defining functioning of microbial endophytes, Microbiol. Mol. Biol. Rev., 79, 293, 10.1128/MMBR.00050-14
2015, Plants and endophytes: equal partners in secondary metabolite production?, Biotechnol. Lett., 37, 1325, 10.1007/s10529-015-1814-4
2015, An untargeted global metabolomic analysis reveals the biochemical changes underlying basal resistance and priming in Solanum lycopersicum, and identifies 1-methyltryptophan as a metabolite involved in plant responses to Botrytis cinerea and Pseudomonas syringae, Plant J., 84, 125, 10.1111/tpj.12964
2015, Comparative metabolomic analysis highlights the involvement of sugars and glycerol in melatonin-mediated innate immunity against bacterial pathogen in Arabidopsis, Sci. Rep., 5, 15815, 10.1038/srep15815
2016, Metabolomic study of two rice lines infected by Rhizoctonia solani in negative ion mode by CE/TOF-MS, J. Plant Physiol., 206, 13, 10.1016/j.jplph.2016.09.004
2017, Metabolomic study of chardonnay grapevines double stressed with esca-associated fungi and drought, Phytopathology, 107, 669, 10.1094/PHYTO-11-16-0410-R
2013, Isotopic labelingassisted metabolomics using LC-MS, Anal. Bioanal. Chem., 405, 27, 10.1007/s00216-012-6375-y
2014, Stable isotope-labeling studies in metabolomics: new insights into structure and dynamics of metabolic networks, Bioanalysis, 6, 511, 10.4155/bio.13.348
2014, Application of stable isotope-assisted metabolomics for cell metabolism studies, Metabolites, 4, 142, 10.3390/metabo4020142
2016, Can stable isotope mass spectrometry replace radiolabelled approaches in metabolic studies?, Plant Sci., 249, 59, 10.1016/j.plantsci.2016.05.011
2018, Metabolomics of early stage plant cell–microbe interaction using stable isotope labeling, Front. Plant Sci., 9, 760, 10.3389/fpls.2018.00760
2020, A non-invasive soil-based setup to study tomato root volatiles released by healthy and infected roots, Sci. Rep., 10, 1, 10.1038/s41598-020-69468-z
2018, Subcellular distribution and biotransformation of phenanthrene in pakchoi after inoculation with endophytic Pseudomonas sp. as probed using HRMS coupled with isotope-labeling, Environ. Pollut., 237, 858, 10.1016/j.envpol.2017.11.039