Metabolic engineering for advanced biofuels production from Escherichia coli

Kalscheuer, 2006, Microdiesel: Escherichia coli engineered for fuel production, Microbiology, 152, 2529, 10.1099/mic.0.29028-0 Hanai, 2007, Engineered synthetic pathway for isopropanol production in Escherichia coli, Appl Environ Microbiol, 73, 7814, 10.1128/AEM.01140-07 Withers, 2007, Identification of isopentenol biosynthetic genes from Bacillus subtilis by a screening method based on isoprenoid precursor toxicity, Appl Environ Microbiol, 73, 6277, 10.1128/AEM.00861-07 Atsumi, 2008, Non-fermentative pathways for synthesis of branched-chain higher alcohols as biofuels, Nature, 451, 86, 10.1038/nature06450 Atsumi, 2008, Metabolic engineering of Escherichia coli for 1-butanol production, Metab Eng, 10.1016/j.ymben.2007.08.003 Lin, 1983, Butanol production by a butanol-tolerant strain of Clostridium acetobutylicum in extruded corn broth, Appl Environ Microbiol, 45, 966, 10.1128/AEM.45.3.966-973.1983 Jones, 1986, Acetone–butanol fermentation revisited, Microbiol Rev, 50, 484, 10.1128/MMBR.50.4.484-524.1986 Osburn, 1937, The butyl alcohol–isopropyl alcohol fermentation, J Biol Chem, 121, 685, 10.1016/S0021-9258(18)74298-1 Chen, 1986, Acetone–butanol–isopropanol production by Clostridium beijerinckii (synonym, Clostridium butylicum), Biotechnol Lett, 8, 371, 10.1007/BF01040869 Bermejo, 1998, Expression of Clostridium acetobutylicum ATCC 824 genes in Escherichia coli for acetone production and acetate detoxification, Appl Environ Microbiol, 64, 1079, 10.1128/AEM.64.3.1079-1085.1998 Peretz, 1997, Molecular cloning, nucleotide sequencing, and expression of genes encoding alcohol dehydrogenases from the thermophile Thermoanaerobacter brockii and the mesophile Clostridium beijerinckii, Anaerobe, 3, 259, 10.1006/anae.1997.0083 Duncombe, 1976, Molecular and catalytic properties of the acetoacetyl-coenzyme A thiolase of Escherichia coli, Arch Biochem Biophys, 176, 159, 10.1016/0003-9861(76)90152-1 Jenkins, 1987, Genetic and molecular characterization of the genes involved in short-chain fatty acid degradation in Escherichia coli: the ato system, J Bacteriol, 169, 42, 10.1128/jb.169.1.42-52.1987 Ismaiel, 1993, Purification and characterization of a primary–secondary alcohol dehydrogenase from two strains of Clostridium beijerinckii, J Bacteriol, 175, 5097, 10.1128/jb.175.16.5097-5105.1993 Lamed, 1981, Novel NADP-linked alcohol–aldehyde/ketone oxidoreductase in thermophilic ethanologenic bacteria, Biochem J, 195, 183, 10.1042/bj1950183 Boynton, 1996, Cloning, sequencing, and expression of genes encoding phosphotransacetylase and acetate kinase from Clostridium acetobutylicum ATCC 824, Appl Environ Microbiol, 62, 2758, 10.1128/AEM.62.8.2758-2766.1996 Fontaine, 2002, Molecular characterization and transcriptional analysis of adhE2, the gene encoding the NADH-dependent aldehyde/alcohol dehydrogenase responsible for butanol production in alcohologenic cultures of Clostridium acetobutylicum ATCC 824, J Bacteriol, 184, 821, 10.1128/JB.184.3.821-830.2002 Wiesenborn, 1988, Thiolase from Clostridium acetobutylicum ATCC 824 and its role in the synthesis of acids and solvents, Appl Environ Microbiol, 54, 2717, 10.1128/AEM.54.11.2717-2722.1988 Becker, 1993, Characterization of wild-type and an active-site mutant in Escherichia coli of short-chain acyl-CoA dehydrogenase from Megasphaera elsdenii, Biochemistry, 32, 10736, 10.1021/bi00091a026 O’Neill, 1998, Cloning and analysis of the genes for a novel electron-transferring flavoprotein from Megasphaera elsdenii. Expression and characterization of the recombinant protein, J Biol Chem, 273, 21015, 10.1074/jbc.273.33.21015 Wallace, 1995, Purification of crotonyl-CoA reductase from Streptomyces collinus and cloning, sequencing and expression of the corresponding gene in Escherichia coli, Eur J Biochem, 233, 954, 10.1111/j.1432-1033.1995.954_3.x Sentheshanuganathan, 1960, The mechanism of the formation of higher alcohols from amino acids by Saccharomyces cerevisiae, Biochem J, 74, 568, 10.1042/bj0740568 de la Plaza, 2004, Biochemical and molecular characterization of alpha-ketoisovalerate decarboxylase, an enzyme involved in the formation of aldehydes from amino acids by Lactococcus lactis, FEMS Microbiol Lett, 238, 367 Kisumi, 1976, Biosynthesis of norvaline, norleucine, and homoisoleucine in Serratia marcescens, J Biochem, 80, 333, 10.1093/oxfordjournals.jbchem.a131281 Miwa, 1983, Construction of l-threonine overproducing strains of Escherichia coli K-12 using recombinant, Agric Biol Chem, 47, 2329, 10.1271/bbb1961.47.2329 Vaneechoutte, 2006, Naturally transformable Acinetobacter sp. strain ADP1 belongs to the newly described species Acinetobacter baylyi, Appl Environ Microbiol, 72, 932, 10.1128/AEM.72.1.932-936.2006 Sacchettini, 1997, Creating isoprenoid diversity, Science, 277, 1788, 10.1126/science.277.5333.1788