Merging theory and experiments to predict and understand coextinctions

Ives, 2007, Stability and diversity of ecosystems, Science, 317, 58, 10.1126/science.1133258 Sala, 2000, Global biodiversity scenarios for the year 2100, Science, 287, 1770, 10.1126/science.287.5459.1770 Chapin, 2000, Consequences of changing biodiversity, Nature, 405, 234, 10.1038/35012241 Strona, 2022 Strona, 2015, Past, present and future of host–parasite co-extinctions, Int. J. Parasitol. Parasites Wildl., 4, 431, 10.1016/j.ijppaw.2015.08.007 Farrell, 2015, The path to host extinction can lead to loss of generalist parasites, J. Anim. Ecol., 84, 978, 10.1111/1365-2656.12342 Herrera, 2021, Predictions of primate–parasite coextinction, Philos. Trans. R. Soc. B Biol. Sci., 376, 10.1098/rstb.2020.0355 Dunne, 2002, Network structure and biodiversity loss in food webs: robustness increases with connectance, Ecol. Lett., 5, 558, 10.1046/j.1461-0248.2002.00354.x Silliman, 2005, Drought, snails, and large-scale die-off of southern U.S. salt marshes, Sci. New Ser., 310, 1803 Angelini, 2015, Foundation species’ overlap enhances biodiversity and multifunctionality from the patch to landscape scale in southeastern United States salt marshes, Proc. R. Soc. B Biol. Sci., 282 Cahill, 2013, How does climate change cause extinction?, Proc. R. Soc. B Biol. Sci., 280 Dobson, 2009, The assembly, collapse and restoration of food webs, Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci., 364, 1803, 10.1098/rstb.2009.0002 Dunne, 2009, Cascading extinctions and community collapse in model food webs, Philos. Trans. R. Soc. B Biol. Sci., 364, 1711, 10.1098/rstb.2008.0219 Estes, 2011, Trophic downgrading of planet Earth, Science, 333, 301, 10.1126/science.1205106 Ripple, 2016, What is a trophic cascade?, Trends Ecol. Evol., 31, 842, 10.1016/j.tree.2016.08.010 Young, 2016, Patterns, causes, and consequences of Anthropocene defaunation, Annu. Rev. Ecol. Evol. Syst., 47, 333, 10.1146/annurev-ecolsys-112414-054142 Terborgh, 2001, Ecological meltdown in predator-free forest fragments, Science, 294, 1923, 10.1126/science.1064397 Atkins, 2019, Cascading impacts of large-carnivore extirpation in an African ecosystem, Science, 364, 173, 10.1126/science.aau3561 Ripple, 2012, Trophic cascades in Yellowstone: the first 15 years after wolf reintroduction, Biol. Conserv., 145, 205, 10.1016/j.biocon.2011.11.005 Allesina, 2009, Functional links and robustness in food webs, Philos. Trans. R. Soc. B Biol. Sci., 364, 1701, 10.1098/rstb.2008.0214 Bellingeri, 2013, Threshold extinction in food webs, Theor. Ecol., 6, 143, 10.1007/s12080-012-0166-0 Bellingeri, 2013, Robustness of empirical food webs with varying consumer’s sensitivities to loss of resources, J. Theor. Biol., 333, 18, 10.1016/j.jtbi.2013.04.033 Curtsdotter, 2011, Robustness to secondary extinctions: comparing trait-based sequential deletions in static and dynamic food webs, Basic Appl. Ecol., 12, 571, 10.1016/j.baae.2011.09.008 Bastazini, 2018, Loss of generalist plant species and functional diversity decreases the robustness of a seed dispersal network, Environ. Conserv., 46, 52, 10.1017/S0376892918000334 Kaiser-Bunbury, 2010, The robustness of pollination networks to the loss of species and interactions: a quantitative approach incorporating pollinator behaviour, Ecol. Lett., 13, 442, 10.1111/j.1461-0248.2009.01437.x Astegiano, 2015, The robustness of plant–pollinator assemblages: linking plant interaction patterns and sensitivity to pollinator loss, PLoS ONE, 10, 10.1371/journal.pone.0117243 Graham, 2004, Effects of local deforestation on the diversity and structure of southern California giant kelp forest webs, Ecosystems, 7, 341, 10.1007/s10021-003-0245-6 Brook, 2003, Catastrophic extinctions follow deforestation in Singapore, Nature, 424, 420, 10.1038/nature01795 Spencer, 1991, Shrimp stocking, salmon collapse, and eagle displacement: cascading interactions in the food web of a large aquatic ecosystem, BioScience, 41, 14, 10.2307/1311536 Williams, 2008, Success and its limits among structural models of complex food webs, J. Anim. Ecol., 77, 512, 10.1111/j.1365-2656.2008.01362.x Ramos-Robles, 2018, Modularity and robustness of a plant-frugivore interaction network in a disturbed tropical forest, Écoscience, 25, 209, 10.1080/11956860.2018.1446284 Biella, 2020, An empirical attack tolerance test alters the structure and species richness of plant–pollinator networks, Funct. Ecol., 34, 2246, 10.1111/1365-2435.13642 Sanders, 2018, Trophic redundancy reduces vulnerability to extinction cascades, Proc. Natl. Acad. Sci. U. S. A., 115, 2419, 10.1073/pnas.1716825115 Timóteo, 2016, High resilience of seed dispersal webs highlighted by the experimental removal of the dominant disperser, Curr. Biol., 26, 910, 10.1016/j.cub.2016.01.046 Bodini, 2009, Using food web dominator trees to catch secondary extinctions in action, Philos. Trans. R. Soc. Lond. B Biol. Sci., 364, 1725, 10.1098/rstb.2008.0278 Pearse, 2013, Extinction cascades partially estimate herbivore losses in a complete Lepidoptera–plant food web, Ecology, 94, 1785, 10.1890/12-1075.1 Abernethy, 2019, The robustness, link-species relationship and network properties of model food webs, Commun. Nonlinear Sci. Numer. Simul., 70, 20, 10.1016/j.cnsns.2018.09.002 Burgos, 2007, Why nestedness in mutualistic networks?, J. Theor. Biol., 249, 307, 10.1016/j.jtbi.2007.07.030 Sheykhali, 2020, Robustness to extinction and plasticity derived from mutualistic bipartite ecological networks, Sci. Rep., 10, 9783, 10.1038/s41598-020-66131-5 Fortuna, 2010, Nestedness versus modularity in ecological networks: two sides of the same coin?, J. Anim. Ecol., 79, 811, 10.1111/j.1365-2656.2010.01688.x Canning, 2018, Relative ascendency predicts food web robustness, Ecol. Res., 33, 873, 10.1007/s11284-018-1585-1 Goldstein, 2016, What if we lose a hub? Experimental testing of pollination network resilience to removal of keystone floral resources, Arthropod Plant Interact., 10, 263, 10.1007/s11829-016-9431-2 Brosi, 2017, Experimental species removals impact the architecture of pollination networks, Biol. Lett., 13, 10.1098/rsbl.2017.0243 Xi, 2020, Experimental reduction of plant abundance changes interaction frequency of a tri-trophic micro-food web: contrasting responses of generalists and specialists, J. Ecol., 108, 415, 10.1111/1365-2745.13270 Firkowski, 2022, Multi-trophic metacommunity interactions mediate asynchrony and stability in fluctuating environments, Ecol. Monogr., 92, 10.1002/ecm.1484 Borrvall, 2006, Early onset of secondary extinctions in ecological communities following the loss of top predators, Ecol. Lett., 9, 435, 10.1111/j.1461-0248.2006.00893.x Ovaskainen, 2001, Spatially structured metapopulation models: global and local assessment of metapopulation capacity, Theor. Popn. Biol., 60, 281, 10.1006/tpbi.2001.1548 Gilarranz, 2017, Effects of network modularity on the spread of perturbation impact in experimental metapopulations, Science, 357, 199, 10.1126/science.aal4122 Dallas, 2021, Exploring the dimensions of metapopulation persistence: a comparison of structural and temporal measures, Theor. Ecol., 14, 269, 10.1007/s12080-020-00497-0 Liao, 2022, A patch-dynamic metacommunity perspective on the persistence of mutualistic and antagonistic bipartite networks, Ecology, 103, 10.1002/ecy.3686 Liao, 2020, Metacommunity robustness of plant–fly–wasp tripartite networks with specialization to habitat loss, Ecology, 101, 10.1002/ecy.3071 Landi, 2018, Complexity and stability of ecological networks: a review of the theory, Popul. Ecol., 60, 319, 10.1007/s10144-018-0628-3 Riede, 2011, Size-based food web characteristics govern the response to species extinctions, Basic Appl. Ecol., 12, 581, 10.1016/j.baae.2011.09.006 Gilbert, 2009, Connectance indicates the robustness of food webs when subjected to species loss, Ecol. Indic., 9, 72, 10.1016/j.ecolind.2008.01.010 Barbosa, 2017, Experimentally reducing species abundance indirectly affects food web structure and robustness, J. Anim. Ecol., 86, 327, 10.1111/1365-2656.12626 Costa, 2018, Rewiring of experimentally disturbed seed dispersal networks might lead to unexpected network configurations, Basic Appl. Ecol., 30, 11, 10.1016/j.baae.2018.05.011 Burkle, 2013, Plant–pollinator interactions over 120 years: loss of species, co-occurrence, and function, Science, 339, 1611, 10.1126/science.1232728 Yeakel, 2014, Collapse of an ecological network in Ancient Egypt, Proc. Natl. Acad. Sci. U. S. A., 111, 14472, 10.1073/pnas.1408471111 Schleuning, 2016, Ecological networks are more sensitive to plant than to animal extinction under climate change, Nat. Commun., 7, 13965, 10.1038/ncomms13965 Allesina, 2006, Secondary extinctions in ecological networks: bottlenecks unveiled, Ecol. Model., 194, 150, 10.1016/j.ecolmodel.2005.10.016 Allesina, 2004, Who dominates whom in the ecosystem? Energy flow bottlenecks and cascading extinctions, J. Theor. Biol., 230, 351, 10.1016/j.jtbi.2004.05.009 Ebenman, 2005, Using community viability analysis to identify fragile systems and keystone species, Trends Ecol. Evol., 20, 568, 10.1016/j.tree.2005.06.011 Eklöf, 2006, Species loss and secondary extinctions in simple and complex model communities, J. Anim. Ecol., 75, 239, 10.1111/j.1365-2656.2006.01041.x Jacob, 2011, The role of body size in complex food webs, Adv. Ecol. Res., 45, 181, 10.1016/B978-0-12-386475-8.00005-8 Quince, 2005, Deleting species from model food webs, Oikos, 110, 283, 10.1111/j.0030-1299.2005.13493.x Solé, 2001, Complexity and fragility in ecological networks, Proc. R. Soc. Lond. B Biol. Sci., 268, 2039, 10.1098/rspb.2001.1767 Memmott, 2004, Tolerance of pollination networks to species extinctions, Proc. R. Soc. Lond. B Biol. Sci., 271, 2605, 10.1098/rspb.2004.2909 Saavedra, 2011, Strong contributors to network persistence are the most vulnerable to extinction, Nature, 478, 233, 10.1038/nature10433 Olesen, 2007, The modularity of pollination networks, Proc. Natl. Acad. Sci. U. S. A., 104, 19891, 10.1073/pnas.0706375104 de Visser, 2011, The Serengeti food web: empirical quantification and analysis of topological changes under increasing human impact: topological changes under human impact, J. Anim. Ecol., 80, 484, 10.1111/j.1365-2656.2010.01787.x Mérillet, 2022, Effects of life-history traits and network topological characteristics on the robustness of marine food webs, Glob. Ecol. Conserv., 34 Costa Vieira, 2015, A simple stochastic model for complex coextinctions in mutualistic networks: robustness decreases with connectance, Ecol. Lett., 18, 144, 10.1111/ele.12394 Ives, 2004, Food-web interactions govern the resistance of communities after non-random extinctions, Nature, 429, 174, 10.1038/nature02515 Srinivasan, 2007, Response of complex food webs to realistic extinction sequences, Ecology, 88, 671, 10.1890/06-0971 Winfree, 2014, Species abundance, not diet breadth, drives the persistence of the most linked pollinators as plant–pollinator networks disassemble, Am. Nat., 183, 600, 10.1086/675716 Strona, 2013, Fish parasites resolve the paradox of missing coextinctions, Nat. Commun., 4, 1718, 10.1038/ncomms2723 Neff, 2021, Changes in plant-herbivore network structure and robustness along land-use intensity gradients in grasslands and forests, Sci. Adv., 7, 10.1126/sciadv.abf3985 Ramos-Jiliberto, 2012, Topological plasticity increases robustness of mutualistic networks, J. Anim. Ecol., 81, 896, 10.1111/j.1365-2656.2012.01960.x Valdovinos, 2013, Adaptive foraging allows the maintenance of biodiversity of pollination networks, Oikos, 122, 907, 10.1111/j.1600-0706.2012.20830.x Vizentin-Bugoni, 2020, Including rewiring in the estimation of the robustness of mutualistic networks, Methods Ecol. Evol., 11, 106, 10.1111/2041-210X.13306 Staniczenko, 2010, Structural dynamics and robustness of food webs, Ecol. Lett., 13, 891, 10.1111/j.1461-0248.2010.01485.x Thierry, 2011, Adaptive foraging and the rewiring of size-structured food webs following extinctions, Basic Appl. Ecol., 12, 562, 10.1016/j.baae.2011.09.005 Gilljam, 2015, Adaptive rewiring aggravates the effects of species loss in ecosystems, Nat. Commun., 6, 8412, 10.1038/ncomms9412 Bain, 2021, The effects of experimental floral resource removal on plant–pollinator interactions, bioRxiv Säterberg, 2013, High frequency of functional extinctions in ecological networks, Nature, 499, 468, 10.1038/nature12277 Marjakangas, 2020, Fragmented tropical forests lose mutualistic plant–animal interactions, Divers. Distrib., 26, 154, 10.1111/ddi.13010 Murillo Pacheco, 2018, Food web associations and effect of trophic resources and environmental factors on parasitoids expanding their host range into non-native hosts, Entomol. Exp. Appl., 166, 277, 10.1111/eea.12674 Keyes, 2021, An ecological network approach to predict ecosystem service vulnerability to species losses, Nat. Commun., 12, 1586, 10.1038/s41467-021-21824-x Girardot, 2020, Does evolution design robust food webs?, Proc. R. Soc. B Biol. Sci., 287 Stouffer, 2011, Compartmentalization increases food-web persistence, Proc. Natl. Acad. Sci. U. S. A., 108, 3648, 10.1073/pnas.1014353108 Yen, 2016, Linking structure and function in food webs: maximization of different ecological functions generates distinct food web structures, J. Anim. Ecol., 85, 537, 10.1111/1365-2656.12484 Kim, 2013, An experimental evaluation of robustness of networks, IEEE Syst. J., 7, 179, 10.1109/JSYST.2012.2221851 Nuwagaba, 2017, Robustness of rigid and adaptive networks to species losses, PLoS ONE, 12, 10.1371/journal.pone.0189086 Bane, 2018, Effects of model choice, network structure, and interaction strengths on knockout extinction models of ecological robustness, Ecol. Evol., 8, 10794, 10.1002/ece3.4529 Zhao, 2019, Horizontal and vertical diversity jointly shape food web stability against small and large perturbations, Ecol. Lett., 22, 1152, 10.1111/ele.13282 Borrvall, 2000, Biodiversity lessens the risk of cascading extinction in model food webs, Ecol. Lett., 3, 131, 10.1046/j.1461-0248.2000.00130.x Mougi, 2016, Food-web complexity, meta-community complexity and community stability, Sci. Rep., 6, 24478, 10.1038/srep24478 Eklöf, 2013, The dimensionality of ecological networks, Ecol. Lett., 16, 577, 10.1111/ele.12081 Gross, 2005, The functional consequences of random vs. ordered species extinctions, Ecol. Lett., 8, 409, 10.1111/j.1461-0248.2005.00733.x Donoso, 2020, Downsizing of animal communities triggers stronger functional than structural decay in seed-dispersal networks, Nat. Commun., 11, 1582, 10.1038/s41467-020-15438-y Montoya, 2015, Functional group diversity increases with modularity in complex food webs, Nat. Commun., 6, 7379, 10.1038/ncomms8379 Gaiarsa, 2019, Interaction strength promotes robustness against cascading effects in mutualistic networks, Sci. Rep., 9, 676, 10.1038/s41598-018-35803-8 Monteiro, 2018, Resource depletion and mechanisms for food web robustness in a Neotropical estuary, Mar. Freshw. Res., 69, 1755, 10.1071/MF17141 Baumgartner, 2022, The sensitivity of complex dynamic food webs to the loss of top omnivores, J. Theor. Biol., 538, 10.1016/j.jtbi.2022.111027 Fontaine, 2011, The ecological and evolutionary implications of merging different types of networks, Ecol. Lett., 14, 1170, 10.1111/j.1461-0248.2011.01688.x Estrada, 2007, Food webs robustness to biodiversity loss: the roles of connectance, expansibility and degree distribution, J. Theor. Biol., 244, 296, 10.1016/j.jtbi.2006.08.002 Lafferty, 2009, Parasites reduce food web robustness because they are sensitive to secondary extinction as illustrated by an invasive estuarine snail, Philos. Trans. R. Soc. Lond. Ser. B Biol. Sci., 364, 1659, 10.1098/rstb.2008.0220 Bellay, 2020, Ectoparasites are more vulnerable to host extinction than co-occurring endoparasites: evidence from metazoan parasites of freshwater and marine fishes, Hydrobiologia, 847, 2873, 10.1007/s10750-020-04279-x Amundsen, 2013, New parasites and predators follow the introduction of two fish species to a subarctic lake: implications for food-web structure and functioning, Oecologia, 171, 993, 10.1007/s00442-012-2461-2 Santamaría, 2014, Robustness of alpine pollination networks: effects of network structure and consequences for endemic plants, Inst. Arct. Alp. Res., 46, 568, 10.1657/1938-4246-46.3.568 Lu, 2016, Drought rewires the cores of food webs, Nat. Clim. Chang., 6, 875, 10.1038/nclimate3002 R Core Team, 2019