Membrane protein assembly in vivo
Tài liệu tham khảo
Andersson, 1993, Sec-dependent and Sec-independent assembly of E. coli inner membrane proteins—the topological rules depend on chain length, EMBO J, 12, 683, 10.1002/j.1460-2075.1993.tb05702.x
Andersson, 1994, Membrane protein topology: effects of ΔμH+ on the translocation of charged residues explain the “positive inside” rule, EMBO J., 13, 2267, 10.1002/j.1460-2075.1994.tb06508.x
Beck, 2001, Yid, an assembly site for polytopic Escherichia coli membrane proteins located in immediate proximity to the SecYE translocon and lipids, EMBO Rep., 2, 709, 10.1093/embo-reports/kve154
Beckmann, 2001, Architecture of the protein-conducting channel associated with the translating SOS ribosome, Cell, 107, 361, 10.1016/S0092-8674(01)00541-4
Berks, 2000, The Tat protein export pathway, Mol. Microbiol., 35, 260, 10.1046/j.1365-2958.2000.01719.x
Borel, 1996, Biogenesis of polytopic membrane proteins: membrane segments assemble with translocation channels prior to membrane integration, Cell, 85, 379, 10.1016/S0092-8674(00)81116-2
Borel, 1996, Biogenesis of polytopic membrane proteins: membrane segments of P-glycoprotein sequentially translocate to span the ER membrane, Biochemistry, 35, 10587, 10.1021/bi960950q
Dalbey, 1999, Protein translocation into and across the bacterial plasma membrane and the plant thylakoid membrane, Trends Biochem. Sci., 24, 17, 10.1016/S0968-0004(98)01333-4
2002
de Cock, 1999, Affinity of the periplasmic chaperone Skp of Escherichia coli for phospholipids, lipopolysaccharides and non-native outer membrane proteins—role of Skp in the biogenesis of outer membrane protein, Eur. J. Biochem., 259, 96, 10.1046/j.1432-1327.1999.00010.x
de Gier, 2001, Biogenesis of inner membrane proteins in Escherichia coli, Mol. Microbiol., 40, 314, 10.1046/j.1365-2958.2001.02392.x
Denzer, 1995, Transmembrane orientation of signalanchor proteins is affected by the folding state but not the size of the N-terminal domain, EMBO J, 14, 6311, 10.1002/j.1460-2075.1995.tb00321.x
Do, 1996, The cotranslational integration of membrane proteins into the phospholipid bilayer is a multistep process, Cell, 85, 369, 10.1016/S0092-8674(00)81115-0
Engelman, 1981, The spontaneous insertion of proteins into and across membranes: the helical hairpin hypothesis, Cell, 23, 411, 10.1016/0092-8674(81)90136-7
Fujiki, 2000, Peroxisome biogenesis and peroxisome biogenesis disorders, FEBS Lett., 476, 42, 10.1016/S0014-5793(00)01667-7
Gafvelin, 1994, Topological “frustration” in multi-spanning E. coli inner membrane proteins, Cell, 77, 401, 10.1016/0092-8674(94)90155-4
Gafvelin, 1997, Topological rules for membrane protein assembly in eukaryotic cells, J. Biol. Chem., 272, 6119, 10.1074/jbc.272.10.6119
Gavel, 1992, The distribution of charged amino acids in mitochondrial inner membrane proteins suggests different modes of membrane integration for nuclearly and mitochondrially encoded proteins, Eur.J. Biochem., 205, 1207, 10.1111/j.1432-1033.1992.tb16892.x
Gavel, 1991, The positive-inside rule applies to thylakoid membrane proteins, FEBS Lett., 282, 41, 10.1016/0014-5793(91)80440-E
Glick, 1996, Saccharomyces cerevisiae mitochondria lack a bacterial-type Sec machinery, Protein Sci., 5, 2651, 10.1002/pro.5560051229
Goder, 2001, Topogenesis of membrane proteins: determinants and dynamics, FEBS Lett., 504, 87, 10.1016/S0014-5793(01)02712-0
Hamman, 1998, BiP maintains the permeability barrier of the ER membrane by sealing the lumenal end of the translocon pore before and early in translocation, Cell, 92, 747, 10.1016/S0092-8674(00)81403-8
Harms, 2001, The early interaction of the outer membrane protein PhoE with the periplasmic chaperone Skp occurs at the cytoplasmic membrane, J. Biol. Chem., 276, 18804, 10.1074/jbc.M011194200
Heinrich, 2000, The Sec61p complex mediates the integration of a membrane protein by allowing lipid partitioning of the transmembrane domain, Cell, 102, 233, 10.1016/S0092-8674(00)00028-3
Hell, 1997, Oxalp mediates the export of the N- and C-termini of pCoxII from the mitochondria) matrix to the intermembrane space, FEBS Lett., 418, 367, 10.1016/S0014-5793(97)01412-9
Hell, 1998, Oxalp, an essential component of the N-tail protein export machinery in mitochondria, Proc. Natl. Acad. Sci. USA, 95, 2250, 10.1073/pnas.95.5.2250
Hell, 2001, Oxalp acts as a general membrane insertion machinery for proteins encoded by mitochondrial DNA, EMBO J, 20, 1281, 10.1093/emboj/20.6.1281
Hermansson, 2001, Formation of “helical hairpins” during membrane protein integration into the ER membrane. Role of the N- and C-terminal flanking regions, J. ol. Biol., 313, 1171, 10.1006/jmbi.2001.5108
Honsho, 2001, Topogenesis of peroxisomal membrane protein requires a short, positively charged intervening-loop sequence and flanking hydrophobic segments-study using human membrane protein PMP34, J. Biol. Chem., 276, 9375, 10.1074/jbc.M003304200
Jayasinghe, 2001, Energetics, stability, and prediction of transmembrane helices, J. Mol. Biol., 312, 927, 10.1006/jmbi.2001.5008
Johnson, 1999, The translocon: a dynamic gateway at the ER membrane, Annu. Rev. Cell Dev. Biol., 15, 799, 10.1146/annurev.cellbio.15.1.799
Just, 1996, Protein insertion into the peroxisomal membrane, Ann. N.Y. Acad. Sci., 804, 60, 10.1111/j.1749-6632.1996.tb18608.x
Koehler, 2000, Protein translocation pathways of the mitochondrion, FEBS Lett., 476, 27, 10.1016/S0014-5793(00)01664-1
Kuroiwa, 1991, Systematic analysis of stop-transfer sequence for microsomal membrane, J. Biol. Chem., 266, 9251, 10.1016/S0021-9258(18)31577-1
Kutay, 1995, Transport route for synaptobrevin via a novel pathway for insertion into the endoplasmic reticulum, EMBO J., 14, 217, 10.1002/j.1460-2075.1995.tb06994.x
Liao, 1997, Both lumenal and cytosolic gating of the aqueous ER translocon pore are regulated from inside the ribosome during membrane protein integration, Cell, 90, 31, 10.1016/S0092-8674(00)80311-6
Luirinkj Samuelsson, 2001, YidC/Oxalp/Alb3: evolutionarily conserved mediators of membrane protein assembly, FEBS Lett., 501, 1, 10.1016/S0014-5793(01)02616-3
Mant, 2001, Insertion of PsaK into the thylakoid membrane in a “horseshoe” conformation occurs in the absence of signal recognition particle, nucleoside triphosphates, or functional Albino3, J. Biol. Chem., 276, 36200, 10.1074/jbc.M102914200
Molik, 2001, The Rieske Fe/S protein of the cytochrome b6/f complex in chloroplasts: missing link in the evolution of protein transport pathways in chloroplasts?, J. Biol. Chem., 276, 42761, 10.1074/jbc.M106690200
Monné, 1999, N-tail translocation in a eukaryotic polytopic membrane protein—synergy between neighboring transmembrane segments, Eur. J. Biochem., 263, 264, 10.1046/j.1432-1327.1999.00498.x
Monné, 1999, A turn propensity scale for transmembrane helices, J. Mol. Bio., 288, 141, 10.1006/jmbi.1999.2657
Monné, 1999, Turns in transmembrane helices: determination of the minimal length of a “helical hairpin” and derivation of a fine-grained turn propensity scale, J. Mol. Biol., 293, 807, 10.1006/jmbi.1999.3183
Nilsson, 1998, Breaking the camel's back: proline-induced turns in a model transmembrane helix, J. Mol. Biol., 284, 1185, 10.1006/jmbi.1998.2219
Nilsson, 2000, Distant downstream sequence determinants can control N-tail translocation during protein insertion into the endoplasmic reticulum membrane, J. Biol. Chem., 275, 6207, 10.1074/jbc.275.9.6207
Ota, 1998, Forced transmembrane orientation of hydrophilic polypeptide segments in multispanning membrane proteins, Mol. Cell, 2, 495, 10.1016/S1097-2765(00)80149-5
Pause, 1997, Cytosolic factors mediate protein insertion into the peroxisomal membrane, FEBS Lett., 414, 95, 10.1016/S0014-5793(97)00975-7
Pfanner, 2001, Versatility of the mitochondrial protein import machinery, Nature Rev. Mol Cell Biol., 2, 339, 10.1038/35073006
Rojo, 1999, N-terminal tail export from the mitochondrial matrix—adherence to the prokaryotic “positive-inside” rule of membrane protein topology, J. Biol. Chem., 274, 19617, 10.1074/jbc.274.28.19617
Sääf, 1995, SecA-dependence of the translocation of a large periplasmic loop in the E. coli MalF inner membrane protein is a function of sequence context, Mol Membr. Biol., 12, 209, 10.3109/09687689509027509
Sääf, 1998, Stop-transfer function of pseudo-random amino acid segments during translocation across prokaryotic and eukaryotic membranes, Eur. J. Biochem., 251, 821, 10.1046/j.1432-1327.1998.2510821.x
Sääf, 1999, Divergent evolution of membrane protein topology: the Escherichia coli RnfA and RnfE homologues, 96, 8540
Sääf, 2000, Formation of cytoplasmic turns between two closely spaced transmembrane helices during membrane protein integration into the ER membrane, J. Mol. Biol., 301, 191, 10.1006/jmbi.2000.3933
Sääf, 2001, The internal repeats in the Na+/Ca2+ exchanger-related Escherichia coli protein YrbG have opposite membrane topologies, J. Biol. Chem., 276, 18905, 10.1074/jbc.M101716200
Sacksteder, 2000, The genetics of peroxisome biogenesis, Annu. Rev. Genet., 34, 623, 10.1146/annurev.genet.34.1.623
Samuelson, 2000, YidC mediates membrane protein insertion in bacteria, Nature, 406, 637, 10.1038/35020586
Samuelson, 2001, Function of YidC for the insertion of M13 procoat protein in Escherichia coli—translocation of mutants that show differences in their membrane potential dependence and Sec requirement, J. Biol. Chem., 276, 34847, 10.1074/jbc.M105793200
Schäfer, 1999, Skp, a molecular chaperone of gram-negative bacteria, is required for the formation of soluble periplasmic intermediates of outer membrane proteins, J. Biol. Chem., 274, 24567, 10.1074/jbc.274.35.24567
Schulz, 2000, β-Barrel membrane proteins, Curr. Opin. Struct. Biol., 10, 443, 10.1016/S0959-440X(00)00120-2
Scotti, 2000, YidC, the Escherichia coli homologue of mitochondria) Oxalp, is a component of the Sec translocase, EMBO J, 19, 542, 10.1093/emboj/19.4.542
Sipos, 1993, Predicting the topology of eukaryotic membrane proteins, Eur. J. Biochem., 213, 1333, 10.1111/j.1432-1033.1993.tb17885.x
Soll, 1998, Protein translocation into and across the chloroplastic envelope membranes, Plant Mol. Biol., 38, 191, 10.1023/A:1006034020192
Stuart, 1996, Topogenesis of inner membrane proteins of mitochondria, Trends Biochem. Sci., 21, 261, 10.1016/0968-0004(96)10035-9
Sundberg, 1997, Albino3, an Arabidopsis nuclear gene essential for chloroplast differentiation, encodes a chloroplast protein that shows homology to proteins present in bacterial membranes and yeast mitochondria, Plant Cell, 9, 717
Tamm, 2001, Structure and assembly of betabarrel membrane proteins, J. Biol. Chem., 276, 32399, 10.1074/jbc.R100021200
Tokatlidis, 1996, Translocation arrest of an intramitochondrial sorting signal next to TIM1l at the inner-membrane import site, Nature, 384, 585, 10.1038/384585a0
Tusnady, 1998, Principles governing amino acid composition of integral membrane proteins: application to topology prediction, J. Mol. Biol., 283, 489, 10.1006/jmbi.1998.2107
Urbanus, 2001, Sec-dependent membrane protein insertion: sequential interaction of nascent FtsQ with SecY and YidC, EMBO Rep., 2, 524, 10.1093/embo-reports/kve108
van der Laan, 2001, Reconstitution of Sec-dependent membrane protein insertion: nascent FtsQ interacts with YidC in a SecYEG-dependent manner, EMBO Rep., 2, 519, 10.1093/embo-reports/kve106
van de Vossenberg, 1998, The positive inside rule is not determined by the polarity of the delta psi (transmembrane electrical potential), Mol. Microbiol., 29, 1125, 10.1046/j.1365-2958.1998.01001.x
van Klompenburg, 1997, Anionic phospholipids are determinants of membrane protein topology, EMBO J., 16, 4261, 10.1093/emboj/16.14.4261
von Heijne, 1986, The distribution of positively charged residues in bacterial inner membrane proteins correlates with the trans-membrane topology, EMBO J., 5, 3021, 10.1002/j.1460-2075.1986.tb04601.x
Wahlberg, 1997, Multiple determinants direct the orientation of signal-anchor proteins: the topogenic role of the hydrophobic signal domain, J. Cell Biol., 137, 555, 10.1083/jcb.137.3.555
Wallin, 1995, Properties of N-terminal tails in Gprotein coupled receptors—a statistical study, Protein Eng., 8, 693, 10.1093/protein/8.7.693
Wallin, 1998, Genome-wide analysis of integral membrane proteins from eubacterial, archaean, and eukaryotic organisms, Protein Sci., 7, 1029, 10.1002/pro.5560070420
Whitley, 1996, A 12 residues long poly-leucine tail is sufficient to anchor synaptobrevin to the ER membrane, J. Biol. Chem., 271, 7583, 10.1074/jbc.271.13.7583