Membrane Interactions of the Peroxisomal Proteins PEX5 and PEX14
Tóm tắt
Human PEX5 and PEX14 are essential components of the peroxisomal translocon, which mediates import of cargo enzymes into peroxisomes. PEX5 is a soluble receptor for cargo enzymes comprised of an N-terminal intrinsically disordered domain (NTD) and a C-terminal tetratricopeptide (TPR) domain, which recognizes peroxisomal targeting signal 1 (PTS1) peptide motif in cargo proteins. The PEX5 NTD harbors multiple WF peptide motifs (WxxxF/Y or related motifs) that are recognized by a small globular domain in the NTD of the membrane-associated protein PEX14. How the PEX5 or PEX14 NTDs bind to the peroxisomal membrane and how the interaction between the two proteins is modulated at the membrane is unknown. Here, we characterize the membrane interactions of the PEX5 NTD and PEX14 NTD
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Tài liệu tham khảo
Azevedo, 2006, Pex14p, more than just a docking protein., Biochim. Biophys. Acta, 1763, 1574, 10.1016/j.bbamcr.2006.09.002
Barros-Barbosa, 2019, Membrane topologies of PEX 13 and PEX 14 provide new insights on the mechanism of protein import into peroxisomes., FEBS J., 286, 205, 10.1111/febs.14697
Chen, 2013, Fusion protein linkers: property, design and functionality., Adv. Drug Deliv. Rev., 65, 1357, 10.1016/j.addr.2012.09.039
Cornell, 2006, Amphipathic helices as mediators of the membrane interaction of amphitropic proteins, and as modulators of bilayer physical properties., Curr. Protein Pept. Sci., 7, 539, 10.2174/138920306779025675
Dammai, 2001, The human peroxisomal targeting signal receptor, Pex5p, is translocated into the peroxisomal matrix and recycled to the cytosol., Cell, 105, 187, 10.1016/s0092-8674(01)00310-5
Daragan, 1997, Motional model analyses of protein and peptide dynamics using 13C and 15N NMR relaxation., Prog. NMR Spectrosc., 31, 63, 10.1016/s0079-6565(97)00006-x
de Jesus, 2013, The role of tryptophan side chains in membrane protein anchoring and hydrophobic mismatch., Biochim. Biophys. Acta, 1828, 864, 10.1016/j.bbamem.2012.09.009
Delaglio, 1995, NMRPipe: a multidimensional spectral processing system based on UNIX pipes., J. Biomol. NMR, 6, 277, 10.1007/BF00197809
Distel, 1996, A unified nomenclature for peroxisome biogenesis factors., J. Cell Biol., 135, 1, 10.1083/jcb.135.1.1
Dodt, 1996, Multiple PEX genes are required for proper subcellular distribution and stability of Pex5p, the PTS1 receptor: evidence that PTS1 protein import is mediated by a cycling receptor., J. Cell Biol., 135, 1763, 10.1083/jcb.135.6.1763
Emmanouilidis, 2016, Structural biology of the import pathways of peroxisomal matrix proteins., Biochim. Biophys. Acta, 1863, 804, 10.1016/j.bbamcr.2015.09.034
Erdmann, 2005, Peroxisomal matrix protein import: the transient pore model., Nat. Rev. Mol. Cell Biol., 6, 738, 10.1038/nrm1710
Erdmann, 1997, Peroxisomes: organelles at the crossroads., Trends Cell Biol., 7, 400, 10.1016/s0962-8924(97)01126-4
Farrow, 1994, Backbone dynamics of a free and phosphopeptide-complexed Src homology 2 domain studied by 15N NMR relaxation., Biochemistry, 33, 5984, 10.1021/bi00185a040
Gatto, 2000, Peroxisomal targeting signal-1 recognition by the TPR domains of human PEX5., Nat. Struct. Biol., 7, 1091, 10.1038/81930
Ghosh, 2010, A proteome-wide perspective on peroxisome targeting signal 1(PTS1)-Pex5p affinities., J. Am. Chem. Soc., 132, 3973, 10.1021/ja9109049
Gould, 1987, Identification of a peroxisomal targeting signal at the carboxy terminus of firefly luciferase., J. Cell Biol., 105, 2923, 10.1083/jcb.105.6.2923
Hagn, 2018, Assembly of phospholipid nanodiscs of controlled size for structural studies of membrane proteins by NMR., Nat. Protoc., 13, 79, 10.1038/nprot.2017.094
Hardeman, 1990, Effect of peroxisome proliferation on ether phospholipid biosynthesizing enzymes in rat liver., Int. J. Biochem., 22, 1413, 10.1016/0020-711x(90)90231-q
Hildebrand, 2004, Structural features of transmembrane helices., FEBS Lett., 559, 145, 10.1016/s0014-5793(04)00061-4
Kerssen, 2006, Membrane association of the cycling peroxisome import receptor Pex5p., J. Biol. Chem., 281, 27003, 10.1074/jbc.m509257200
Klopfer, 2019, Beyond detergent micelles: the advantages and applications of non-micellar and lipid-based membrane mimetics for solution-state NMR., Prog. Nucl. Magn. Reson. Spectrosc., 271, 10.1016/j.pnmrs.2019.08.001
Lazarow, 1985, Biogenesis of peroxisomes., Annu. Rev. Cell Biol., 1, 489, 10.1146/annurev.cb.01.110185.002421
Ma, 2011, Peroxisome assembly: matrix and membrane protein biogenesis., J. Cell Biol., 193, 7, 10.1083/jcb.201010022
Marcotte, 2005, Bicelles as model membranes for solid- and solution-state NMR studies of membrane peptides and proteins., Concepts Magn. Reson. Part A, 17, 10.1002/cmr.a.20025
Meinecke, 2010, The peroxisomal importomer constitutes a large and highly dynamic pore., Nat. Cell Biol., 12, 273, 10.1038/ncb2027
Neufeld, 2009, Structural basis for competitive interactions of Pex14 with the import receptors Pex5 and Pex19., EMBO J., 28, 745, 10.1038/emboj.2009.7
Neuhaus, 2014, A novel Pex14 protein-interacting site of human Pex5 is critical for matrix protein import into peroxisomes., J. Biol. Chem., 289, 437, 10.1074/jbc.m113.499707
Pick, 1981, Liposomes with a large trapping capacity prepared by freezing and thawing of sonicated phospholipid mixtures., Arch. Biochem. Biophys., 212, 186, 10.1016/0003-9861(81)90358-1
Renner, 2002, Practical aspects of the 2D 15N-[1h]-NOE experiment., J. Biomol. NMR, 23, 23, 10.1023/A:1015385910220
Rucktaschel, 2011, Protein import machineries of peroxisomes., Biochim. Biophys. Acta, 1808, 892, 10.1016/j.bbamem.2010.07.020
Saidowsky, 2001, The di-aromatic pentapeptide repeats of the human peroxisome import receptor PEX5 are separate high affinity binding sites for the peroxisomal membrane protein PEX14., J. Biol. Chem., 276, 34524, 10.1074/jbc.m104647200
Sattler, 1999, Heteronuclear multidimensional NMR experiments for the structure determination of proteins in solution employing pulsed field gradients., Prog. NMR Spectrosc., 34, 93, 10.1016/s0079-6565(98)00025-9
Schliebs, 1999, Recombinant human peroxisomal targeting signal receptor PEX5. Structural basis for interaction of PEX5 with PEX14., J. Biol. Chem., 274, 5666, 10.1074/jbc.274.9.5666
Sommer, 2012, A fast and simple method for probing the interaction of peptides and proteins with lipids and membrane-mimetics using GB1 fusion proteins and NMR spectroscopy., Protein Sci., 21, 1566, 10.1002/pro.2127
Sommer, 2013, NMR- and circular dichroism-monitored lipid binding studies suggest a general role for the FATC domain as membrane anchor of phosphatidylinositol 3-kinase-related kinases (PIKK)., J. Biol. Chem., 288, 20046, 10.1074/jbc.m113.467233
Spera, 1991, Empirical correlation between protein backbone conformation and Ca and Cb 13C nuclear magnetic resonance chemical shifts., J. Am. Chem. Soc., 113, 5490, 10.1021/ja00014a071
Stanley, 2006, Recognition of a functional peroxisome type 1 target by the dynamic import receptor pex5p., Mol. Cell, 24, 653, 10.1016/j.molcel.2006.10.024
Vranken, 2005, The CCPN data model for NMR spectroscopy: development of a software pipeline., Proteins, 59, 687, 10.1002/prot.20449
Wanders, 2004, Metabolic and molecular basis of peroxisomal disorders: a review., Am. J. Med. Genet. A, 355, 10.1002/ajmg.a.20661
Wanders, 2006, Biochemistry of mammalian peroxisomes revisited., Ann. Rev. Biochem., 75, 295, 10.1146/annurev.biochem.74.082803.133329
Warschawski, 2011, Choosing membrane mimetics for NMR structural studies of transmembrane proteins., Biochim. Biophys. Acta, 1808, 1957, 10.1016/j.bbamem.2011.03.016