Membrane Architecture in the Spotlight of Correlative Microscopy
Tài liệu tham khảo
Porter, 1953, Observations on a submicroscopic basophilic component of cytoplasm, J. Exp. Med., 97, 727, 10.1084/jem.97.5.727
Roth, 1964, Yolk protein uptake in the oocyte of the mosquito Aedes aegypti. L., J. Cell Biol., 20, 313, 10.1083/jcb.20.2.313
Jun, 2019, Advances in cryo-correlative light and electron microscopy: applications for studying molecular and cellular events, Protein J., 38, 609, 10.1007/s10930-019-09856-1
Ando, 2018, The 2018 correlative microscopy techniques roadmap, J. Phys. D. Appl. Phys., 51, 443001, 10.1088/1361-6463/aad055
Howes, 2018, Correlative microscopy for structural microbiology, Curr. Opin. Microbiol., 43, 132, 10.1016/j.mib.2018.01.009
Bykov, 2016, Correlative light and electron microscopy methods for the study of virus-cell interactions, FEBS Lett., 590, 1877, 10.1002/1873-3468.12153
Kukulski, 2011, Correlated fluorescence and 3D electron microscopy with high sensitivity and spatial precision, J. Cell Biol., 192, 111, 10.1083/jcb.201009037
Watanabe, 2011, Protein localization in electron micrographs using fluorescence nanoscopy, Nat. Methods, 8, 80, 10.1038/nmeth.1537
Schorb, 2016, New hardware and workflows for semi-automated correlative cryo-fluorescence and cryo-electron microscopy/tomography, J. Struct. Biol., 197, 83, 10.1016/j.jsb.2016.06.020
Medalia, 2002, Macromolecular architecture in eukaryotic cells visualized by cryoelectron tomography, Science, 298, 1209, 10.1126/science.1076184
Al-Amoudi, 2007, The molecular architecture of cadherins in native epidermal desmosomes, Nature, 450, 832, 10.1038/nature05994
Mahamid, 2016, Visualizing the molecular sociology at the HeLa cell nuclear periphery, Science, 351, 969, 10.1126/science.aad8857
Dubochet, 2001, The cell in absence of aggregation artifacts, Micron, 32, 91, 10.1016/S0968-4328(00)00026-3
Beck, 2016, Cryo-electron tomography: can it reveal the molecular sociology of cells in atomic detail?, Trends Cell Biol., 26, 825, 10.1016/j.tcb.2016.08.006
Kumar, 2018, VPS13A and VPS13C are lipid transport proteins differentially localized at ER contact sites, J. Cell Biol., 217, 3625, 10.1083/jcb.201807019
Chang, 2019, Spastin tethers lipid droplets to peroxisomes and directs fatty acid trafficking through ESCRT-III, J. Cell Biol., 218, 2583, 10.1083/jcb.201902061
Hoffmann, 2019, Tricalbins contribute to cellular lipid flux and form curved ER-PM contacts that are bridged by rod-shaped structures, Dev. Cell, 51, 488, 10.1016/j.devcel.2019.09.019
Ripoll, 2018, Myosin VI and branched actin filaments mediate membrane constriction and fission of melanosomal tubule carriers, J. Cell Biol., 217, 2709, 10.1083/jcb.201709055
Stradalova, 2009, Furrow-like invaginations of the yeast plasma membrane correspond to membrane compartment of Can1, J. Cell Sci., 122, 2887, 10.1242/jcs.051227
Bharat, 2018, Correlative microscopy of vitreous sections provides insights into BAR-domain organization in situ, Structure, 26, 879, 10.1016/j.str.2018.03.015
Mahamid, 2019, Liquid-crystalline phase transitions in lipid droplets are related to cellular states and specific organelle association, Proc. Natl. Acad. Sci. U. S. A., 116, 16866, 10.1073/pnas.1903642116
Ader, 2019, Molecular and topological reorganizations in mitochondrial architecture interplay during Bax-mediated steps of apoptosis, Elife, 8, 10.7554/eLife.40712
Bauerlein, 2017, In situ architecture and cellular interactions of PolyQ inclusions, Cell, 171, 179, 10.1016/j.cell.2017.08.009
Shahmoradian, 2019, Lewy pathology in Parkinson’s disease consists of crowded organelles and lipid membranes, Nat. Neurosci., 22, 1099, 10.1038/s41593-019-0423-2
Spillantini, 1997, Alpha-synuclein in Lewy bodies, Nature, 388, 839, 10.1038/42166
Goedert, 2013, 100 years of Lewy pathology, Nat. Rev. Neurol., 9, 13, 10.1038/nrneurol.2012.242
Melia, 2017, Escaping Host Factor PI4KB inhibition: enterovirus genomic RNA replication in the absence of replication organelles, Cell Rep., 21, 587, 10.1016/j.celrep.2017.09.068
Romero-Brey, 2012, Three-dimensional architecture and biogenesis of membrane structures associated with hepatitis C virus replication, PLoS Pathog., 8, 10.1371/journal.ppat.1003056
Scaturro, 2015, Dengue virus non-structural protein 1 modulates infectious particle production via interaction with the structural proteins, PLoS Pathog., 11, 10.1371/journal.ppat.1005277
Lee, 2019, Spatiotemporal coupling of the hepatitis C virus replication cycle by creating a lipid droplet- proximal membranous replication compartment, Cell Rep., 27, 3602, 10.1016/j.celrep.2019.05.063
Jun, 2011, Direct visualization of HIV-1 with correlative live-cell microscopy and cryo-electron tomography, Structure, 19, 1573, 10.1016/j.str.2011.09.006
Hampton, 2017, Correlated fluorescence microscopy and cryo-electron tomography of virus-infected or transfected mammalian cells, Nat. Protoc., 12, 150, 10.1038/nprot.2016.168
Weiner, 2019, The pathogen-host interface in three dimensions: correlative FIB/SEM Applications, Trends Microbiol., 27, 426, 10.1016/j.tim.2018.11.011
Lerner, 2016, Lymphatic endothelial cells are a replicative niche for Mycobacterium tuberculosis, J. Clin. Invest., 126, 1093, 10.1172/JCI83379
Sedzicki, 2018, 3D correlative electron microscopy reveals continuity of Brucella-containing vacuoles with the endoplasmic reticulum, J. Cell Sci., 131, 10.1242/jcs.210799
Dewson, 2016, Doughnuts, daisy chains and crescent moons: the quest for the elusive apoptotic pore, EMBO J., 35, 371, 10.15252/embj.201593723
McArthur, 2018, BAK/BAX macropores facilitate mitochondrial herniation and mtDNA efflux during apoptosis, Science, 359, 10.1126/science.aao6047
Rustom, 2004, Nanotubular highways for intercellular organelle transport, Science, 303, 1007, 10.1126/science.1093133
Sartori-Rupp, 2019, Correlative cryo-electron microscopy reveals the structure of TNTs in neuronal cells, Nat. Commun., 10, 342, 10.1038/s41467-018-08178-7
Lenart, 2003, Nuclear envelope dynamics in oocytes: from germinal vesicle breakdown to mitosis, Curr. Opin. Cell Biol., 15, 88, 10.1016/S0955-0674(02)00011-X
Hampoelz, 2016, Pre-assembled nuclear pores insert into the nuclear envelope during early development, Cell, 166, 664, 10.1016/j.cell.2016.06.015
Otsuka, 2016, Nuclear pore assembly proceeds by an inside-out extrusion of the nuclear envelope, Elife, 5, 10.7554/eLife.19071
Olmos, 2015, ESCRT-III controls nuclear envelope reformation, Nature, 522, 236, 10.1038/nature14503
Zhen, 2019, ESCRT-mediated phagophore sealing during mitophagy, Autophagy, 1
Adell, 2017, Recruitment dynamics of ESCRT-III and Vps4 to endosomes and implications for reverse membrane budding, Elife, 6, 10.7554/eLife.31652
Teis, 2008, Ordered assembly of the ESCRT-III complex on endosomes is required to sequester cargo during MVB formation, Dev. Cell, 15, 578, 10.1016/j.devcel.2008.08.013
Fermie, 2018, Single organelle dynamics linked to 3D structure by correlative live-cell imaging and 3D electron microscopy, Traffic, 19, 354, 10.1111/tra.12557
Franke, 2019, Correlative single-molecule localization microscopy and electron tomography reveals endosome nanoscale domains, Traffic, 20, 601, 10.1111/tra.12671
Fabrowski, 2013, Tubular endocytosis drives remodelling of the apical surface during epithelial morphogenesis in Drosophila, Nat. Commun., 4, 2244, 10.1038/ncomms3244
Kukulski, 2016, Clathrin modulates vesicle scission, but not invagination shape, in yeast endocytosis, Elife, 5, 10.7554/eLife.16036
Kukulski, 2012, Plasma membrane reshaping during endocytosis is revealed by time-resolved electron tomography, Cell, 150, 508, 10.1016/j.cell.2012.05.046
Avinoam, 2015, Endocytic sites mature by continuous bending and remodeling of the clathrin coat, Science, 348, 1369, 10.1126/science.aaa9555
Picco, 2018, The contributions of the actin machinery to endocytic membrane bending and vesicle formation, Mol. Biol. Cell, 29, 1346, 10.1091/mbc.E17-11-0688
Bucher, 2018, Clathrin-adaptor ratio and membrane tension regulate the flat-to-curved transition of the clathrin coat during endocytosis, Nat. Commun., 9, 1109, 10.1038/s41467-018-03533-0
Kaksonen, 2003, A pathway for association of receptors, adaptors, and actin during endocytic internalization, Cell, 115, 475, 10.1016/S0092-8674(03)00883-3
Sochacki, 2017, Endocytic proteins are partitioned at the edge of the clathrin lattice in mammalian cells, Nat. Cell Biol., 19, 352, 10.1038/ncb3498
Delevoye, 2016, BLOC-1 brings together the actin and microtubule cytoskeletons to generate recycling endosomes, Curr. Biol., 26, 1, 10.1016/j.cub.2015.11.020
Edgar, 2016, Tetherin is an exosomal tether, Elife, 5, 10.7554/eLife.17180
Kozik, 2013, A human genome-wide screen for regulators of clathrin-coated vesicle formation reveals an unexpected role for the V-ATPase, Nat. Cell Biol., 15, 50, 10.1038/ncb2652
Laguerre, 2018, Novel lipid tools and probes for biological investigations, Curr. Opin. Cell Biol., 53, 97, 10.1016/j.ceb.2018.06.013
Greenwood, 2019, Subcellular antibiotic visualization reveals a dynamic drug reservoir in infected macrophages, Science, 364, 1279, 10.1126/science.aat9689
Szwedziak, 2019, Bidirectional contraction of a type six secretion system, Nat. Commun., 10, 1565, 10.1038/s41467-019-09603-1
Uttamapinant, 2015, Genetic code expansion enables live-cell and super-resolution imaging of site-specifically labeled cellular proteins, J. Am. Chem. Soc., 137, 4602, 10.1021/ja512838z
Stepanek, 2016, Microtubule doublets are double-track railways for intraflagellar transport trains, Science, 352, 721, 10.1126/science.aaf4594
Kozminski, 1993, A motility in the eukaryotic flagellum unrelated to flagellar beating, Proc. Natl. Acad. Sci. U. S. A., 90, 5519, 10.1073/pnas.90.12.5519
Hoffman, 2020, Correlative three-dimensional super-resolution and block-face electron microscopy of whole vitreously frozen cells, Science, 10.1126/science.aaz5357
Tuijtel, 2019, Correlative cryo super-resolution light and electron microscopy on mammalian cells using fluorescent proteins, Sci. Rep., 9, 1369, 10.1038/s41598-018-37728-8
Moser, 2019, Cryo-SOFI enabling low-dose super-resolution correlative light and electron cryo-microscopy, Proc. Natl. Acad. Sci. U. S. A., 116, 4804, 10.1073/pnas.1810690116
Toro-Nahuelpan, 2019, Tailoring cryo-electron microscopy grids by photo-micropatterning for in-cell structural studies, Nat. Methods, 17, 50, 10.1038/s41592-019-0630-5
Engel, 2019, Extracellular matrix micropatterning technology for whole cell cryogenic electron microscopy studies, J. Micromech. Microeng., 29, 115018, 10.1088/1361-6439/ab419a
Zachs, 2020, Fully automated, sequential focused ion beam milling for cryo-electron tomography, Elife, 10.7554/eLife.52286.sa2
Buckley, 2020, Automated cryo-lamella preparation for high-throughput in-situ structural biology, J. Struct. Biol., 10.1016/j.jsb.2020.107488
Buchholz, 2019, Content-aware image restoration for electron microscopy, Methods Cell Biol., 152, 277, 10.1016/bs.mcb.2019.05.001
Song, 2019, In situ structure determination at nanometer resolution using TYGRESS, Nat. Methods, 17, 201, 10.1038/s41592-019-0651-0
Karreman, 2016, Fast and precise targeting of single tumor cells in vivo by multimodal correlative microscopy, J. Cell Sci., 129, 444, 10.1242/jcs.181842
Karreman, 2016, Intravital correlative microscopy: imaging life at the nanoscale, Trends Cell Biol., 26, 848, 10.1016/j.tcb.2016.07.003