Báo cáo cuộc họp của hội nghị thường niên lần thứ tư của Hiệp hội Vi sinh vật Ba Dịch vụ

Glaven S, Racicot K, Leary DH, Karl JP, Arcidiacono S, Dancy BCR, Chrisey LA, Soares JW. The current and tuture state of Department of Defense (DoD) microbiome research: a summary of the inaugural DoD Tri-Service Microbiome Consortium informational meeting. mSystems. 2018;3:e00086-18. Arcidiacono S, Soares JW, Karl JP, Chrisey L, Dancy BCR, Goodson MS, Gregory F, Hammamieh R, Kelley-Loughnane N, Kokoska R, Riddle M, Whitaker K, Racicot K. The current and future direction of DoD gut microbiome research: a summary of the first DoD gut microbiome informational meeting. Stand Genomic Sci. 2018;13:5. Hammamieh R, Racicot K, Dancy BCR, Hentchel K, Gautam A, Mauzy C, Leary D. Department of Defense microbiome research: a summary of the second annual DoD Tri-Service Microbiome Consortium informational meeting. Defense Technical Information Library; 2020. Karl JP, Barbato RA, Doherty LA, Gautam A, Glaven SM, Kokoska RJ, Leary D, Mickol RL, Perisin MA, Hoisington AJ, Van Opstal EJ, Varaljay V, Kelley-Loughnane N, Mauzy CA, Goodson MS, Soares JW. Meeting report of the third annual Tri-Service Microbiome Consortium symposium. Environ Microbiome. 2020;15:12. Agans RT, Giles GE, Goodson MS, Karl JP, Leyh S, Mumy KL, Racicot K, Soares JS, on behalf of the Tri-Service Microbiome Consortium. Evaluation of probiotics for warfighter health and performance. Front Nutr. 2020;7:70. Karl JP. Gut microbiota-targeted interventions for reducing the incidence, duration, and severity of respiratory tract infections in healthy non-elderly adults. Mil Med. 2021;186:e310–8. Smanski MJ, Zhou H, Claesen J, Shen B, Fischbach MA, Voigt CA. Synthetic biology to access and expand nature’s chemical diversity. Nat Rev Microbiol. 2016;14:135–49. Mimee M, Tucker AC, Voigt CA, Lu TK. Programming a human commensal bacterium, Bacteroides thetaiotaomicron, to Sense and respond to stimuli in the murine gut microbiota. Cell Syst. 2015;1:62–71. Taketani M, Zhang J, Zhang S, Triassi AJ, Huang YJ, Griffith LG, Voigt CA. Genetic circuit design automation for the gut resident species Bacteroides thetaiotaomicron. Nat Biotechnol. 2020;38:962–9. Ronda C, Chen SP, Cabral V, Yaung SJ, Wang HH. Metagenomic engineering of the mammalian gut microbiome in situ. Nat Methods. 2019;16:167–70. Dichosa AE, Daughton AR, Reitenga KG, Fitzsimmons MS, Han CS. Capturing and cultivating single bacterial cells in gel microdroplets to obtain near-complete genomes. Nat Protoc. 2014;9:608–21. Ohan J, Pelle B, Nath P, Huang JH, Hovde B, Vuyisich M, Dichosa AE, Starkenburg SR. High-throughput phenotyping of cell-to-cell interactions in gel microdroplet pico-cultures. Biotechniques. 2019;66:218–24. Htet TD, Godneva A, Liu Z, Chalmers E, Kolobkov D, Snaith JR, Richens R, Toth K, Danta M, Hng TM, Elinav E, Segal E, Greenfield JR, Samocha-Bonet D. Rationale and design of a randomised controlled trial testing the effect of personalised diet in individuals with pre-diabetes or type 2 diabetes mellitus treated with metformin. BMJ Open. 2020;10:e037859. Lev-Sagie A, Goldman-Wohl D, Cohen Y, Dori-Bachash M, Leshem A, Mor U, Strahilevitz J, Moses AE, Shapiro H, Yagel S, Elinav E. Vaginal microbiome transplantation in women with intractable bacterial vaginosis. Nat Med. 2019;25:1500–4. Kolodziejczyk AA, Federici S, Zmora N, Mohapatra G, Dori-Bachash M, Hornstein S, Leshem A, Reuveni D, Zigmond E, Tobar A, Salame TM, Harmelin A, Shlomai A, Shapiro H, Amit I, Elinav E. Acute liver failure is regulated by MYC- and microbiome-dependent programs. Nat Med. 2020;26:1899–911. Hammamieh R, Chakraborty N, De Lima TC, Meyerhoff J, Gautam A, Muhie S, D’Arpa P, Lumley L, Carroll E, Jett M. Murine model of repeated exposures to conspecific trained aggressors simulates features of post-traumatic stress disorder. Behav Brain Res. 2012;235:55–66. Ibáñez L, Rouleau M, Wakkach A, Blin-Wakkach C. Gut microbiome and bone. Joint Bone Spine. 2019;86:43–7. Walters WA, Reyes F, Soto GM, Reynolds ND, Fraser JA, Aviles R, Tribble DR, Irvin AP, Kelley-Loughnane N, Gutierrez RL, Riddle MS, Ley RE, Goodson MS, Simons MP. Epidemiology and associated microbiota changes in deployed military personnel at high risk of traveler’s diarrhea. PLoS ONE. 2020;15:e0236703. Stamps BW, Lyon WJ, Irvin AP, Kelley-Loughnane K, Goodson MS. A pilot study of the effect of deployment on the gut microbiome and traveler’s diarrhea susceptibility. Front Cell Infect Microbiol. 2020;10:589297. Pold G, Grandy AS, Melillo JM, DeAngelis KM. Changes in substrate availability drive carbon cycle response to chronic warming. Soil Biol Biochem. 2017;110:68–78. Melillo JM, Frey SD, DeAngelis KM, Werner WJ, Bernard MJ, Bowles FP, Pold G, Knorr MA, Grandy AS. Long-term pattern and magnitude of soil carbon feedback to the climate system in a warming world. Science. 2017;358:101–5. Pold G, Melillo JM, DeAngelis KM. Two decades of warming increases diversity of a potentially lignolytic bacterial community. Front Microbiol. 2015;6:480. DeAngelis KM, Pold G, Topçuoğlu BD, van Diepen LT, Varney RM, Blanchard JL, Melillo JM, Frey SD. Long-term forest soil warming alters microbial communities in temperate forest soils. Front Microbiol. 2015;6:104. Doherty SJ, Barbato RA, Grandy AS, Thomas WK, Monteux S, Dorrepaal E, Johansson M, Ernakovich JG. The transition from stochastic to deterministic bacterial community assembly during permafrost thaw succession. Front Microbiol. 2020;11:596589. Messan KS, Jones RM, Doherty SJ, Foley K, Douglas TA, Barbato RA. The role of changing temperature in microbial metabolic processes during permafrost thaw. PLoS ONE. 2020;15:e0232169. Young NA, Lambert RL, Buch AM, Dahl CL, Harris JD, Barnhart MD, Sitko JC, Steel JJ. A synthetic biology approach using engineered bacteria to detect perfluoroalkyl substance (PFAS) contamination in water. Mil Med. 2021;186:801–7. Johnson AN, Barlow DE, Kelly AL, Varaljay VA, Crookes-Goodson WJ, Biffinger JC. Current progress towards understanding the biodegradation of synthetic condensation polymers with active hydrolases. Polymer Int. 2020. https://doi.org/10.1002/pi.6131. Hung CS, Barlow DE, Varaljay VA, Drake CA, Crouch AL, Russell JN Jr, Nadeau LJ, Crookes-Goodson WJ, Biffinger JC. The biodegradation of polyester and polyester polyurethane coatings using Papiliotrema laurentii. Int Biodeterior Biodegradation. 2019;139:34–43. Bouslimani A, Sanchez LM, Garg N, Dorrestein PC. Mass spectrometry of natural products: current, emerging and future technologies. Nat Prod Rep. 2014;31:718–29. Scheubert K, Hufsky F, Petras D, Wang M, Nothias LF, Dührkop K, Bandeira N, Dorrestein PC, Böcker S. Significance estimation for large scale metabolomics annotations by spectral matching. Nat Commun. 2017;8:1–10. Mohimani H, Kersten RD, Liu WT, Wang M, Purvine SO, Wu S, Brewer HM, Pasa-Tolic L, Bandeira N, Moore BS, Pevzner PA. Automated genome mining of ribosomal peptide natural products. ACS Chem Biol. 2014;2014(9):1545–51. Wang M, Jarmusch AK, Vargas F, Aksenov AA, Gauglitz JM, Weldon K, Petras D, da Silva R, Quinn R, Melnik AV, van der Hooft JJJ, Caraballo-Rodríguez AM, Nothias LF, Aceves CM, Panitchpakdi M, Brown E, Di Ottavio F, Sikora N, Elijah EO, Labarta-Bajo L, Gentry EC, Shalapour S, Kyle KE, Puckett SP, Watrous JD, Carpenter CS, Bouslimani A, Ernst M, Swafford AD, Zúñiga EI, Balunas MJ, Klassen JL, Loomba R, Knight R, Bandeira N, Dorrestein PC. Mass spectrometry searches using MASST. Nat Biotechnol. 2020;38:23–6. Bowers SJ, Vargas F, González A, He S, Jiang P, Dorrestein PC, Knight R, Wright KP Jr, Lowry CA, Fleshner M, Vitaterna MH, Turek FW. Repeated sleep disruption in mice leads to persistent shifts in the fecal microbiome and metabolome. PLoS ONE. 2020;15:e0229001. Thompson RS, Vargas F, Dorrestein PC, Chichlowski M, Berg BM, Fleshner M. Dietary prebiotics alter novel microbial dependent fecal metabolites that improve sleep. Sci Rep. 2020;10:3848. Wang M, Carver JJ, Phelan VV, Sanchez LM, Garg N, Peng Y, Nguyen DD, et al. Sharing and community curation of mass spectrometry data with global natural products social molecular networking. Nat Biotechnol. 2016;34:828–37. Behsaz B, Mohimani H, Gurevich A, Prjibelski A, Fisher M, Vargas F, Smarr L, Dorrestein PC, Mylne JS, Pevzner PA. De novo peptide sequencing reveals many cyclopeptides in the human gut and other environments. Cell Syst. 2020;10:99–108. Agostini F, Sinn L, Petras D, Schipp CJ, Kubyshkin V, Berger AA, Dorrestein PC, Rappsilber J, Budisa N, Koksch B. Multiomics analysis provides insight into the laboratory evolution of Escherichia coli toward the metabolic usage of fluorinated indoles. ACS Cent Sci. 2020;7:81–92. Salgar-Chaparro SJ, Lepkova K, Pojtanabuntoeng T, Darwin A, Machuca LL. Nutrient level determines biofilm characteristics and subsequent impact on microbial corrosion and biocide effectiveness. Appl Environ Microbiol. 2020;86(7):e02885-19. Loto CA. Microbiological corrosion: mechanism, control and impact—a review. Int J Adv Manuf Technol. 2017;92:4241–52.