Liolios K, Mavromatis K, Tavernarakis N, Kyrpides NC. The Genomes On Line Database (GOLD) in 2007: status of genomic and metagenomic projects and their associated metadata. Nucleic Acids Res 2008; 36:D475–D479. PubMed doi:10.1093/nar/gkm884
Wu D, Hugenholtz P, Mavromatis K, Pukall R, Dalin E, Ivanova N, Kunin V, Goodwin L, Wu M, Tindall B, et al. A phylogeny-driven genomic encyclopedia of Bacteria and Archaea. Nature 2009; 462: 1056–1060. PubMed doi:10.1038/nature08656
Turnbaugh PJ, Ley RE, Hamady M, Fraser-Liggett CM, Knight R, Gordon JI. The human microbiome project. Nature 2007; 449: 804–810. PubMed doi:10.1038/nature06244
Field D, Garrity GM, Sansone SA, Sterk P, Gray T, Kyrpides N, Hirschman L, Glöckner FO, Kottmann R, Angiuoli S, et al. Meeting report: the fifth Genomic Standards Consortium (GSC) workshop. OMICS 2008; 12:109–113. PubMed doi:10.1089/omi.2008.A3B3
Field D, Garrity G, Gray T, Morrison N, Selengut J, Sterk P, Tatusova T, Thomson N, Allen MJ, Angiuoli SV, et al. The minimum information about a genome sequence (MIGS) specification. Nat Biotechnol 2008; 26:541–547. PubMed doi:10.1038/nbt1360
Field D, Sterk P, Kyrpides N, Glöckner FO, Hirschman L, Garrity G, Wooley J, Gilna P. Meeting Reports from the Genomic Standards Consortium (GSC) Workshops 6 and 7. Stand. Genomics Sci. 2009;1(1):68–71.
Gianoulis TA, Raes J, Patel PV, Bjornson R, Korbel JO, Letunic I, Yamada T, Paccanaro A, Jensen LJ, Snyder M, et al. Quantifying environmental adaptation of metabolic pathways in metagenomics. Proc Natl Acad Sci USA 2009; 106:1374–1379. PubMed doi:10.1073/pnas.0808022106
Rusch DB, Halpern AL, Sutton G, Heidelberg KB, Williamson S, Yooseph S, Wu D, Eisen JA, Hoffman JM, Remington K, et al. The Sorcerer II Global Ocean Sampling expedition: northwest Atlantic through eastern tropical Pacific. PLoS Biol 2007; 5:e77 PubMed doi:10.1371/journal.pbio.0050077
Kottmann R, Gray T, Murphy S, Kagan L, Kravitz S, Lombardot T, Field D, Glöckner FO. A standard MIGS/MIMS compliant XML Schema: toward the development of the Genomic Contextual Data Markup Language (GCDML). OMICS 2008; 12:115–121 PubMed doi:10.1089/omi.2008.0A10
Wilkening J, Desai N, Meyer F, Wilke A. Using clouds for metagenomics — A case study. 2009; IEEE Cluster 2009; New Orleans.
Field D, Tiwari B, Booth T, Houten S, Swan D, Bertrand N, Thurston M. Open software for biologists: from famine to feast. Nat Biotechnol 2006; 24:801–803. PubMed doi:10.1038/nbt0706-801
Field D, Glöckner FO, Garrity GM, Gray T, Sterk P, Cochrane G, Vaughan R, Kolker E, Kottmann R, Kyrpides N, et al. Meeting report: the fourth Genomic Standards Consortium (GSC) workshop. OMICS 2008; 12:101–108. PubMed doi:10.1089/omi.2008.0014
Van Brabant B, Gray T, Verslyppe B, Kyrpides N, Dietrich K, Glöckner FO, Cole J, Farris R, Schriml LM, De Vos P, et al. Laying the foundation for a Genomic Rosetta Stone: creating information hubs through the use of consensus identifiers. OMICS 2008; 12:123–127 PubMed doi:10.1089/omi.2008.0020
Sansone SA, Rocca-Serra P, Brandizi M, Brazma A, Field D, Fostel J, Garrow AG, Gilbert J, Goodsaid F, Hardy N, et al. The first RSBI (ISA-TAB) workshop: “can a simple format work for complex studies? OMICS 2008; 12:143–149. PubMed doi:10.1089/omi.2008.0019
Field D, Sansone SA, Collis A, Booth T, Dukes P, Gregurick SK, Kennedy KL, Kolar P, Kolker E, Maxon M, et al. ’Omics Data Sharing. Science 2009; 326:234–236. PubMed doi:10.1126/science.1180598