Measurement and reporting of data in applied biocatalysis

Perspectives in Science - Tập 1 - Trang 98-109 - 2014
Peter J. Halling1, Munishwar N. Gupta2
1Department of Pure & Applied Chemistry, University of Strathclyde, Glasgow G1 1XL, Scotland, UK
2Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi 110016, India

Tài liệu tham khảo

Adlercreutz, 1991, On the importance of the support material for enzymatic synthesis in organic media. Support effects at controlled water activity, Eur. J. Biochem., 199, 609, 10.1111/j.1432-1033.1991.tb16161.x Anicetti, 1994, Analytical considerations in the development of protein purification processes Arnold, 2003 Arnold, 2003 Babtie, 2010, What makes an enzyme promiscuous?, Curr. Opin. Chem. Biol., 14, 1, 10.1016/j.cbpa.2009.11.028 Bains, 2002 Batra, 1994, Enhancement of enzyme activity in aqueous - organic solvents mixtures, Biotechnol. Lett., 16, 1059, 10.1007/BF01022403 Bemporad, 2012, Characterizing intermolecular interactions that initiate native-like protein aggregation, Biophys. J., 102, 2595, 10.1016/j.bpj.2012.03.057 Benjamini, 1996 Bisswanger, 2011, 115 Bradford, 1976, Rapid and sensitive method for the quantification of microgram quantities of protein utilizing the principle of protein-dye binding, Anal. Biochem., 72, 248, 10.1016/0003-2697(76)90527-3 Bucak, 2003, Protein separations using colloidal magnetic nanoparticles, Biotechnol. Prog., 19, 477, 10.1021/bp0200853 Busto, 2010, Hydrolases: catalytically promiscuous enzymes for non-conventional reactions in organic synthesis, Chem. Soc. Rev., 39, 4504, 10.1039/c003811c Cao, 2000, Cross-linked enzyme aggregates: a simple and effective method for the immobilization of penicillin, Acylase Org. Lett., 2, 1361, 10.1021/ol005593x Carpenter, 1993, Separation of freezing and drying-induced denaturation of lyophilized proteins using stress-specific stabilization I: Enzymatic activity and calorimetric studies, Arch. Biochem. Biophys., 303, 456, 10.1006/abbi.1993.1309 Clapes, 1990, Enzymatic peptide synthesis in organic media: a comparative study of water-miscible and water-immiscible solvent systems, J. Biotechnol., 15, 323, 10.1016/0168-1656(90)90090-X Ditsch, 2006, Ion-exchange purification of proteins using magnetic nanoclusters, Biotechnol. Prog., 22, 1153, 10.1021/bp050290t Dixon, 1979 2002 Evitt, 2011, Lipase CAL-B does not catalyze a promiscuous decarboxylative aldol addition or Knoevenagel reaction, Green Chem., 13, 1141, 10.1039/c0gc00505c Feng, 2009, Lipase-catalysed decarboxylative aldol reaction and decarboxylative Knoevenagel reaction, Green Chem., 11, 1933, 10.1039/b914653a Foresti, 2005, Frequent analytical/experimental problems in lipase-mediated synthesis in solvent-free systems and how to avoid them, Anal. Bioanal. Chem., 381, 1408, 10.1007/s00216-005-3087-6 Foresti, 2005, Solvent-free ethyl oleate synthesis mediated by lipase from Candida antartica B adsorbed on polypropylene powder, Catal. Today, 107–108, 30 Furutani, 1995, Simple screening method for lipase for transesterification in organic solvent, Enzyme Microb. Technol., 17, 1067, 10.1016/0141-0229(95)00035-6 Galaev, 1994, Shielding affinity chromatography, Nat. Biotechnol., 12, 1086, 10.1038/nbt1194-1086 Garcia-Fruitos, 2012, Bacterial inclusion bodies: making gold from waste, Trends Biotechnol., 30, 65, 10.1016/j.tibtech.2011.09.003 Ghaouar, 2010, Concentration regimes and denaturation effects on the conformational changes of α-chymotrypsin by viscosity and dynamic light scattering measurements, Int. J. Biol. Macromol., 47, 425, 10.1016/j.ijbiomac.2010.08.001 Gupta, 1992, Enzyme function in organic solvents, Eur. J. Biochem., 203, 25, 10.1111/j.1432-1033.1992.tb19823.x 2002 Gupta, 1994, Novel technologies in downstream processing, Chem. Ind., 9, 673 Gupta, 1980, Chemical modification of methionines of RNase A with o-benzoquinone, Int. J. Pept. Protein Res., 15, 236, 10.1111/j.1399-3011.1980.tb02572.x 2006 1993 Halling, 1992, Salt hydrates for water activity control with biocatalysts in organic media, Biotechnol. Tech., 6, 271, 10.1007/BF02439357 Halling, 1994, Thermodynamic predictions for biocatalysis in nonconventional media: theory, tests, and recommendations for experimental design and analysis, Enzyme Microb. Technol., 16, 178, 10.1016/0141-0229(94)90043-4 Hudson, 2005, Biocatalysis in semi-aqueous and nearly anhydrous conditions, Curr. Opin. Biotechnol., 16, 637, 10.1016/j.copbio.2005.10.004 Hult, 2007, Enzyme promiscuity: mechanism and applications, Trends Biotechnol., 25, 231, 10.1016/j.tibtech.2007.03.002 Jaeger, 2004, Protein technologies and commercial enzymes: white is the hype-biocatalysts on the move, Curr. Opin. Biotechnol., 15, 269, 10.1016/j.copbio.2004.06.012 Janssen, 2005, Bacterial degradation of xenobiotic compounds: evolution and distribution of novel enzyme activities, Environ. Microbiol., 7, 1868, 10.1111/j.1462-2920.2005.00966.x Jeffery, 1999, Moonlighting proteins, Trends Biochem. Sci., 24, 8, 10.1016/S0968-0004(98)01335-8 Jeffery, 2009, Moonlighting proteins-an update, Mol. BioSyst., 5, 345, 10.1039/b900658n Kapoor, 2012, Lipase promiscuity and its biochemical applications, Process Biochem., 47, 555, 10.1016/j.procbio.2012.01.011 Kapoor, 2012, Decarboxylative Aldol reaction catalysed by lipases and a protease in organic co-solvent mixtures and nearly anhydrous organic solvent media, Biocatal. Biotransform., 30, 399, 10.3109/10242422.2012.703181 Karajanagi, 2004, Structure and function of enzymes adsorbed onto single-walled carbon nanotubes, Langmuir, 20, 11594, 10.1021/la047994h Khersonsky, 2010, Enzyme promiscuity: a mechanistic and evolutionary perspective, Annu. Rev. Biochem., 79, 471, 10.1146/annurev-biochem-030409-143718 Khmelnitsky, 1991, Denaturation capacity: a new quantitative criterion for selection of organic solvents as reaction media in biocatalysis, Eur. J. Biochem., 198, 31, 10.1111/j.1432-1033.1991.tb15983.x Klibanov, 2001, Improving enzymes by using them in organic solvents, Nature, 409, 241, 10.1038/35051719 Kreiner, 2001, Enzyme-coated micro-crystals: a 1-step method for high activity biocatalyst preparation, Chem. Commun., 1096, 10.1039/b100722j Lai, 2010, Lipase-catalysed tandem Knoevenagel condensation and esterification with alcohol cosolvents, Green Chem., 12, 1917, 10.1039/c004547k Lee, 2002, Enzyme activation for non-aqueous media, Curr. Opin. Biotechnol., 13, 376, 10.1016/S0958-1669(02)00337-3 Li, 2008, Biocatalytic promiscuity: the first lipase catalysed asymmetric aldol reaction, Green Chem., 10, 616, 10.1039/b803406k Lichty, 2005, Comparison of affinity tags for protein purification, Protein Expr. Purif., 41, 98, 10.1016/j.pep.2005.01.019 Mahler, 1966 1999 Mattiasson, 1991 2011 Mondal, 2006, The affinity concept in bioseparation: evolving paradigms and expanding range of applications, Biomol. Eng., 23, 59, 10.1016/j.bioeng.2006.01.004 Mondal, 2003, Macro-(affinity ligand) facilitated three phase partitioning (MLFTPP) for purification of glucoamylase and pullulanase using alginate, Protein Expr. Purif., 28, 190, 10.1016/S1046-5928(02)00673-3 Mondal, 2006, Affinity based strategies for protein purification, Anal. Chem., 78, 3499, 10.1021/ac0694066 Mukherjee, 2012, Alpha chymotrypsin coated clusters of Fe3O4 nanoparticles for biocatalysis in low water media, Chem. Cent. J., 6, 1, 10.1186/1752-153X-6-133 Nelson, 1996, Lipase-catalyzed production of biodiesel, J. Am. Oil Chem. Soc., 73, 1191, 10.1007/BF02523383 Niederauer, 1992, Selective precipitation, 47, 159 Nomenclature Committee of IUBMB, 1992 Orlich, 2002, Enzyme catalysis in reverse micelles, Adv. Biochem. Eng. Biotechnol., 75, 185 Park, 2003, Biocatalysis in ionic liquids – advantages beyond green technology, Curr. Opin. Biotechnol., 14, 432, 10.1016/S0958-1669(03)00100-9 Pierpoint, 1996, The extraction of enzymes from plant tissues rich in phenolic compounds, 69 Przybycien, 2004, Alternative bioseparation operations: life beyond packed-bed chromatography, Curr. Opin. Biotechnol., 15, 469, 10.1016/j.copbio.2004.08.008 Purich, 2010 Rather, 2012, Activation of alpha chymotrypsin by three phase partitioning is accompanied by aggregation, PLoS One, 7, e49241, 10.1371/journal.pone.0049241 Reslow, 1988, The influence of water on protease-catalyzed peptide synthesis in acetonitrile/water mixtures, Eur. J. Biochem., 177, 313, 10.1111/j.1432-1033.1988.tb14378.x Rezaei-Ghaleh, 2008, Conformational changes of α-chymotrypsin in a fibrillation-promoting condition: a molecular dynamics study, Biophys. J., 95, 4139, 10.1529/biophysj.108.132407 Richards, 1971, Bovine pancreatic ribonuclease A, 647, 10.1016/S1874-6047(08)60384-4 Roy, 2000, Purification of alkaline phosphatase from chicken intestine by expanded bed affinity chromatography on dye-linked cellulose, Biotechnol. Appl. Biochem., 32, 81, 10.1042/BA20000021 Roy, 2004, Freeze-drying of proteins: some emerging concerns, Biotechnol. Appl. Biochem., 39, 165, 10.1042/BA20030133 Roy, 2004, Obtaining higher transesterification rates with subtilisin Carlsberg in nonaqueous media, Bioorg. Med. Chem. Lett., 14, 887, 10.1016/j.bmcl.2003.12.021 Sadana, 1991 Sadana, 1993, Models of Enzyme Deactivation Schumacher, 2006, Influence of water-miscible organic solvents on kinetics and enantioselectivity of the (R)-specific alcohol dehydrogenase from Lactobacillus revis, Biotechnol. J., 1, 574, 10.1002/biot.200600039 Scopes, 1994 2006 Shah, 2007, Obtaining high transesterification activity for subtilisinin ionic liquids, Biochim. Biophys. Acta. (General Subjects), 1770, 94, 10.1016/j.bbagen.2006.10.004 Shah, 2007, Lipase catalyzed preparation of biodiesel from Jatropha oil in a solvent free system, Process Biochem., 42, 409, 10.1016/j.procbio.2006.09.024 Shah, 2004, Biodiesel preparation by lipase catalyzed transesterification of Jatropha oil, Energy and Fuels, 40, 1077 Shah, 2006, Preparation of cross-linked enzyme aggregates by using bovine serum albumin as a proteic feeder, Anal. Biochem., 351, 207, 10.1016/j.ab.2006.01.028 Sharma, 2002, Macro-(affinity ligand) facilitated three phase partitioning (MLFTPP) for purification of xylanase, Biotechnol. Bioeng., 80, 228, 10.1002/bit.10364 Sheldon, 2005, Cross-linked enzyme aggregates (CLEAs): a novel and versatile method for enzyme immobilization (a review), Biocatal. Biotransform., 23, 141, 10.1080/10242420500183378 Singer, 1963, The properties of proteins in non-aqueous solvents, Adv. Protein Chem., 17, 1, 10.1016/S0065-3233(08)60051-0 Solanki, 2008, Optimising biocatalyst design for obtaining high transesterification activity by α-chymotrypsin in non-aqueous media, Chem. Cent. J., 2, 1 Solanki, 2011, A chemically modified lipase preparation for catalyzing the transesterification reaction in even highly polar organic solvents, Bioorg. Med. Chem. Lett., 21, 2934, 10.1016/j.bmcl.2011.03.059 2000 Teotia, 2001, Free polymeric bioligands in aqueous two phase affinity extractions of microbial xylanases and pullulanase, Protein Expr. Purif., 22, 484, 10.1006/prep.2001.1466 Tipton, 1985 Torres-Salas, 2011, Immobilized biocatalysts: novel approaches and tools for binding enzymes to supports, Adv. Mater., 23, 5275, 10.1002/adma.201101821 Uversky, 2011, Intrinsically disordered proteins from A to Z, Int. J. Biochem. Cell Biol., 43, 1090, 10.1016/j.biocel.2011.04.001 Valivety, 1992, Lipases from different sources vary widely in dependence of catalytic activity on water activity, Biochim. Biophys. Acta: Protein Struct. Mol. Enzymol., 1122, 143, 10.1016/0167-4838(92)90316-6 Vithayathil, 1981, Reaction of methionine with some biologically important o-quinones, Int. J. Biochem. Biophys., 18, 82 2001 2002 Walsh, G., Headon, D.R., 1994. Protein Biotechnology. John Wiley and Sons Ltd., New York. Whitesides, 1983, Enzymes as catalysts in organic synthesis, Aldrichim. Acta, 16, 27