Mass cytometry as a tool in target validation and drug discovery
Tài liệu tham khảo
Bandura, 2009, Mass cytometry: Technique for real time single cell multitarget immunoassay based on inductively coupled plasma time-of-flight mass spectrometry, Analytical Chemistry, 81, 6813, 10.1021/ac901049w
Behbehani, 2012, Single‐cell mass cytometry adapted to measurements of the cell cycle, Cytometry Part A, 81A, 552, 10.1002/cyto.a.22075
Bendall, 2014, Single-cell trajectory detection uncovers progression and regulatory coordination in human B cell development, Cell, 157, 714, 10.1016/j.cell.2014.04.005
Bodenmiller, 2012, Multiplexed mass cytometry profiling of cellular states perturbed by small-molecule regulators, Nature Biotechnology, 30, 858, 10.1038/nbt.2317
Braanker, 2021, How to prepare spectral flow cytometry datasets for high dimensional data analysis: A practical workflow, Frontiers in Immunology, 12
Crowell, H. L., Zanotelli, V. R. T., Chevrier, S., & Robinson, M. D. (2022). CATALYST: Cytometry dATa anALYSis tools. Retrieved from 〈https://github.com/HelenaLC/CATALYST〉.
Finak, 2014, OpenCyto: An open source infrastructure for scalable, robust, reproducible, and automated, end-to-end flow cytometry data analysis, PLoS Computational Biology, 10, 10.1371/journal.pcbi.1003806
Guo, 2020, Mass cytometry analysis reveals a distinct immune environment in peritoneal fluid in endometriosis: A characterisation study, BMC Medicine, 18, 3, 10.1186/s12916-019-1470-y
Hartmann, 2019, Comprehensive immune monitoring of clinical trials to advance human immunotherapy, Cell Reports, 28, 819, 10.1016/j.celrep.2019.06.049
Iyer, 2022, CyTOF® for the masses, Frontiers in Immunology, 13, 10.3389/fimmu.2022.815828
Krieg, 2018, High-dimensional single-cell analysis predicts response to anti-PD-1 immunotherapy, Nature Medicine, 24, 144, 10.1038/nm.4466
Kuett, 2022, Three-dimensional imaging mass cytometry for highly multiplexed molecular and cellular mapping of tissues and the tumor microenvironment, Nature Cancer, 3, 122, 10.1038/s43018-021-00301-w
Lai, 2015, A CD45–based barcoding approach to multiplex mass‐cytometry (CyTOF), Cytometry Part A, 87, 369, 10.1002/cyto.a.22640
Levine, 2015, Data-driven phenotypic dissection of AML reveals progenitor-like cells that correlate with prognosis, Cell, 162, 184, 10.1016/j.cell.2015.05.047
Newell, 2012, Cytometry by time-of-flight shows combinatorial cytokine expression and virus-specific cell niches within a continuum of CD8+ T cell phenotypes, Immunity, 36, 142, 10.1016/j.immuni.2012.01.002
Olsen, 2019, The anatomy of single cell mass cytometry data, Cytometry Part A, 95, 156, 10.1002/cyto.a.23621
Ornatsky, 2008, Study of cell antigens and intracellular DNA by identification of element-containing labels and metallointercalators using inductively coupled plasma mass spectrometry, Analytical Chemistry, 80, 2539, 10.1021/ac702128m
Ornatsky, 2010, Highly multiparametric analysis by mass cytometry, Journal of Immunological Methods, 361, 1, 10.1016/j.jim.2010.07.002
Picot, 2012, Flow cytometry: Retrospective, fundamentals and recent instrumentation, Cytotechnology, 64, 109, 10.1007/s10616-011-9415-0
Plückthun, 2015, Designed Ankyrin Repeat Proteins (DARPins): Binding proteins for research, diagnostics, and therapy, Annual Review of Pharmacology and Toxicology, 55, 489, 10.1146/annurev-pharmtox-010611-134654
R Core Team (2022). R: A language and environment for statistical computing. Retrieved from 〈https://www.R-project.org/〉.
Sahaf, 2019, Biomarkers for immunotherapy of cancer, methods and protocols, Methods in Molecular Biology, 2055, 351, 10.1007/978-1-4939-9773-2_16
Schulz, 2019, Stabilizing antibody cocktails for mass cytometry, Cytometry Part A, 95, 910, 10.1002/cyto.a.23781
Spitzer, 2016, Mass cytometry: Single cells, many features, Cell, 165, 780, 10.1016/j.cell.2016.04.019
Spitzer, 2015, An interactive reference framework for modeling a dynamic immune system, Science (New York, N. Y.), 349, 1259425, 10.1126/science.1259425
Ståhl, 2017, Affibody molecules in biotechnological and medical applications, Trends in Biotechnology, 35, 691, 10.1016/j.tibtech.2017.04.007
StandardBioTools. (2021a). Cell-ID 20-Plex Pd barcoding kit user guide. Retrieved July 5, 2023, from 〈https://www.standardbio.com/asset/692〉.
StandardBioTools. (2021b). Maxpar antibody labeling user guide. Retrieved March 27, 2023, from 〈https://fluidigm.my.salesforce.com/sfc/p/#700000009DAw/a/4u0000019hJc/bT0Mr1sBIRKJDSm14.zvdfrWEJd_QAmX.36RviKDyO8〉.
StandardBioTools. (2022a). Maxpar cell surface staining with fresh fix. Retrieved April 2, 2023, from 〈https://fluidigm.my.salesforce.com/sfc/p/#700000009DAw/a/4u0000019gwY/kAt2wPkiFPIVRiyUicKj_aVUlQjgfgei0lAKG6I2WWY〉.
StandardBioTools. (2022b). Maxpar cytoplasmic/secreted antigen staining with fresh fix. Retrieved July 5, 2023, from 〈https://fluidigm.my.salesforce.com/sfc/p/#700000009DAw/a/4u0000019gwS/aIjEtbnLznwN.KbwUA9R1_PqDEgUs8hUhhCFl2vCOGM〉.
StandardBioTools. (2022c). Maxpar nuclear antigen staining with fresh fix. Retrieved April 5, 2023, from 〈https://fluidigm.my.salesforce.com/sfc/p/#700000009DAw/a/4u0000019gvy/k1.CbKFY8JN7swG2ZVHybPpEZldzMpDAZnJYQvxyrrc〉.
Takahashi, 2017, Mass cytometry panel optimization through the designed distribution of signal interference, Cytometry Part A, 91, 39, 10.1002/cyto.a.22977
Wickham, 2016
Zunder, 2015, A continuous molecular roadmap to iPSC reprogramming through progression analysis of single-cell mass cytometry, Cell Stem Cell, 16, 323, 10.1016/j.stem.2015.01.015