Mapping and pedigree analysis of the gene that controls the easy peel pellicle trait in Japanese chestnut (Castanea crenata Sieb. et Zucc.)

Springer Science and Business Media LLC - Tập 9 - Trang 723-730 - 2013
Sogo Nishio1, Norio Takada1, Toshiya Yamamoto1, Shingo Terakami1, Takeshi Hayashi2, Yutaka Sawamura1, Toshihiro Saito1
1NARO Institute of Fruit Tree Science, Tsukuba, Japan
2NARO, Agricultural Research Center, Tsukuba, Japan

Tóm tắt

The Japanese chestnut (Castanea crenata Sieb. et Zucc.) has a pellicle that is difficult to peel, which increases the labor and cost for removing the pellicle from the nut during processing. Thus, a pellicle that is easier to peel has been an important objective of Japanese chestnut breeding programs. A newly released cultivar (“Porotan”) exhibits a unique, easily peeled pellicle. A previous study indicated that this trait is controlled by recessive gene p, and that several of the ancestors of Porotan (e.g., “Tanzawa” and 550-40) were P/p heterozygotes. Two F1 populations from intra-specific crosses of Japanese chestnut, Tanzawa (P/p) × Porotan (p/p) and 550-40 (P/p) × Tanzawa (P/p), were used for genetic mapping of the gene that controls this characteristic. A total of 11 simple sequence repeat (SSR) markers were obtained that showed significant linkages to the p gene, and genetic linkage maps for the region around the p gene were established. Pedigree analysis was conducted for eight ancestors of Porotan around the pellicle-peeling locus using graphical genotypes based on the 11 SSR loci. The two recessive p alleles and surrounding haplotypes of Porotan were inherited through different intermediate cultivars: one allele was derived from “Otomune” (P/p) via Tanzawa and the other was derived from Otomune via Tanzawa, “Kunimi” (P/p), and breeding line 550-40. A recombination event was found in the flanking region close to the p gene in Kunimi. Molecular identification of the easy peel pellicle trait will lead to marker-assisted selection and will greatly improve Japanese chestnut breeding.

Tài liệu tham khảo

Avanzato D (2009) Following chestnut footprints (Castanea spp.): cultivation and culture, folklore and history, tradition and uses. ISHS, Leuven Barreneche T, Casasoli M, Russell K, Akkak A, Meddour H, Plomion C, Villani F, Kremer A (2004) Comparative mapping between Quercus and Castanea using simple-sequence repeats (SSRs). Theor Appl Genet 108:558–566 Buck EJ, Hadonou M, James CJ, Blakesley D, Russell K (2003) Isolation and characterization of polymorphic microsatellites in European chestnut (Castanea sativa Mill.). Mol Ecol Notes 3:239–241 Casasoli M, Derory J, Morera-Dutrey C, Brendel O, Porth I, Guehl JM, Villani F, Kremer A (2006) Comparison of quantitative trait loci for adaptive traits between oak and chestnut based on an expressed sequence tag consensus map. Genetics 172:533–546 Darvasi A, Soller M (1992) Selective genotyping for determination of linkage between a marker locus and a quantitative trait locus. Theor Appl Genet 85:353–359 de Givry S, Bouchez M, Chabrier P, Milan D, Schiex T (2005) CarthaGene: multipopulation integrated genetic and radiation hybrid mapping. Bioinformatics 21:1703–1704 Fukuoka S, Saka N, Koga H, Ono K, Shimizu T, Ebana K, Hayashi N, Takahashi A, Hirochika H, Okuno K, Yano M (2009) Loss of function of a proline-containing protein confers durable disease resistance in rice. Science 325:998–1001 Gobbin D, Hohl L, Conza L, Jermini M, Gessler C, Conedera M (2007) Microsatellite-based characterization of the Castanea sativa cultivar heritage of southern Switzerland. Genome 50:1089–1103 Grattapaglia D, Sederoff R (1994) Genetic linkage maps of Eucalyptus grandis and Eucalyptus urophylla using a pseudo-testcross: mapping strategy and RAPD markers. Genetics 137:1121–1137 Haldane JBS (1919) The combination of linkage values, and the calculation of distances between the loci of linked factors. J Genet 8:299–309 Inoue E, Ning L, Hara H, Ruan SA, Anzai H (2009) Development of simple sequence repeat markers in Chinese chestnut and their characterization in diverse chestnut cultivars. J Am Soc Hort Sci 134:610–617 Kotobuki K (1994) Chestnut. In: Matsuo T (ed) Collected data of plant genetic resources. Kodansya, Tokyo, pp 1174–1184 (In Japanese) Kubisiak TL, Hebard FV, Nelson CD, Zhang JS, Bernatzky R, Huang H, Anagnostakis SL, Doudrick RL (1997) Molecular mapping of resistance to blight in an interspecific cross in the genus Castanea. Phytopathology 87:751–759 Marinoni D, Akkak A, Bounous G, Edwards KJ, Botta R (2003) Development and characterization of microsatellite markers in Castanea sativa (Mill.). Mol Breed 11:127–136 Miller G, Miller DD, Jaynes RA (1996) Chestnuts. In: Janick J, Moore JN (eds) Fruit breeding. vol. III Nuts. Wiley, New York, pp 99–123 Mohan M, Nair S, Bhagwat A, Krishna TG, Yano M, Bhatia CR, Sasaki T (1997) Genome mapping, molecular markers and marker-assisted selection in crop plants. Mol Breed 3:87–103 Nishio S, Yamamoto T, Terakami S, Sawamura Y, Takada N, Nishitani C, Saito T (2011a) Novel genomic and EST-derived SSR markers in Japanese chestnuts. Sci Hortic 130:838–846 Nishio S, Yamamoto T, Terakami S, Sawamura Y, Takada N, Saito T (2011b) Genetic diversity of Japanese chestnut cultivars assessed by SSR markers. Breed Sci 61:109–120 Pereira-Lorenzo S, Costa RML, Ramos-Cabrer AM, Ribeiro CAM, da Silva MFS, Manzano G, Barreneche T (2010) Variation in grafted European chestnut and hybrids by microsatellites reveals two main origins in the Iberian Peninsula. Tree Genet Genomes 6:701–715 Pereira-Lorenzo S, Ballester A, Corredoira E, Vieitez AM, Agnanostakis S, Costa R, Bounous G, Botta R, Beccaro GL, Kubisiak TL, Conedera M, Krebs P, Yamamoto T, Sawamura Y, Takada N, Gomes-Laranjo J, Ramos-Cabrer AM (2012) Chestnut. In: Badenes ML, Byrne DH (eds) Fruit breeding. Springer, New York, pp 729–769 Saito T, Kotobuki K, Sawamura Y, Abe K, Terai O, Shoda M, Takada N, Sato Y, Hirabayashi T, Sato A, Nishibata T, Kashimura Y, Kozono T, Fukuda H, Kihara K, Suzuki K, Uchida M (2009) New Japanese chestnut cultivar ‘Porotan’. Bull Natl Inst Fruit Tree Sci 9:1–9 (In Japanese) Sato A, Tanaka K, Takada N, Sawamura Y, Hirabayashi T (2010) Comparison of phenolic content of easily removed pellicle of Japanese chestnut ‘Porotan’ with other Japanese and Chinese chestnut cultivars. J Jpn Soc Hort Sci 79:258–262 Shoda M, Takada N, Saito T, Sawamura Y, Kotobuki K (2006) A method for quickly removing pellicles from chestnuts by deep frying cooking oil. Bull Natl Inst Fruit Tree Sci 5:21–27 (In Japanese) Solar A, Podjavorsek A, Stampar F (2005) Phenotypic and genotypic diversity of European chestnut (Castanea sativa mill.) in Slovenia—opportunity for genetic improvement. Genet Resour Crop Evol 52:381–394 Staub JE, Serquen FC, Gupta M (1996) Genetic markers, map construction, and their application in plant breeding. Hortscience 31:729–741 Takada N, Sawamura Y, Nishio S, Saito T (2010) Influence of pollen parents on removability of pellicle and fruit weight of chestnut cultivar ‘Porotan’. Acta Hort 866:239–242 Takada N, Nishio S, Yamada M, Sawamura Y, Sato A, Hirabayashi T, Saito T (2012) Inheritance of the easy-peeling pellicle trait of Japanese chestnut cultivar Porotan. Hortscience 47:845–847 Tanaka K, Kotobuki K (1992) Comparative ease of pellicle removal among Japanese chestnut (Castanea crenata Sieb et. Zucc) and Chinese chestnut (C. mollissima Blume) and their hybrids. J Jpn Soc Hort Sci 60:811–819 Tanaka K, Kotobuki K (1998a) Partial purification, estimated chemical structure, and the adhesive property of castahesion between the pellicle and kernel of chestnut. J Jpn Soc Hort Sci 67:14–20 Tanaka K, Kotobuki K (1998b) The role of phenolic substances in the adhesion between the pellicle and kernel of Japanese chestnut under experimental conditions. J Jpn Soc Hort Sci 67:1–8 Voorrips RE (2002) MapChart: software for the graphical presentation of linkage maps and QTLs. J Hered 93:77–78 Weber JL, May PE (1989) Abundant class of human DNA polymorphisms which can be typed using the polymerase chain-reaction. Am J Hum Genet 44:388–396 Wheeler N, Sederoff R (2009) Role of genomics in the potential restoration of the American chestnut. Tree Genet Genomes 5:181–187 Woodroof JG (1979) Tree nuts: production, processing, products, second edition. Avi, Westport Yamamoto T, Tanaka T, Kotobuki K, Matsuta N, Suzuki M, Hayashi T (2003) Characterization of simple sequence repeats in Japanese chestnut. J Hort Sci Biotechnol 78:197–203