Mapping and Comparative Analysis of QTL for Rice Plant Height Based on Different Sample Sizes within a Single Line in RIL Population

Rice Science - Tập 18 - Trang 265-272 - 2011
Yong-shu LIANG1, Zhi-qiang GAO1, Xi-hong SHEN1, Xiao-deng ZHAN1, Ying-xin ZHANG1, Wei-ming WU1, Li-yong CAO1, Shi-hua CHENG1
1Chinese National Center for Rice Improvement/State Key Laboratory of Rice Biology, China National Rice Research Institute, Hangzhou 310006, China

Tài liệu tham khảo

Cao, 2001, Environment interaction for developmental impacts of epistasis and QTL behavior of plant height in rice (Oryza sativa L.), Theor Appl Genet, 103, 153, 10.1007/s001220100536 Churchill, 1994, Empirical threshold values for quantitative trait mapping, Genetics, 138, 963, 10.1093/genetics/138.3.963 Fan, 2006, GS3, a major QTL for grain length and weight and minor QTL for grain width and thickness in rice, encodes a putative transmembrane protein, Theor Appl Genet, 112, 1164, 10.1007/s00122-006-0218-1 Gao, 2000, Advance on methodology of QTL mapping for plants, Hereditary, 22, 175 Guo, 2003, Dissection of QTLs in two years for important agronomic traits in rice (Oryza sativa L.), Chin J Rice Sci, 17, 211 Jiang, 2008, Analysis of features of 15 successful positional cloning of QTL in rice, Hereditas (Beijing), 30, 1121, 10.3724/SP.J.1005.2008.01121 Kong, 2006, 384 Lan, 2003, Construction of microsatellite linkage map in a DH population, Hereditas (Beijing), 25, 557 Lander, 1987, MAPMAKER: An interactive computer package for constructing primary genetic linkage maps of experimental and natural populations, Genomics, 1, 174, 10.1016/0888-7543(87)90010-3 Li, 2005, Comparative research on four mapping methods of QTLs, Acta Agron Sin, 31, 1473 Li, 1996, Genetic mapping of rice using RFLP markers and a doubled haploid population of a cross between indica and japonica varieties, Acta Bot Sin, 38, 881 Li, 1996, RFLP mapping of major and minor genes for important agronomic characters in rice, Sci China: Ser C, 39, 440 Li, 2002, Comparative mapping of quantitative trait loci for heading date and plant height in cultivated rice (Oryza sativa L.) across environments, Acta Agron Sin, 28, 546 Li, 2003, QTL × environment interactions in rice: I. Heading date and plant height, Theor Appl Genet, 108, 141, 10.1007/s00122-003-1401-2 Lin, 2004, The introduction of major statistical methods and mapping populations of QTL mapping, J Yunnan Agric Univ, 19, 121 Lincoln, 1993, Constructing genetic linkage maps with MAPMAKER/EXP version 3.0: A tutorial and reference manual Liu, 2006, Mapping QTL for biomass yield and its components in rice (Oryza sativa L.), Acta Genet Sin, 33, 607, 10.1016/S0379-4172(06)60090-5 Lu, 1996, Comparative mapping of QTLs for agronomic traits of rice across environments using a doubled haploid population, Theor Appl Genet, 93, 145, 10.1007/s001220050393 Mao, 1999, Analysis of accuracy and influence factor in QTL mapping about agronomic traits in rice (Oryza sativa L.), J Agric Biotechn, 7, 386 McCouch, 1997, Report on QTL nomenclature, Rice Genet Newsl, 14, 11 McCouch, 1988, Molecular mapping of rice chromosomes, Theor Appl Genet, 76, 815, 10.1007/BF00273666 McCouch, 2001, Microsatellite markers in rice: Abundance, diversity, and applications, 117 McCouch, 2002, Development and mapping of 2240 new SSR markers for rice (Oryza sativa L.), DNA Res, 9, 199, 10.1093/dnares/9.6.199 Mei, 2003, Gene actions of QTLs affecting several agronomic traits resolved in a recombinant inbred rice population and two backcross populations, Theor Appl Genet, 17, 89, 10.1007/s00122-003-1192-5 Nonoue, 2008, Detection of quantitative trait loci controlling extremely early heading in rice, Theor Appl Genet, 116, 715, 10.1007/s00122-007-0704-0 Qu, 2008, Mapping QTLs of root morphological trait at different growth stages in rice, Genetica, 133, 187, 10.1007/s10709-007-9199-5 Shen, 2008, Construction of genetic linkage map based on an RIL population derived from super hybrid rice Xieyou 9308, Mol Plant Breeding, 6, 861 Shen, 1992, 84 Takahashi, 2001, Hd6, a rice quantitative trait locus involved in photoperiod sensitivity, encodes a subunit of protein kinase CK2, Proc Natl Acad Sci USA, 98, 7922, 10.1073/pnas.111136798 Temnykh, 2001, Computational and experimental analysis of microsatellites in rice (Oryza sativa. L.): Frequency, length variation, transposon associations, and genetic marker potential, Genome Res, 11, 1441, 10.1101/gr.184001 Tong, 2006, Identification of related QTLs at late developmental stage in rice (Oryza sativa L.) under two nitrogen levels, Acta Genet Sin, 35, 458, 10.1016/S0379-4172(06)60073-5 Wang, 1999, Mapping QTL with epistatic effects and QTL × environment interactions by mixed model approaches, Theor Appl Genet, 99, 1255, 10.1007/s001220051331 Wang Wu, 2005, Significance and prospects of breeding for root system in rice (Oryza sativa L), Chin J Rice Sci, 19, 174 Xiao, 1996, Identification of QTLs affecting traits of agronomic importance in a recombinant inbred population derived from a subspecies rice cross, Theor Appl Genet, 92, 230, 10.1007/BF00223380 Yan, 2004, QTL mapping of root hair and acid exudation traits and their relationship to phosphorus uptake in common bean, Plant & Soil, 265, 17, 10.1007/s11104-005-0693-1 Yang, 2009 Ye, 2005, QTL mapping for yield component traits using (Pei'ai 64s / Nipponbare) F2 population, Acta Agron Sin, 31, 1620 Ye, 2006, Mapping of quantitative traits loci for plant height of rice under different environments, J Sichuan Agric Univ, 24, 20 Yoon, 2006, Mapping quantitative trait loci for yield components and morphological traits in an advanced backcross population between Oryza grandiglumis and the O. sativa japonica cultivar Hwaseongbyeo, Theor Appl Genet, 12, 1052, 10.1007/s00122-006-0207-4 You, 2006, Identification of quantitative trait loci across recombinant inbred lines and test cross populations for traits of agronomic importance in rice, Genetics, 105, 1287, 10.1534/genetics.105.047209 Yuan, 2003, Analysis of additive and A × E interaction effects of QTLs controlling plant height, heading date and panicle number in rice (Oryza sativa L.), Acta Genet Sin, 30, 900 Zeng, 1994, Precision mapping of quantitative trait loci, Genetics, 136, 1457, 10.1093/genetics/136.4.1457 Zhao, 2008, Construction of a genetic map based on ILP markers in rice, Hereditas (Beijing), 30, 225, 10.3724/SP.J.1005.2008.00225 Zhao, 2005, Genetic dissection of early growth characteristics in rice, Sci Agric Sin, 38, 643 Zhang, 2006, QTL analysis of agronomic traits with sequenced rice varieties, Acta Agron Sin, 32, 1503 Zhu, 1988, Mixed model approaches for genetic analysis of quantitative traits, 321 Zhu, 2005, Mapping of QTL controlling root hair length in maize (Zea mays L.) under phosphorus deficiency, Plant & Soil, 270, 299, 10.1007/s11104-004-1697-y