MS-WHIM, new 3D theoretical descriptors derived from molecular surface properties: A comparative 3D QSAR study in a series of steroids

Journal of Computer-Aided Molecular Design - Tập 11 - Trang 79-92 - 1997
Gianpaolo Bravi1, Emanuela Gancia1, Paolo Mascagni1, Monica Pegna1, Roberto Todeschini2, Andrea Zaliani1
1Italfarmaco Research Centre, Cinisello Balsamo (Milan), Italy
2Department of Environmental Sciences, University of Milan, Milan, Italy

Tóm tắt

The recently proposed WHIM (Weighted Holistic Invariant Molecular) approach [Todeschini,R., Lasagni, M. and Marengo, E., J. Chemometrics, 8 (1994) 263] has been applied tomolecular surfaces to derive new 3D theoretical descriptors, called MS-WHIM. To test theirreliability, a 3D QSAR study has been performed on a series of steroids, comparing the MS-WHIM description to both the original WHIM indices and CoMFA fields. The analysis of thestatistical models obtained shows that MS-WHIM descriptors provide meaningful quantitativestructure–activity correlations. Thus, the results obtained agree well with thoseachieved using CoMFA fields. The concise number of indices, the ease of their calculationand their invariance to the coordinate system make MS-WHIM an attractive tool for 3DQSAR studies.

Tài liệu tham khảo

Cramer III, R.D., DePriest, S.A., Patterson, D.E. and Hecht, P., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 443–485. Bradshaw, J., Wynn, E.W., Salt, D.W. and Ford, M.G., In Wermuth, C.G. (Ed.) Trends in QSAR and Molecular Modelling 92 (Proceedings of the 9th European Symposium on Structure–Activity Relationships: QSAR and Molecular Modelling), ESCOM, Leiden, The Netherlands, 1993, pp. 220–224. Broto, P., Moreau, G. and Vandycke, C., Eur. J. Med. Chem.–Chim. Ther., 19 (1984) 66. Clementi, S., Cruciani, G., Riganelli, D., Valigi, R., Costantino, G., Baroni, M. and Wold, S., Pharm. Pharmacol. Lett., 3 (1993) 5. Todeschini, R., Lasagni, M. and Marengo, E., J. Chemometr., 8 (1994) 263. Todeschini, R., Gramatica, P., Provenzani, R. and Marengo, E., Chemometr. Intell. Lab. Syst., 27 (1995) 221. Todeschini, R., Vighi, M., Provenzani, R., Finizio, A. and Gramatica, P., Chemosphere, 8 (1996) 1527. Todeschini, R., Moro, G., Boggia, R., Bonati, L., Cosentino, U., Lasagni, M. and Pitea, D., Chemometr. Intell. Lab. Syst., in press. Cramer III, R.D., Patterson, D.E. and Bunce, J.D., J. Am. Chem. Soc., 110 (1988) 5959. Oprea, T.I., Ciubotariu, D., Sulea, T.I. and Simon, Z., Quant. Struct.–Act. Relatsh., 12 (1993) 21. Good, A.C., So, S. and Richards, W.G., J. Med. Chem., 36 (1993) 433. Good, A.C., Peterson, S.J. and Richards, W.G., J. Med. Chem., 36 (1993) 2929. Jain, N.A., Koile, K. and Chapman, D., J. Med. Chem., 37 (1994) 2315. Dunn, J.F., Nisula, B.C. and Rodbard, D., J. Clin. Endocrin. Metab., 53 (1981) 58. Joliffe, I.T., Principal Components Analysis, Springer, New York, NY, U.S.A., 1986. Box, G.E.P., Hunter, W.G. and Hunter, J.S., Statistics for Experimenters, Wiley, New York, NY, U.S.A., 1978. Clementi, S., Cruciani, G., Baroni, M. and Costantino, G., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 570–572. Wold, S., Albano, C., Dunn III, W.J., Edlund, U., Ebsen, K., Geladi, P., Hellberg, S., Johansson, E., Lindberg, W. and Sjostrom, M., In Kowalsky, B.R. (Ed.) Chemometrics, Reidel, Dordrecht, The Netherlands, 1984, p. 17. Westphal, U., Steroid–Protein Interactions II, Springer, Berlin, Germany, 1986. Roberts, S.M., Symposia in Print: Molecular Recognition in Chemistry and Biochemistry Problems, Royal Society, London, U.K., 1989. Connolly, M., QCPE Bull., 1 (1981) 75. Weiner, P., Langridge, R., Blaney, J.M., Schefer, R. and Kollman, P.A., Proc. Natl. Acad. Sci. USA, 79 (1982) 3754. SYBYL molecular modeling system, available from Tripos Associates, Inc., St. Louis, MO, U.S.A. Baroni, M., Costantino, G., Cruciani, G., Riganelli, D., Valigi, R. and Clementi, S., Quant. Struct.–Act. Relatsh., 12 (1993) 9. Kearsley, S.K. and Smith, G.M., Tetrahedron Comput. Methodol., 3 (1990) 616. Clark, M., Cramer III, R.D. and Van Opdenbosch, N., J. Comput. Chem., 7 (1986) 230. Gasteiger, J. and Marsili, M., Tetrahedron, 36 (1980) 3219. Klebe, G., Mietzner, T. and Weber, F., J. Comput.-Aided Mol. Design, 8 (1994) 751. Wold, S., Technometrics, 20 (1978) 397. Kubinyi, H. and Abraham, U., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 717–728. Manallack, D.T., Ellis, D.D. and Livingstone, D.J., J. Med. Chem., 37 (1994) 3758. Manallack, D.T. and Livingstone, D.J., Med. Chem. Res., 2 (1992) 181. Folkers, G., Merz, A. and Rognan, D., In Kubinyi, H. (Ed.) 3D QSAR in Drug Design: Theory, Methods and Applications, ESCOM, Leiden, The Netherlands, 1993, pp. 583–618. Audry, E., Dubost, J.P., Colleter, J.C. and Dallet, P., Eur. J. Med. Chem.–Chim. Ther., 21 (1986) 71.