LncRNADisease 2.0: an updated database of long non-coding RNA-associated diseases
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Lalevee, 2015, Long noncoding RNAs in human disease: emerging mechanisms and therapeutic strategies, Epigenomics, 7, 877, 10.2217/epi.15.55
Wapinski, 2011, Long noncoding RNAs and human disease, Trends Cell Biol., 21, 354, 10.1016/j.tcb.2011.04.001
Mercer, 2013, Structure and function of long noncoding RNAs in epigenetic regulation, Nat. Struct. Mol. Biol., 20, 300, 10.1038/nsmb.2480
Schmitz, 2016, Mechanisms of long noncoding RNA function in development and disease, Cell. Mol. Life Sci., 73, 2491, 10.1007/s00018-016-2174-5
Chen, 2017, Long non-coding RNAs and complex diseases: from experimental results to computational models, Brief. Bioinform., 18, 558
Chen, 2013, LncRNADisease: a database for long-non-coding RNA-associated diseases, Nucleic Acids Res., 41, D983, 10.1093/nar/gks1099
He, 2018, Statistical analysis of non-coding RNA data, Cancer Lett., 417, 161, 10.1016/j.canlet.2017.12.029
Guo, 2016, Advances in long noncoding RNAs: identification, structure prediction and function annotation, Brief. Functi. Genomics, 15, 38, 10.1093/bfgp/elv022
Kibbe, 2015, Disease Ontology 2015 update: an expanded and updated database of human diseases for linking biomedical knowledge through disease data, Nucleic Acids Res., 43, D1071, 10.1093/nar/gku1011
Bhattacharya, 2011, MeSH: a window into full text for document summarization, Bioinformatics, 27, i120, 10.1093/bioinformatics/btr223
Memczak, 2013, Circular RNAs are a large class of animal RNAs with regulatory potency, Nature, 495, 333, 10.1038/nature11928
Li, 2018, Genome-wide identification of circular RNAs as a novel class of putative biomarkers for an ocular surface disease, Cell. Physiol. Biochem, 47, 1630, 10.1159/000490982
Pan, 2015, PredcircRNA: computational classification of circular RNA from other long non-coding RNA using hybrid features, Mol. Biosyst., 11, 2219, 10.1039/C5MB00214A
Ning, 2016, Lnc2Cancer: a manually curated database of experimentally supported lncRNAs associated with various human cancers, Nucleic Acids Res., 44, D980, 10.1093/nar/gkv1094
Quek, 2015, lncRNAdb v2.0: expanding the reference database for functional long noncoding RNAs, Nucleic Acids Res., 43, D168, 10.1093/nar/gku988
Wang, 2017, NSDNA: a manually curated database of experimentally supported ncRNAs associated with nervous system diseases, Nucleic Acids Res., 45, D902, 10.1093/nar/gkw1038
Chen, 2013, Novel human lncRNA-disease association inference based on lncRNA expression profiles, Bioinformatics, 29, 2617, 10.1093/bioinformatics/btt426
Lan, 2017, LDAP: a web server for lncRNA-disease association prediction, Bioinformatics, 33, 458, 10.1093/bioinformatics/btw639
Sun, 2014, Inferring novel lncRNA-disease associations based on a random walk model of a lncRNA functional similarity network, Mol. Biosyst., 10, 2074, 10.1039/C3MB70608G
Wang, 2016, LncDisease: a sequence based bioinformatics tool for predicting lncRNA-disease associations, Nucleic Acids Res., 44, e90, 10.1093/nar/gkw093
Chou, 2016, miRTarBase 2016: updates to the experimentally validated miRNA-target interactions database, Nucleic Acids Res., 44, D239, 10.1093/nar/gkv1258
Veres, 2015, ComPPI: a cellular compartment-specific database for protein-protein interaction network analysis, Nucleic Acids Res., 43, D485, 10.1093/nar/gku1007
Kuhn, 2014, STITCH 4: integration of protein-chemical interactions with user data, Nucleic Acids Res., 42, D401, 10.1093/nar/gkt1207
Zhou, 2015, Prioritizing candidate disease-related long non-coding RNAs by walking on the heterogeneous lncRNA and disease network, Mol. Biosyst., 11, 760, 10.1039/C4MB00511B
Kozomara, 2014, miRBase: annotating high confidence microRNAs using deep sequencing data, Nucleic Acids Res., 42, D68, 10.1093/nar/gkt1181
Kertesz, 2007, The role of site accessibility in microRNA target recognition, Nat. Genet., 39, 1278, 10.1038/ng2135
Kruger, 2006, RNAhybrid: microRNA target prediction easy, fast and flexible, Nucleic Acids Res., 34, W451, 10.1093/nar/gkl243
