Literature mining method RaJoLink for uncovering relations between biomedical concepts

PubMed. Overview [Online], 2007. Available from: URL:<http://www.ncbi.nlm.nih.gov/>. Fayyad U, Piatetsky-Shapiro G, Smyth P. Knowledge discovery and data mining: towards a unifying framework. In: Proceeding of the second international conference on knowledge discovery and data mining, Oregon: Portland; 1996. p. 82–8. Shortliffe, 1993, The adolescence of AI in medicine: will the field come of age in the ‘90s?, Atif Intell Med, 5, 93, 10.1016/0933-3657(93)90011-Q Swanson, 1986, Undiscovered public knowledge, Libr Q, 56, 103, 10.1086/601720 Swanson, 1990, Medical literature as a potential source of new knowledge, Bull Med Libr Assoc, 78, 29 Belmonte, 2004, Autism and abnormal development of brain connectivity, J Neurosci, 24, 9228, 10.1523/JNEUROSCI.3340-04.2004 Zerhouni EA for National Institutes of Health and National Institute of Mental Health. Congressional Appropriations Committee Report on the State of Autism Research. Department of Health and Human Service, Bethesda MD, 2004. Petrič, 2007, Discovering hidden knowledge from biomedical literature, Informatica, 31, 15 Urbančič, 2007, Literature mining: towards better understanding of autism, 217 Smalheiser, 1998, Using ARROWSMITH: a computer-assisted approach to formulating and assessing scientific hypotheses, Comput Methods Programs Biomed, 57, 149, 10.1016/S0169-2607(98)00033-9 Swanson, 2006, Ranking indirect connections in literature-based discovery: the role of medical subject headings (MeSH), J Am Soc Inf Sci Tech, 57, 1427, 10.1002/asi.20438 Weeber, 2001, Using concepts in literature-based discovery: simulating Swanson’s Raynaud–fish oil and migraine–magnesium discoveries, J Am Soc Inf Sci Tech, 52, 548, 10.1002/asi.1104 Weeber M. Drug discovery as an example of literature-based discovery. In: Džeroski S, Todorovski L, editors. Computational discovery, 2007. p. 290–306. Lindsay, 1999, Literature-based discovery by lexical statistics, J Am Soc Inf Sci, 50, 574, 10.1002/(SICI)1097-4571(1999)50:7<574::AID-ASI3>3.0.CO;2-Q Srinivasan P, Libbus B, Sehgal AK. Mining MEDLINE: postulating a beneficial role for curcumin longa in retinal diseases. In: BioLINK 2004: linking biological literature, ontologies, and databases, Boston, MA. p. 33–40. Hristovski, 2005, Using literature-based discovery to identify disease candidate genes, Int J Med Inform, 74, 289, 10.1016/j.ijmedinf.2004.04.024 Yetisgen-Yildiz, 2006, Using statistical and knowledge-based approaches for literature-based discovery, J Biomed Inform, 39, 600, 10.1016/j.jbi.2005.11.010 Nelson, 2001, Relationships in medical subject headings, 171 Mednick, 1962, The associative basis of the creative process, Psychol Rev, 69, 220, 10.1037/h0048850 Koestler, 1964 Barnett, 1994 Juršič, 2007, Learning ripple down rules for efficient lemmatization, 206 Sebastiani, 2002, Machine learning in automated text categorization, ACM Comput Surv, 34, 1, 10.1145/505282.505283 Grobelnik M, Mladenić D. Extracting human expertise from existing ontologies. In: EU-IST Project IST-2003-506826 SEKT, 2004. Fortuna, 2006, Semi-automatic data-driven ontology construction system, 223 Salton, 1988, Term weighting approaches in automatic text retrieval, Info Process Manage, 24, 513, 10.1016/0306-4573(88)90021-0 Hearst, 1999, Untangling text data mining, 3 Petrič, 2006, Comparison of ontologies built on titles, abstracts and entire texts of articles, 227 Hirtz, 2007, How common are the “common” neurologic disorders?, Neurology, 68, 326, 10.1212/01.wnl.0000252807.38124.a3 American Psychiatric Association. Diagnostic and statistical manual of mental disorders. 4th ed. Text Revision, Washington, DC. 2000. Georgiades, 2007, Structure of the autism symptom phenotype: a proposed multidimensional model, J Am Acad Child Adolesc Psychiatry, 46, 188, 10.1097/01.chi.0000242236.90763.7f Bauman, 2005, Neuroanatomic observations of the brain in autism: a review and future directions, Int J Dev Neurosci, 23, 183, 10.1016/j.ijdevneu.2004.09.006 DeVito, 2007, Evidence for cortical dysfunction in autism: a proton magnetic resonance spectroscopic imaging study, Biol Psychiatry, 61, 465, 10.1016/j.biopsych.2006.07.022 Bethea, 2007, Early pharmacological treatment of autism: a rationale for developmental treatment, Biol Psychiatry, 61, 521, 10.1016/j.biopsych.2006.09.021 Rusnak, 2000, Calcineurin: form and function, Physiol Rev, 80, 1483, 10.1152/physrev.2000.80.4.1483 Qiu, 2006, A fresh look at an ancient receptor family: emerging roles for low density lipoprotein receptors in synaptic plasticity and memory formation, Neurobiol Learn Mem, 85, 16, 10.1016/j.nlm.2005.08.009 Irwin, 2002, Brain structure and the functions of FMR1 protein, 191