Linking species richness, biodiversity and ecosystem function in soil systems

Allen, 1995, Patterns and regulation of mycorrhizal plant and fungal diversity, Plant Soil, 70, 47, 10.1007/BF02183054

Anderson, 1975, The enigma of soil animal species diversity, 51

Anderson, 2000, Food web functioning and ecosystem processes: problems and perceptions of scaling, 3

Andrade, 1998, Bacterial associations with the mycorrhizosphere and hyphosphere of the arbuscular mycorrhizal fungus Glomus mosseae, Plant Soil, 202, 79, 10.1023/A:1004397222241

André, 2002, Soil biodiversity: myth, reality or conning?, Oikos, 96, 3, 10.1034/j.1600-0706.2002.11216.x

Artursson, 2003, Use of bromodeoxyuridine immunocapture to identify active bacteria associated with arbuscular mycorrhizal hyphae, Appl. Environ. Microbiol., 69, 6208, 10.1128/AEM.69.10.6208-6215.2003

Behan-Pelletier, 1993, Biodiversity of Nearctic soil arthropods, Can. Biodiversity, 2, 5

Behan-Pelletier, 1999, Linking soil biodiversity and ecosystem function – The taxonomic dilemma, BioScience, 49, 149, 10.2307/1313540

Bengtsson, 1998, Which species? What kind of diversity? Which ecosystem function? Some problems in studies of relations between biodiversity and ecosystem function, Appl. Soil Ecol., 10, 191, 10.1016/S0929-1393(98)00120-6

Bintrim, 1997, Molecular phylogeny of Archaea from soil, Proc. Nat. Acad. Sci. USA, 94, 277, 10.1073/pnas.94.1.277

Bolger, 2001, The functional value of species biodiversity – a review, Proc. Irish Roy. Acad., 101B, 199

Bouché, 1975, Action de la faune sur les etats de la matiére organique dans les ecosystemes, 157

Bradford, 2002, Impacts of soil faunal community composition on model grassland ecosystems, Science, 298, 615, 10.1126/science.1075805

Buckley, 1998, Phylogenetic analysis of nonthermophilic members of the kingdom Crenarchaeota and their diversity and abundance in soils, Appl. Environ. Microbiol., 64, 4333, 10.1128/AEM.64.11.4333-4339.1998

Coleman, 1994, Compositional analysis of microbial communities, 201

Coleman, 2001, Soil biota, soil systems and processes, Vol. 5, 305

Coleman, 1994, Perspectives on the compositional and functional analysis of soil communities, 261

Curtis, 2002, Estimating prokaryotic diversity and its limits, Proc. Nat. Acad. Sci. USA, 99, 10494, 10.1073/pnas.142680199

Dawson, 2000, Phylogenetic and ecological perspectives on uncultured Crenarchaeota and Korarchaeota

de Ruiter, 1998, Biodiversity in soil ecosystems: the role of energy flow and community stability, Appl. Soil Ecol., 10, 217, 10.1016/S0929-1393(98)00121-8

Diaz, 2001, Vive la différence: plant functional diversity matters to ecosystem processes, Trends Ecol. Evol., 16, 646, 10.1016/S0169-5347(01)02283-2

Dilly, 2004, Bacterial diversity in agricultural soils during litter decomposition, Appl. Environ. Microbiol., 70, 468, 10.1128/AEM.70.1.468-474.2004

Ettema, 2003, Nested spatial biodiversity patterns of nematode genera in a New Zealand forest and pasture soil, Soil Biol. Biochem., 35, 339, 10.1016/S0038-0717(02)00276-6

Fierer, 2003, Variations in microbial community composition through two soil depth profiles, Soil Biol. Biochem., 35, 167, 10.1016/S0038-0717(02)00251-1

Fliessbach, 1994, Effects of water pulses and climatic conditions on microbial biomass kinetics and microbial activity of a Yermosol of the central Negev, Arid Soil Res. Rehabil., 8, 353, 10.1080/15324989409381409

Foster, 1994, Microorganisms and soil aggregates, 144

Foster, 1991, Bacteria-grazing amoebae in situ in the rhizosphere, Biol. Fertil. Soils, 11, 83, 10.1007/BF00336368

Freckman, D.W., 1994. Life in the Soil/Soil Biodiversity: Its importance to ecosystem processes. Report on a workshop held at The Natural History Museum, London. NREL, Colorado State University, Ft. Collins.

Garbaye, 1991, Biological interactions in the mycorrhizosphere, Experientia, 47, 370, 10.1007/BF01972079

Gaudinski, 2000, Soil carbon cycling in a temperate forest: radiocarbon-based estimates of residence times, sequestration rates and partitioning of fluxes, Biogeochemistry, 51, 33, 10.1023/A:1006301010014

Griffiths, 2000, Ecosystem response of pasture soil communities to fumigation-induced microbial diversity reductions: an examination of the biodiversity-ecosystem function relationship, Oikos, 90, 279, 10.1034/j.1600-0706.2000.900208.x

Griffiths, 2001, An examination of the biodiversity-ecosystem function relationship in arable soil microbial communities, Soil Biol. Biochem., 33, 1713, 10.1016/S0038-0717(01)00094-3

Hansen, 2000, Diversity in the decomposing landscape, 203

Hartnett, 1999, Mycorrhizae influence plant community structure and diversity in tallgrass prairie, Ecology, 80, 1187, 10.1890/0012-9658(1999)080[1187:MIPCSA]2.0.CO;2

Hawksworth, 1991, The fungal dimension of biodiversity: Magnitude, significance and conservation, Mycol. Res., 95, 641, 10.1016/S0953-7562(09)80810-1

Hawksworth, 2001, The magnitude of fungal diversity: the 1.5 millions species estimate revisited, Mycol. Res., 105, 1422, 10.1017/S0953756201004725

Hölldobler, 1990

Hooper, 2000, Interactions between aboveground and belowground biodiversity in terrestrial ecosystems: Patterns, Mechanisms, and Feedbacks, BioScience, 50, 1049, 10.1641/0006-3568(2000)050[1049:IBAABB]2.0.CO;2

Hugenholtz, 1998, Impact of culture-independent studies on the emerging phylogenetic view of bacterial diversity, J. Bacteriol., 180, 4765, 10.1128/JB.180.18.4765-4774.1998

Hunt, 2002, Modelling the effects of loss of soil biodiversity on ecosystem function, Global Change Biol., 8, 33, 10.1046/j.1365-2486.2002.00425.x

Hunt, 1987, The detrital food web in a shortgrass prairie, Biol. Fertil. Soils, 3, 57, 10.1007/BF00260580

Hutchinson, 1957, Concluding remarks, Vol. 22, 415

Jastrow, 1998, Contributions of interacting biological mechanisms to soil aggregate stabilization in restored prairie, Soil. Biol. Biochem., 30, 905, 10.1016/S0038-0717(97)00207-1

Joseph, 2003, Laboratory cultivation of widespread and previously uncultured soil bacteria, Appl. Environ. Microbiol., 69, 7210, 10.1128/AEM.69.12.7210-7215.2003

Jurgens, 1997, Novel group within the kingdom Crenarchaeota from boreal forest soil, Appl. Environ. Microbiol., 63, 803, 10.1128/AEM.63.2.803-805.1997

Keller, 2004, Tapping into microbial diversity, Nature Reviews/Microbiol, 2, 141, 10.1038/nrmicro819

Kent, 2002, Microbial communities and their interactions in soil and rhizosphere systems, Ann. Rev. Microbiol., 56, 211, 10.1146/annurev.micro.56.012302.161120

Keswani, 2001, Relationship of 16S rRNA sequence similarity to DNA hybridization in prokaryotes, Int. J. Syst. Evol. Microbiol., 51, 667, 10.1099/00207713-51-2-667

Lamoncha, 1998, Oribatid mite diversity along an elevation gradient in a southeastern Appalachian forest, Pedobiologia, 42, 43, 10.1016/S0031-4056(24)00390-1

Lane, 1991, 16S/23S rRNA sequencing, 115

Lee, 1985

1990

Maraun, 2003, Adding to “the enigma of soil animal diversity”: fungal feeders and saprophagous soil invertebrates prefer similar food substrates, Eur. J. Soil Biol., 39, 85, 10.1016/S1164-5563(03)00006-2

Moore, 2000, Invertebrates in detrital food webs along gradients of productivity, 161

Moore, 1993, Influence of productivity on the stability of real and model ecosystems, Science, 261, 906, 10.1126/science.261.5123.906

Nadelhoffer, 1985, Fine roots, net primary production, and soil nitrogen availability: a new hypothesis, Ecology, 66, 1377, 10.2307/1939190

Nadkarni, 2002, Comparison of arboreal and terrestrial soil characteristics in a lower montane forest, Monteverde, Costa Rica, Pedobiologia, 46, 24, 10.1078/0031-4056-00110

Nicol, 2003, Spatial analysis of archaeal community structure in grassland soil, Appl. Environ. Microbiol., 69, 7420, 10.1128/AEM.69.12.7420-7429.2003

Nordén, 2004, Relative importance of coarse and fine woody debris for the diversity of wood-inhabiting fungi in temperate broadleaf forests, Biol. Conservation, 117, 1, 10.1016/S0006-3207(03)00235-0

Noti, 2003, Diversity of soil oribatid mites (Acari: Oribatida) from High Katanga (Democratic Republic of Congo): a multiscale and multifactor approach, Biodiversity Conserv., 12, 767, 10.1023/A:1022474510390

Ogram, 2002, Methods of soil microbial community analysis, 554

Pace, 1999, Microbial ecology and diversity, ASM News, 65, 328

Ponge, 2003, Humus forms in terrestrial ecosystems: a framework to diversity, Soil Biol. Biochem., 35, 935, 10.1016/S0038-0717(03)00149-4

Porazinska, 2003, Relationships at the aboveground-belowground interface: plants, soil biota, and soil processes, Ecol. Monogr., 73, 377, 10.1890/0012-9615(2003)073[0377:RATAIP]2.0.CO;2

Prosser, 2002, Molecular and functional diversity in soil micro-organisms, Plant & Soil, 244, 9, 10.1023/A:1020208100281

Rondon, M.R., 15 coauthors 2000. Cloning the Soil Metagenome: a strategy for accessing the genetic and functional diversity of uncultured microorganisms. Appl. Environ. Microbiol. 66, 2541–2547.

Schloss, 2004, Status of the microbial census, Microbio. Mol. Biol. Rev., 68, 686, 10.1128/MMBR.68.4.686-691.2004

Smith, 1999, Interacting influence of mycorrhizal symbiosis and competition on plant diversity in tallgrass prairie, Oecologia, 121, 574, 10.1007/s004420050964

Stevenson, 2004, New strategies for the cultivation and detection of yet-uncultured microbes, Appl. Environ. Microbiol., 70, 4748, 10.1128/AEM.70.8.4748-4755.2004

Stout, 1981, Chemistry and turnover of naturally occurring resistant organic compounds in soil, vol. 5, 1

Tiedje, 2001, Soil teeming with life: new frontiers for soil science, 393

Torsvik, 2002, Microbial diversity and function in soil: from genes to ecosystems, Curr. Opin. Microbiol., 5, 240, 10.1016/S1369-5274(02)00324-7

Treonis, 1999, Invertebrate biodiversity in Antarctic Dry Valley soils and sediments, Ecosystems, 2, 483, 10.1007/s100219900096

Treonis, 2004, Identification of groups of metabolically-active rhizosphere microorganisms by stable isotope probing of PLFAs, Soil Biol. Biochem., 36, 533, 10.1016/j.soilbio.2003.10.015

van der Heijden, 1998, Mycorrhizal fungal diversity determines plant biodiversity, ecosystem variability and productivity, Nature, 396, 69, 10.1038/23932

Wall, 1999, Interactions Underground: soil biodiversity, mutualism, and ecosystem processes, Bioscience, 49, 109, 10.2307/1313536

Wall, 1999, Controls on soil biodiversity: insights from extreme environments, Appl. Soil Ecol., 13, 137, 10.1016/S0929-1393(99)00029-3

Walter, 2000

Wardle, 2002

Wardle, 1999, Plant removals in perennial grassland: vegetation dynamics, decomposers, soil biodiversity, and ecosystem properties, Ecol. Monogr., 69, 535, 10.1890/0012-9615(1999)069[0535:PRIPGV]2.0.CO;2

Whitman, 1998, Perspective: Prokaryotes: the unseen majority, Proc. Natl. Acad. Sci. USA, 95, 6578, 10.1073/pnas.95.12.6578

Wilson, 1994, Molecular markers as tools to study the ecology of microorganisms, 149