Linking root phenomics, nutrient acquisition and utilisation in amaranthus with thermochemical organic fertilizer from biowaste

Adeleke, 2017, Origins, roles and fate of organic acids in soils: a review, South Afr. J. Bot., 108, 393, 10.1016/j.sajb.2016.09.002 Agbede, 2019, Nfluence of five years of tillage and poultry manure application on soil properties and ginger (Ziginber officinale Roscoe) productivity, J. Crop Sci. Biotechnol., 22, 91, 10.1007/s12892-018-0155-0 Azevedo, 2019, Urban solid waste management in developing countries from the sustainable supply chain management perspective: a case study of Brazil's largest slum, J. Clean. Prod., 233, 1377, 10.1016/j.jclepro.2019.06.162 Backer, 2018, Plant growth-promoting rhizobacteria: context, mechanisms of action, and roadmap to commercialization of biostimulants for sustainable agriculture, Front. Plant Sci., 9, 1473, 10.3389/fpls.2018.01473 Barber, 1995 Bauwa, 2016, Soil fertility gradients and production constraints for coffee and banana on volcanic mountain slopes in the East African Rift: a case study of Mt, Elgon. Agric. Ecosyst. Environ., 231, 166, 10.1016/j.agee.2016.06.036 Berendsen, 2012, The rhizosphere microbiome and plant health, Trends Plant Sci., 17, 478, 10.1016/j.tplants.2012.04.001 Bontpart, 2020, Affordable and robust phenotyping framework to analyse root system architecture of soil‐grown plants, Plant J., 103, 2330, 10.1111/tpj.14877 Bowsher, 2016, Evolutionary divergences in root system morphology, allocation, and nitrogen uptake in species from high- versus low-fertility soils, Funct. Plant Biol., 43, 129, 10.1071/FP15162 Canellas, 2002, Humic acids isolated from earthworm compost enhance root elongation, lateral root emergence, and plasma membrane H+-ATPase activity in maize roots, Plant Physiol., 130, 1951, 10.1104/pp.007088 Casida, 1964, Soil dehydrogenase activity, Soil Sci., 98, 371, 10.1097/00010694-196412000-00004 Cassman, 2002, Agroecosystems, nitrogen-use efficiency, and nitrogen management, AMBIO: J. Hum. Environ., 31, 132, 10.1579/0044-7447-31.2.132 Cerda, 2018, Composting of food wastes: status and challenges, Bioresour. Technol., 248, 57, 10.1016/j.biortech.2017.06.133 Chakraborty, 2020, Exploration of strategies to increase the nitrogen and phosphate content of solid waste landfill soil, Environ. Monit. Assess., 192, 1, 10.1007/s10661-020-8200-y Chan, 2016, Reducing nitrogen loss and salinity during ‘struvite’food waste composting by zeolite amendment, Bioresour. Technol., 200, 838, 10.1016/j.biortech.2015.10.093 Chen, 2019, Regulation of priming effect by soil organic matter stability over a broad geographic scale, Nat. Commun., 10, 5112, 10.1038/s41467-019-13119-z Dessaux, 2016, Engineering the rhizosphere, Trends Plant Sci., 21, 266, 10.1016/j.tplants.2016.01.002 Edwards, 2015, Structure, variation, and assembly of the root-associated microbiomes of rice, Proc. Natl. Acad. Sci. Unit. States Am., 112, 911, 10.1073/pnas.1414592112 Eldridge, 2017, Plant available N supply and recalcitrant C from organic soil amendments applied to a clay loam soil have correlations with amendment chemical composition, Geoderma, 294, 50, 10.1016/j.geoderma.2017.01.015 Erana, 2019, Effect of agro industrial wastes compost on soil health and onion yields improvements: study at field condition, Int. J. Recycl. Org. Waste Agric., 8, 161, 10.1007/s40093-019-0286-2 Erktan, 2018, Frontiers in root ecology: recent advances and future challenges, Plant Soil, 424, 1, 10.1007/s11104-018-3618-5 Feng, 2021, Chemotaxis of beneficial rhizobacteria to root exudates: the first step towards root–microbe rhizosphere interactions, Int. J. Mol. Sci., 22, 665, 10.3390/ijms22136655 Fitter, 1991, Architectural analysis of plant root systems 1. Architectural correlates of exploitation efficiency, New Phytol., 118, 375, 10.1111/j.1469-8137.1991.tb00018.x Frias, 1996, A major isoform of the maize plasma membrane H+-ATPase: characterization and induction by auxin in coleoptiles, Plant Cell, 8, 1533 Ghosh, 2020, Soil enzymes and microbial elemental stoichiometry as bio-indicators of soil quality in diverse cropping systems and nutrient management practices of Indian Vertisols, Appl. Soil Ecol., 1, 145 Giusquiani, 1988, Chemical properties of soils amended with compost of urban waste, Plant Soil, 109, 73, 10.1007/BF02197582 Gopinath, 2021, grapesAgri1: Collection of Shiny Apps for Data Analysis in Agriculture, J. Open Source Software, 6, 3437, 10.21105/joss.03437 Guo, 2019, Maize with fewer nodal roots allocates mass to more lateral and deep roots that improve nitrogen uptake and shoot growth, J. Exp. Bot., 70, 5299, 10.1093/jxb/erz258 Hager, 1991, Serrano R. Auxin-induced exocytosis and the rapid synthesis of a high-turnover pool of plasma-membrane H+-ATPase, Planta, 185, 527, 10.1007/BF00202963 Hailu, 2019, Municipal solid waste source identification, characterization and physical composition analysis, case study Wolkite town, Ethiopia, Am. J. Environ. Protect., 8, 48, 10.11648/j.ajep.20190802.12 Haling, 2018, Differences in nutrient foraging among Trifolium subterraneum cultivars deliver improved P-acquisition efficiency, Plant Soil, 424, 539, 10.1007/s11104-017-3511-7 Hargreaves, 2008, A review of the use of composted municipal solid waste in agriculture, Agric. Ecosyst. Environ., 123, 1, 10.1016/j.agee.2007.07.004 Hesse, 1971, 520 Hong, 2018, Which root traits determine nitrogen uptake by alpine plant species on the Tibetan Plateau?, Plant Soil, 424, 63, 10.1007/s11104-017-3434-3 Hossain, 2019, Microbial and enzymatic activity as influenced by existing cropping pattern in the soils of Ganges flood plain, Plant Sci. Today, 6, 309, 10.14719/pst.2019.6.3.545 Jacob, 2018, 110 Jacoby, 2017, The role of soil micro organismsin plant mineral nutrition-current knowledge and future directions, Front. Plant Sci., 8, 1617, 10.3389/fpls.2017.01617 Jayakrishna, 2016, Standardisation of growth medium based on thermo chemical digest produced from degradable solid waste by rapid conversion technology, Int. J. Appl. Pure Sci. Agric., 2, 76 Jindo, 2012, Root growth promotion by humic acids from composted and non-composted urban organic wastes, Plant Soil, 353, 209, 10.1007/s11104-011-1024-3 Kleinert, 2018, Morphological and symbiotic root modifications for mineral acquisition from nutrient-poor soils, 85 Kuzyakov, 2013, Competition between roots and microorganisms for nitrogen: mechanisms and ecological relevance, New Phytol., 198, 656, 10.1111/nph.12235 Laliberté, 2015, Phosphorus limitation, soil‐borne pathogens and the coexistence of plant species in hyperdiverse forests and shrublands, New Phytol., 206, 507, 10.1111/nph.13203 Leite, 2017, Organic nitrogen rearranges both structure and activity of the soil-borne microbial seed bank, Sci. Rep., 7, 42634, 10.1038/srep42634 Leno, 2017, 106p Leno, 2017, Biometric and yield response of banana to organic fertilizer produced by rapid decomposition of solid wastes, Trends Biosci, 10, 9284 Leno, 2018, Micronutrient dynamics on addition of a rapid organic fertilizer produced from degradable waste in banana, Int. J. Curr. Microbiol. App. Sci., 7, 1095, 10.20546/ijcmas.2018.701.132 Leno, 2019, Nutrient release from a rapid organic fertilizer and growth and yield responses in banana, vol. 1, 145 Leno, 2021, Physicochemical and nutrient release characteristics of a thermochemical organic fertilizer produced from degradable solid waste and its effect on productivity of banana, Commun. Soil Sci. Plant Anal., 1–16 Leno, 2021, Thermochemical digestate fertilizer from solid waste: characterization, labile carbon dynamics, dehydrogenase activity, water holding capacity and biomass allocation in banana, Waste Manag., 123, 1, 10.1016/j.wasman.2021.01.002 Leno, 2017, Nutrient availability from an organic fertilizer produced by chemical decomposition of solid wastes in relation to dry matter production in banana, Adv. Res., 13, 1, 10.9734/AIR/2017/38428 Leno, 2016, Fertility evaluation and manurial effect of organic manure produced from degradable solid waste by rapid conversion technology, Adv. Life Sci., 5, 4433 Lim, 2016, Sustainability of using composting and vermicomposting technologies for organic solid waste biotransformation: recent overview, greenhouse gases emissions and economic analysis, J. Clean. Prod., 111, 262, 10.1016/j.jclepro.2015.08.083 Lupwayi, 2019, Linking soil microbial biomass and enzyme activities to long-term manure applications and their nonlinear legacy, Pedobiologia, 74, 34, 10.1016/j.pedobi.2019.04.001 Lynch, 2013, Steep, cheap and deep: an ideotype to optimize water and N acquisition by maize root systems, Ann. Bot., 112, 347, 10.1093/aob/mcs293 Lynch, 2019, Root phenotypes for improved nutrient capture: an underexploited opportunity for global agriculture, New Phytol., 223, 548, 10.1111/nph.15738 Ma, 2020, Farmyard manure applications stimulate soil carbon and nitrogen cycling by boosting microbial biomass rather than changing its community composition, Soil Biol. Biochem., 26, 107760, 10.1016/j.soilbio.2020.107760 Maerere, 2001, Comparative effectiveness of animal manures on soil chemical properties, yield and root growth of amaranthus (Amaranthus cruentus L.), Afr. J. Sci. Technol., 1, 14 Margalef, 2017, Global patterns of phosphatase activity in natural soils, Sci. Rep., 7, 1, 10.1038/s41598-017-01418-8 Massoumi, 1963, A rapid method for determining sulphate in water extracts of soils, Analyst, 88, 321, 10.1039/an9638800321 Mohamed, 2018, Sewage sludge used as organic manure in Moroccan sunflower culture: effects on certain soil properties, growth and yield components, Sci. Total Environ., 627, 681, 10.1016/j.scitotenv.2018.01.258 Nair, 2009, Efficacy of acibenzolar-S-methyl and rhizobacteria for the management of foliar blight disease of amaranth, J. Trop. Agric., 47, 43 Naramabuye, 2006, Effect of organic amendments on soil pH and Al solubility and use of laboratory indices to predict their liming effect, Soil Sci., 171, 754, 10.1097/01.ss.0000228366.17459.19 Nuccio, 2016, Climate and edaphic controllers influence rhizosphere community assembly for a wild annual grass, Ecol., 97, 1307, 10.1890/15-0882.1 Onet, 2019, Biological indicators for evaluating soil quality improvement in a soil degraded by erosion processes, J. Soils Sediments, 19, 2393, 10.1007/s11368-018-02236-9 Padilla, 2013, Root plasticity maintains growth of temperate grassland species under pulsed water supply, Plant Soil, 369, 377, 10.1007/s11104-012-1584-x Peng, 2019, Sustainable management of digestate from the organic fraction of municipal solid waste and food waste under the concepts of back to earth alternatives and circular economy, Waste Biomass Valori, 10, 465, 10.1007/s12649-017-0071-2 Pii, 2016, The interaction between iron nutrition, plant species and soil type shapes the rhizosphere microbiome, Plant Physiol. Biochem., 99, 39, 10.1016/j.plaphy.2015.12.002 Rabbi, 2017, Root architectural responses of wheat cultivars to localised phosphorus application are phenotypically similar, J. Plant Nutr. Soil Sci., 180, 169, 10.1002/jpln.201600503 Reddy, 2015, Nutrient mass balances and leaching losses from a farmyard manure pit in Madhya Pradesh, J. Indian Soc. Soil Sci., 63, 64, 10.5958/0974-0228.2015.00008.0 Ribaudo, 2011, Nitrogen in agricultural systems: Implications for conservation policy, USDA-ERS Econ. Res. Rep., 127 Richardson, 2011, Plant and microbial strategies to improve the phosphorus efficiency of agriculture, Plant Soil, 349, 121, 10.1007/s11104-011-0950-4 Romheld, 2010, Research on potassium in agriculture: needs and prospects, Plant Soil, 335, 155, 10.1007/s11104-010-0520-1 Rukshana, 2011, Model organic compounds differ in their effects on pH changes of two soils differing in initial pH, Biol. Fertil., 47, 51, 10.1007/s00374-010-0498-0 Ryan, 2009, Rhizosphere engineering and management for sustainable agriculture, Plant Soil, 321, 363, 10.1007/s11104-009-0001-6 Saldarriaga, 2019, Selecting monitoring variables in the manual composting of municipal solid waste based on principal component analysis, Waste Biomass Valori, 10, 1811, 10.1007/s12649-018-0208-y Scaglia, 2016, Investigating organic molecules responsible of auxin-like activity of humic acid fraction extracted from vermicompost, Sci. Total Environ., 562, 289, 10.1016/j.scitotenv.2016.03.212 Shahzad, 2019, Relative efficacy of organic substrates on maize root proliferation under water stress, Biosci. J., 35, 101, 10.14393/BJ-v35n1a2019-42102 Spohn, 2013, Phosphorus mineralization can be driven by microbial need for carbon, Soil Biol. Biochem., 61, 69, 10.1016/j.soilbio.2013.02.013 Sudharmaidevi, 2017, Rapid production of organic fertilizer from degradable waste by thermochemical processing, Int. J. Recycl. Org. Waste Agric., 6, 1, 10.1007/s40093-016-0147-1 Sukholthaman, 2016, A system dynamics model to evaluate effects of source separation of municipal solid waste management: a case of Bangkok, Thailand, Waste Manag., 52, 50, 10.1016/j.wasman.2016.03.026 Tabatabai, 1983, Sulfur, 501 Tian, 2020, The role of rhizodeposits in shaping rhizomicrobiome, Environ. Microbiol. Repo., 12, 160, 10.1111/1758-2229.12816 Timonin, 1940, The interaction of higher plants and soil microorganisms - microbial population of rhizosphere of seedlings of certain cultivated planted, Can. J. Res., 18, 307, 10.1139/cjr40c-031 Tiquia, 2010, Reduction of compost phytotoxicity during the process of decomposition, Chemosphere, 79, 506, 10.1016/j.chemosphere.2010.02.040 Trevisan, 2010, Humic substances biological activity at the plant-soil interface: from environmental aspects to molecular factors, Plant Signal. Behav., 5, 635, 10.4161/psb.5.6.11211 Vance, 1987, An extraction method for measuring soil microbial biomass carbon, Soil Boil. Biochem., 19, 703, 10.1016/0038-0717(87)90052-6 Wendling, 2016, Influence of root and leaf traits on the uptake of nutrients in cover crops, Plant Soil, 409, 419, 10.1007/s11104-016-2974-2 White, 2013, Improving potassium acquisition and utilisation by crop plants, J. Plant Nutr. Soil Sci., 176, 305, 10.1002/jpln.201200121 Wintermans, 2016, Natural genetic variation in Arabidopsis for responsiveness to plant growth-promoting rhizo bacteria, Plant Mol. Biol., 90, 623, 10.1007/s11103-016-0442-2 Wissuwa, 2003, How do plants achieve tolerance to phosphorus deficiency? Small causes with big effects, Plant Physiol., 133, 1947, 10.1104/pp.103.029306 Xiao, 2017, Interactions of plant growth-promoting rhizobacteria and soil factors in two leguminous plants, Appl. Microbiol. Biotechnol., 101, 8485, 10.1007/s00253-017-8550-8 Yanardağ, 2017, Native soil organic matter conditions the response of microbial communities to organic inputs with different stability, Geoderma, 295, 1, 10.1016/j.geoderma.2017.02.008 Yang, 2019, Metagenomic insights into effects of wheat straw compost fertiliser application on microbial community composition and function in tobacco rhizosphere soil, Sci. Rep., 9, 6168, 10.1038/s41598-019-42667-z Yashaswini, 2021, Endospore-forming endorhizosphere bacteria from Amaranthus spp. improve plant growth and suppress leaf blight (Rhizoctonia solani Kühn) disease of Amaranthus tricolor, L. Rhizosphere., 100387, 10.1016/j.rhisph.2021.100387 Zandonadi, 2019, Alkamides: a new class of plant growth regulators linked to humic acid bioactivity, Chem. Biol. Technol. Agric., 6, 1, 10.1186/s40538-019-0161-4 Zhang, 2015, Engineering the plant rhizosphere, Curr. Opin. Biotechnol., 32, 136, 10.1016/j.copbio.2014.12.006 Zhang, 2020, Benefits of organic manure combined with biochar amendments to cotton root growth and yield under continuous cropping systems in Xinjiang, China, Sci. Rep., 10, 1 Zhang, 2019, Priming effects of soil organic matter decomposition with addition of different carbon substrates, J. Soils Sediments, 19, 1171, 10.1007/s11368-018-2103-3 Gopinath, P. P., Parsad, R., Joseph, B., Adarsh, V. S., 2020. GRAPES: General Rshiny Based Analysis Platform Empowered by Statistics https://www.kaugrapes.com/home version1.0.0. doi: 10.5281/zenodo.4923220.