Kinetic and thermodynamic characterization of dUTP hydrolysis by Plasmodium falciparum dUTPase
Tài liệu tham khảo
Todd, 2001, Enzyme kinetics determined using calorimetry: a general assay for enzyme activity?, Anal. Biochem., 296, 179, 10.1006/abio.2001.5218
Lonhienne, 2001, Enzyme activity determination on macromolecular substrates by isothermal titration calorimetry: application to mesophilic and psychrophilic chitinases, Biochim. Biophys. Acta, 1545, 349, 10.1016/S0167-4838(00)00296-X
Bianconi, 2003, Calorimetric determination of thermodynamic parameters of reaction reveals different enthalpic compensations of the yeast hexokinase isozymes, J. Biol. Chem., 278, 18709, 10.1074/jbc.M211103200
Wiggers, 2007, Effects of organic solvents on the enzyme activity of Trypanosoma cruzi glyceraldehyde-3-phosphate dehydrogenase in calorimetric assays, Anal. Biochem., 370, 107, 10.1016/j.ab.2007.06.042
Shlomai, 1978, Deoxyuridine triphosphatase of Escherichia coli. Purification, properties, and use as a reagent to reduce uracil incorporation into DNA, J. Biol. Chem., 253, 3305, 10.1016/S0021-9258(17)40837-4
Larsson, 1996, Kinetic characterization of dUTPase from Escherichia coli, J. Biol. Chem., 271, 24010, 10.1074/jbc.271.39.24010
Gadsden, 1993, dUTP pyrophosphatase is an essential enzyme in Saccharomyces cerevisiae, EMBO. J., 12, 4425, 10.1002/j.1460-2075.1993.tb06127.x
Kornberg, 1991
Tye, 1977, Excision repair of uracil incorporated in DNA as a result of a defect in dUTPase, J. Mol. Biol., 117, 293, 10.1016/0022-2836(77)90128-0
Zalud, 1995, Inhibition of the proliferation of human cancer cells in-vitro by substrate-analogous inhibitors of dUTPase, Adv. Exp. Med. Biol., 370, 135, 10.1007/978-1-4615-2584-4_31
Bertani, 1961, Synthesis of pyrimidine deoxyribonucleoside diphosphates with enzymes from Escherichia coli, J. Biol. Chem., 236, 67, 10.1016/S0021-9258(19)61744-8
Whittingham, 2005, dUTPase as a platform for antimalarial drug design: structural basis for the selectivity of a class of nucleoside inhibitors, Structure, 13, 329, 10.1016/j.str.2004.11.015
Mol, 1996, Human dUTP pyrophosphatase: uracil recognition by a beta hairpin and active sites formed by three separate subunits, Structure, 4, 1077, 10.1016/S0969-2126(96)00114-1
Chan, 2004, Crystal structure of the Mycobacterium tuberculosis dUTPase: insights into the catalytic mechanism, J. Mol. Biol., 341, 503, 10.1016/j.jmb.2004.06.028
Prassad, 1996, Crystal structure odd UTP pyrophosphatase from feline immunodeficiency virus, Protein Sci., 5, 2429, 10.1002/pro.5560051205
Dauter, 1999, Crystal structure of dUTPase from equine infectious anaemia virus; active site metal binding in a substrate analogue complex, J. Mol. Biol., 285, 655, 10.1006/jmbi.1998.2332
Tóth, 2007, Kinetic mechanism of human dUTPase, an essential nucleotide pyrophosphatase enzyme, J. Biol. Chem., 282, 33572, 10.1074/jbc.M706230200
Bajaj, 2007, Purification, crystallization and preliminary crystallographic analysis of deoxyuridine triphosphate nucleotidohydrolase from Arabidopsis thaliana, Acta Crystallogr., Sect F: Struct. Biol. Cryst. Commun., 63, 409, 10.1107/S1744309107016004
Samal, 2007, Structures of vaccinia virus dUTPase and its nucleotide complexes, Acta Crystallogr., Sect. D: Biol. Crystallogr., 63, 580, 10.1107/S0907444907007871
Nguyen, 2005, Deoxyuridine triphosphate nucleotidohydrolase as a potential antiparasitic drug target, J. Med. Chem., 48, 5942, 10.1021/jm050111e
Nguyen, 2006, Acyclic nucleoside analogues as inhibitors of Plasmodium falciparum dUTPase, J. Med. Chem., 49, 4183, 10.1021/jm060126s
Bradford, 1976, A rapid and sensitive method for the quantitation of microgram quantities of protein utilizing the principle of protein-dye binding, Anal. Biochem., 72, 248, 10.1016/0003-2697(76)90527-3
Segel, 1975, Kinetics of unireactant enzymes, 54
Hidalgo-Zarco, 2001, Kinetic properties and inhibition of the dimeric dUTPase-dUDPase from Leishmania major, Protein Sci., 10, 1426, 10.1110/ps.48801
Wiseman, 1989, Rapid measurement of binding constants and heats of binding using a new titration calorimeter, Anal. Biochem., 179, 131, 10.1016/0003-2697(89)90213-3
Quesada-Soriano, 2007, Plasmodium falciparum dUTPase: studies on protein stability and binding of deoxyuridine derivatives, Biochim. Biophys. Acta, 1774, 936, 10.1016/j.bbapap.2007.04.013
Bianconi, 2007, Calorimetry of enzyme-catalyzed reactions, Biophys. Chem., 126, 59, 10.1016/j.bpc.2006.05.017
Téllez-Sanz, 2007, Effect of an Asp80Ala substitution on the binding of dUTP and dUMP to Trypanosoma cruzi dUTPase, Biochimie, 89, 972, 10.1016/j.biochi.2007.03.007
Cai, 2001, An isothermal titration calorimetric method to determine the kinetic parameters of enzyme catalytic reaction by employing the product inhibition as probe, Anal. Biochem., 299, 19, 10.1006/abio.2001.5397
Nord, 1997, dUTPase from the retrovirus equine infectious anemia virus: specificity, turnover and inhibition, FEBS Lett., 414, 271, 10.1016/S0014-5793(97)00935-6
Bernier-Villamor, 2002, Characterization of deoxyuridine 5′-triphosphate nucleotide-hydrolase from Trypanosoma cruzi, FEBS Lett., 526, 147, 10.1016/S0014-5793(02)03158-7
Kovári, 2004, Mechanistic studies of dUTPases. Nucleosides, Nucleotides Nucleic Acids, 23, 1475, 10.1081/NCN-200027694
Ojida, 2002, Efficient fluorescent ATP-sensing based on coordination chemistry under aqueous neutral conditions, Tetrahedron Lett., 43, 6193, 10.1016/S0040-4039(02)01317-5
Fukada, 1998, Enthalpy and heat capacity changes for the proton dissociation of various buffer components in 0.1 M potassium chloride, Proteins, 33, 159, 10.1002/(SICI)1097-0134(19981101)33:2<159::AID-PROT2>3.0.CO;2-E
Lonhienne, 2000, Psychrophilic enzymes: revisiting the thermodynamic parameters of activation may explain local flexibility, Biochim. Biophys. Acta, 1543, 1, 10.1016/S0167-4838(00)00210-7
Morin, 1991, Direct calorimetric analysis of the enzymatic activity of yeast cytochrome c oxidase, Biochemistry, 30, 8494, 10.1021/bi00098a030
Williams, 1993, Calorimetric evaluation of enzyme-kinetic parameters, J. Org. Chem., 58, 3507, 10.1021/jo00065a010
Olsen, 2006, Applications of isothermal titration calorimetry to measure enzyme kinetics and activity in complex solutions, Thermochim. Acta, 448, 12, 10.1016/j.tca.2006.06.019
Karim, 2004, Precise and continuous observation of cellulase-catalyzed hydrolysis of cello-oligosaccharides using isothermal titration calorimetry, Thermochim. Acta, 412, 91, 10.1016/j.tca.2003.09.001
Barabás, 2004, Structural insights into the catalytic mechanism of phosphate ester hydrolysis by dUTPase, J. Biol. Chem., 279, 42907, 10.1074/jbc.M406135200
Alberty, 1969, Standard Gibbs free energy, enthalpy, and entropy changes as a function of pH and pMg for several reactions involving adenosine phosphates, J. Biol. Chem., 244, 3290, 10.1016/S0021-9258(18)93127-3
Purich, 1999, Enzyme kinetics and mechanism
Low, 1973, Temperature adaptation of enzymes: roles of the free energy, the enthalpy, and the entropy of activation, Proc. Natl. Acad. Sci. USA, 70, 430, 10.1073/pnas.70.2.430
Kumar, 2002, Close-range electrostatic interactions in proteins, Chembiochem., 3, 604, 10.1002/1439-7633(20020703)3:7<604::AID-CBIC604>3.0.CO;2-X
Xiao, 1999, Electrostatic contributions to the stability of hyperthermophilic proteins, J. Mol. Biol., 289, 1435, 10.1006/jmbi.1999.2810
Makhatadze, 2003, Contribution of surface salt bridges to protein stability: guidelines for protein engineering, J. Mol. Biol., 327, 1135, 10.1016/S0022-2836(03)00233-X
Molero, 2004, Salt-bridges can stabilize but not accelerate the folding of the homodimeric coiled-coil peptide GCN4-p1, J. Mol. Biol., 336, 989, 10.1016/j.jmb.2003.12.069
Takahashi, 1981, Thermodynamics of the binding of d-glucose to yeast hexokinase, Biochemistry, 20, 4693, 10.1021/bi00519a026
Takács, 2004, A tradeoff between protein stability and conformational mobility in homotrimeric dUTPases, FEBS Lett., 566, 48, 10.1016/j.febslet.2004.04.039
Lumry, 1954, Conformational changes of proteins, J. Phys. Chem., 58, 110, 10.1021/j150512a005
Kurganov, 1997, Analysis of differencial scanning calorimetry data for proteins. Criteria of validity of one-step mechanism of irreversible protein denaturation, Biophys. Chem., 69, 125, 10.1016/S0301-4622(97)80552-2
Quesada-Soriano, 2006, Kinetic study on the irreversible thermal denaturation of Schistosoma japonicum glutathione S-transferase, Biochim. Biophys. Acta, 1764, 979, 10.1016/j.bbapap.2006.03.002