JobCenter: an open source, cross-platform, and distributed job queue management system optimized for scalability and versatility

Altschul SF, Gish W, Miller W, Myers EW, Lipman DJ: Basic local alignment search tool. J Mol Biol. 1990, 215 (3): 403-410.

Perkins DN, Pappin DJ, Creasy DM, Cottrell JS: Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis. 1999, 20 (18): 3551-3567. 10.1002/(SICI)1522-2683(19991201)20:18<3551::AID-ELPS3551>3.0.CO;2-2.

Yates JR, Eng JK, Mc Cormack AL: Mining genomes: correlating tandem mass spectra of modified and unmodified peptides to sequences in nucleotide databases. Anal Chem. 1995, 67 (18): 3202-3210. 10.1021/ac00114a016.

Deutsch EW, Mendoza L, Shteynberg D, Farrah T, Lam H, Tasman N, Sun Z, Nilsson E, Pratt B, Prazen B, et al: A guided tour of the Trans-Proteomic Pipeline. Proteomics. 2010, 10 (6): 1150-1159. 10.1002/pmic.200900375.

Reynolds SM, Kall L, Riffle ME, Bilmes JA, Noble WS: Transmembrane topology and signal peptide prediction using dynamic bayesian networks. PLoS Comput Biol. 2008, 4 (11): e1000213-10.1371/journal.pcbi.1000213.

Lipman DJ, Pearson WR: Rapid and sensitive protein similarity searches. Science. 1985, 227 (4693): 1435-1441. 10.1126/science.2983426.

Riffle M, Davis TN: The Yeast Resource Center Public Image Repository: A large database of fluorescence microscopy images. BMC Bioinformatics. 2010, 11: 263-10.1186/1471-2105-11-263.

Riffle M, Malmstrom L, Davis TN: The Yeast Resource Center Public Data Repository. Nucleic Acids Res. 2005, 33 (Database issue): D378-D382.