Isolation of TDA-producing Phaeobacter strains from sea bass larval rearing units and their probiotic effect against pathogenic Vibrio spp. in Artemia cultures

Arias, 1999, Low incidence of Vibrio vulnificus among Vibrio isolates from sea water and shellfish of the western Mediterranean coast, J. Appl. Microbiol., 86, 125, 10.1046/j.1365-2672.1999.00641.x Auch, 2010, Standard operating procedure for calculating genome-to-genome distances based on high-scoring segment pairs, Stand. Genomic Sci., 2, 142, 10.4056/sigs.541628 Austin, 2010, Vibrios as causal agents of zoonoses, Vet. Microbiol., 140, 310, 10.1016/j.vetmic.2009.03.015 Austin, 2006, Vibrio harveyi: a significant pathogen of marine vertebrates and invertebrates, Lett. Appl. Microbiol., 43, 119, 10.1111/j.1472-765X.2006.01989.x Aziz, 2008, The RAST server: rapid annotations using subsystems technology, BMC Genomics, 9, 75, 10.1186/1471-2164-9-75 Bolinches, 1987, Heterotrophic bacterial communities associated with the rearing of halibut Hippoglossus hippoglossus with special reference to Vibrio spp., J. Appl. Ichthyol., 3, 165, 10.1111/j.1439-0426.1987.tb00537.x Bricknell, 2005, The use of immunostimulants in fish larval aquaculture, Fish Shellfish Immunol., 19, 457, 10.1016/j.fsi.2005.03.008 Bruhn, 2005, Ecology, inhibitory activity, and morphogenesis of a marine antagonistic bacterium belonging to the Roseobacter clade, Appl. Environ. Microbiol., 71, 7263, 10.1128/AEM.71.11.7263-7270.2005 Bruhn, 2006, Culture conditions of Roseobacter strain 27-4 affect its attachment and biofilm formation as quantified by real-time PCR, Appl. Environ. Microbiol., 72, 3011, 10.1128/AEM.72.4.3011-3015.2006 Bruhn, 2007, Production of antibacterial compounds and biofilm formation by Roseobacter species are influenced by culture conditions, Appl. Environ. Microbiol., 73, 442, 10.1128/AEM.02238-06 Buddruhs, 2013, Molecular and phenotypic analyses reveal the non-identity of the Phaeobacter gallaeciensis type strain deposits CIP 105210T and DSM 17395, Int. J. Syst. Evol. Microbiol., 63, 4340, 10.1099/ijs.0.053900-0 Burbank, 2011, Enhanced resistance to coldwater disease following feeding of probiotic bacterial strains to rainbow trout (Oncorhynchus mykiss), Aquaculture, 321, 185, 10.1016/j.aquaculture.2011.09.004 Cabello, 2006, Heavy use of prophylactic antibiotics in aquaculture: a growing problem for human and animal health and for the environment, Environ. Microbiol., 8, 1137, 10.1111/j.1462-2920.2006.01054.x Croxatto, 2007, Vibrio anguillarum colonization of rainbow trout integument requires a DNA locus involved in exopolysaccharide transport and biosynthesis, Environ. Microbiol., 9, 370, 10.1111/j.1462-2920.2006.01147.x Cude, 2012, Production of the antimicrobial secondary metabolite indigoidine contributes to competitive surface colonization by the marine roseobacter Phaeobacter sp. strain Y4I, Appl. Environ. Microbiol., 78, 4771, 10.1128/AEM.00297-12 D’Alvise, 2010, Inactivation of Vibrio anguillarum by attached and planktonic Roseobacter cells, Appl. Environ. Microbiol., 76, 2366, 10.1128/AEM.02717-09 D’Alvise, 2012, Phaeobacter gallaeciensis reduces Vibrio anguillarum in cultures of microalgae and rotifers, and prevents vibriosis in cod larvae, PLoS ONE, 7, e43996, 10.1371/journal.pone.0043996 D’Alvise, 2013, Protection of cod larvae from vibriosis by Phaeobacter spp.: a comparison of strains and introduction times, Aquaculture, 384–387, 82, 10.1016/j.aquaculture.2012.12.013 de la Peña, 2001, Luminescent vibrios associated with mortality in pond-cultured shrimp Penaeus monodon in the Philippines: species composition, Fish Pathol., 36, 133, 10.3147/jsfp.36.133 Defoirdt, 2004, Disruption of bacterial quorum sensing: an unexplored strategy to fight infections in aquaculture, Aquaculture, 240, 69, 10.1016/j.aquaculture.2004.06.031 Defoirdt, 2005, The impact of mutations in the quorum sensing systems of Aeromonas hydrophila, Vibrio anguillarum and Vibrio harveyi on their virulence towards gnotobiotically cultured Artemia franciscana, Environ. Microbiol., 7, 1239, 10.1111/j.1462-2920.2005.00807.x Defoirdt, 2011, Alternatives to antibiotics for the control of bacterial disease in aquaculture, Curr. Opin. Biotechnol., 14, 251 Devulder, 2003, BIBI, a bioinformatics bacterial identification tool, J. Clin. Microbiol., 41, 1785, 10.1128/JCM.41.4.1785-1787.2003 Eddy, 2002, Microbiology of summer flounder Paralichthys dentatus fingerling production at a marine fish hatchery, Aquaculture, 211, 9, 10.1016/S0044-8486(01)00882-1 FAO, 2001 FAO Fisheries and Aquaculture Department, 2014 Frank, 2014, Complete genome sequence of the Phaeobacter gallaeciensis type strain CIP 105210(T) (=DSM 26640(T)=BS107(T)), Stand. Genomic Sci., 9, 914, 10.4056/sigs.5179110 Frans, 2011, Vibrio anguillarum as a fish pathogen: virulence factors, diagnosis and prevention, J. Fish Dis., 34, 643, 10.1111/j.1365-2761.2011.01279.x Gatesoupe, 1999, The use of probiotics in aquaculture, Aquaculture, 180, 147, 10.1016/S0044-8486(99)00187-8 Gatesoupe, 2002, Probiotic and formaldehyde treatments of Artemia nauplii as food for larval pollack, Pollachius pollachius, Aquaculture, 212, 347, 10.1016/S0044-8486(02)00138-2 Geng, 2010, Expression of tropodithietic acid biosynthesis is controlled by a novel autoinducer, J. Bacteriol., 192, 4377, 10.1128/JB.00410-10 Geng, 2008, Genetic dissection of tropodithietic acid biosynthesis by marine roseobacters, Appl. Environ. Microbiol., 74, 1535, 10.1128/AEM.02339-07 Gibson, 1986, Storage and survival of bacteria by ultra-freeze, Lett. Appl. Microbiol., 3, 127, 10.1111/j.1472-765X.1986.tb01565.x González, 1997, Numerical dominance of a group of marine bacteria in the alpha-subclass of the class Proteobacteria in coastal seawater, Appl. Environ. Microbiol., 63, 4237, 10.1128/AEM.63.11.4237-4242.1997 González, 2000, Bacterial community structure associated with a dimethylsulfoniopropionate-producing North Atlantic algal bloom, Appl. Environ. Microbiol., 66, 4237, 10.1128/AEM.66.10.4237-4246.2000 Gram, 2015, Phaeobacter inhibens from the Roseobacter clade has an environmental niche as a surface colonizer in harbors, Syst. Appl. Microbiol., 38, 483, 10.1016/j.syapm.2015.07.006 Hahnke, 2013, Physiological diversity of Roseobacter clade bacteria co-occurring during a phytoplankton bloom in the North Sea, Syst. Appl. Microbiol., 36, 39, 10.1016/j.syapm.2012.09.004 Hjelm, 2004, Selection and identification of autochthonous potential probiotic bacteria from turbot larvae (Scophthalmus maximus) rearing units, Syst. Appl. Microbiol., 27, 360, 10.1078/0723-2020-00256 Hugh, 1953, The taxonomic significance of fermentative versus oxidative metabolism of carbohydrates by various Gram negative bacteria, J. Bacteriol., 66, 24, 10.1128/JB.66.1.24-26.1953 Kildgaard, 2014, Accurate dereplication of bioactive secondary metabolites from marine-derived fungi by UHPLC-DAD-QTOFMS and a MS/HRMS library, Mar. Drugs, 12, 3681, 10.3390/md12063681 Kintaka, 1984, Thiotropocin, a new sulfur-containing 7-membered-ring antibiotic produced by a Pseudomonas sp., J. Antibiot. (Tokyo), 37, 1294, 10.7164/antibiotics.37.1294 Lauzon, 2008, Isolation of putative probionts from cod rearing environment, Vet. Microbiol., 132, 328, 10.1016/j.vetmic.2008.05.014 Marques, 2006, Gnotobiotically grown aquatic animals: opportunities to investigate host-microbe interactions, J. Appl. Microbiol., 100, 903, 10.1111/j.1365-2672.2006.02961.x Marques, 2006, Use of microalgae and bacteria to enhance protection of gnotobiotic Artemia against different pathogens, Aquaculture, 258, 116, 10.1016/j.aquaculture.2006.04.021 Mavrodi, 2010, Diversity and evolution of the phenazine biosynthesis pathway, Appl. Environ. Microbiol., 76, 866, 10.1128/AEM.02009-09 Moran, 2003, Linking a bacterial taxon to sulfur cycling in the sea: studies of the marine Roseobacter group, Geomicrobiol. J., 20, 375, 10.1080/01490450303901 Munro, 1995, Comparison of the growth and survival of larval turbot in the absence of culturable bacteria with those in the presence of Vibrio anguillarum, Vibrio alginolyticus or a marine Aeromonas sp., Appl. Environ. Microbiol., 61, 4425, 10.1128/AEM.61.12.4425-4428.1995 Naka, 2011, Complete genome sequence of the marine fish pathogen Vibrio anguillarum harboring the pJM1 virulence plasmid and genomic comparison with other virulent strains of V. anguillarum and V. ordalii, Infect. Immun., 79, 2889, 10.1128/IAI.05138-11 Nogami, 1992, Bacteria as biocontrol agents for rearing larvae of the crab Portunus trituberculatus, Can. J. Fish. Aquat. Sci., 49, 2373, 10.1139/f92-261 Norqvist, 1989, Protection of rainbow trout against vibriosis and furunculosis by the use of attenuated strains of Vibrio anguillarum, Appl. Environ. Microbiol., 55, 1400, 10.1128/AEM.55.6.1400-1405.1989 Norqvist, 1990, Identification and characterization of a zinc metalloprotease associated with invasion by the fish pathogen Vibrio anguillarum, Infect. Immun., 58, 3731, 10.1128/IAI.58.11.3731-3736.1990 Olafsen, 2001, Interactions between fish larvae and bacteria in marine aquaculture, Aquaculture, 200, 223, 10.1016/S0044-8486(01)00702-5 Planas, 2004, Enhancement of rotifer (Brachionus plicatilis) growth by using terrestrial lactic acid bacteria, Aquaculture, 240, 313, 10.1016/j.aquaculture.2004.07.016 Planas, 2006, Probiotic effect in vivo of Roseobacter strain 27-4 against Vibrio (Listonella) anguillarum infections in turbot (Scophthalmus maximus L.) larvae, Aquaculture, 255, 323, 10.1016/j.aquaculture.2005.11.039 Porsby, 2008, Phaeobacter and Ruegeria species of the Roseobacter clade colonize separate niches in a Danish turbot (Scophthalmus maximus)-rearing farm and antagonize Vibrio anguillarum under different growth conditions, Appl. Environ. Microbiol., 74, 7356, 10.1128/AEM.01738-08 Porsby, 2011, Resistance and tolerance to tropodithietic acid, an antimicrobial in aquaculture, is hard to select, Antimicrob. Agents Chemother., 55, 1332, 10.1128/AAC.01222-10 Prol, 2009, Real-time PCR detection and quantification of fish probiotic Phaeobacter strain 27-4 and fish pathogenic Vibrio in microalgae, rotifer, Artemia and first feeding turbot (Psetta maxima) larvae, J. Appl. Microbiol., 106, 1292, 10.1111/j.1365-2672.2008.04096.x Prol García, 2014, Biofilm formation is not a prerequisite for production of the antibacterial compound tropodithietic acid in Phaeobacter inhibens DSM17395, J. Appl. Microbiol., 117, 1592, 10.1111/jam.12659 Pujalte, 2003, Virulence and molecular typing of Vibrio harveyi strains isolated from cultured dentex, gilthead sea bream and European sea bass, Syst. Appl. Microbiol., 26, 284, 10.1078/072320203322346146 Rao, 2005, Competitive interactions in mixed-species biofilms containing the marine bacterium Pseudoalteromonas tunicata, Appl. Environ. Microbiol., 71, 1729, 10.1128/AEM.71.4.1729-1736.2005 Rao, 2007, Low densities of epiphytic bacteria from the marine alga Ulva australis inhibit settlement of fouling organisms, Appl. Environ. Microbiol., 73, 7844, 10.1128/AEM.01543-07 Rattanama, 2009, Shrimp pathogenicity, hemolysis, and the presence of hemolysin and TTSS genes in Vibrio harveyi isolated from Thailand, Dis. Aquat. Organ., 86, 113, 10.3354/dao02119 Reid, 2009, Analysis of bacterial populations in the gut of developing cod larvae and identification of Vibrio logei, Vibrio anguillarum and Vibrio splendidus as pathogens of cod larvae, Aquaculture, 288, 36, 10.1016/j.aquaculture.2008.11.022 Richter, 2015, JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison, Bioinformatics Ruiz-Ponte, 1998, Roseobacter gallaeciensis sp. nov., a new marine bacterium isolated from rearings and collectors of the scallop Pecten maximus, Int. J. Syst. Bacteriol., 48, 537, 10.1099/00207713-48-2-537 Seyedsayamdost, 2011, The Jekyll-and-Hyde chemistry of Phaeobacter gallaeciensis, Nat. Chem., 3, 331, 10.1038/nchem.1002 Skov, 1995, Comparison of pulsed-field gel electrophoresis, ribotyping, and plasmid profiling for typing of Vibrio anguillarum serovar O1, Appl. Environ. Microbiol., 61, 1540, 10.1128/AEM.61.4.1540-1545.1995 Sorgeloos, 1977, Decapsulation of Artemia cysts: a simple technique for the improvement of the use of brine shrimp in aquaculture, Aquaculture, 12, 311, 10.1016/0044-8486(77)90209-5 Thompson, 2004, Biodiversity of vibrios, Microbiol. Mol. Biol. Rev., 68, 10.1128/MMBR.68.3.403-431.2004 Toranzo, 2005, A review of the main bacterial fish diseases in mariculture systems, Aquaculture, 246, 37, 10.1016/j.aquaculture.2005.01.002 Vandenberghe, 1998, Vibrios associated with Penaeus chinensis (Crustacea: Decapoda) larvae in Chinese shrimp hatcheries, Aquaculture, 169, 121, 10.1016/S0044-8486(98)00319-6 Verschuere, 2000, Probiotic bacteria as biological control agents in aquaculture, Microbiol. Mol. Biol. Rev., 64, 655, 10.1128/MMBR.64.4.655-671.2000 Vesth, 2013, CMG-biotools, a free workbench for basic comparative microbial genomics, PLOS ONE, 8, e60120, 10.1371/journal.pone.0060120 Weinstein, 1994, Predictive statistics and artificial intelligence in the U.S. National Cancer Institute's drug discovery program for cancer and AIDS, Stem Cells, 12, 13, 10.1002/stem.5530120106 Zhang, 2000, Pathogenicity of Vibrio harveyi to salmonids, J. Fish Dis., 23, 93, 10.1046/j.1365-2761.2000.00214.x