Isolation, identification, optimization, and metabolite profiling of Streptomyces sparsus VSM-30

Adya D, Susmita M (2017) Removal of textile dye reactive green-19 using bacterial consortium: process optimization using response surface methodology and kinetics study. J Environ Chem Eng 5:612–627 Amita J, Swati P, Manish N, Kamala V, Chamanlal S (2008) Dissolution test for site-specific release of isoniazid pellets in USP apparatus 3 (reciprocating cylinder): optimization using response surface methodology. Eur J Pharm Biopharm 69:769–775 Baumann R, Ettlinger L, Hutter R, Kocher HP (1976) Control of melanin formation in Strepromyces glaucescens. In: Arai T (ed) Actinomycetes: the boundary microorganisms. Tokyo, Toppan Co, pp 55–63 Bipasha D, Ananda Prasad R, Sangita B, Sudip Ch, Chiranjib B (2015) Lactose hydrolysis by β-galactosidase enzyme: optimization using response surface methodology. Ecotoxicol Environ Saf 121:244–252 Boussada O, Ammar A, Saidana D, Chriaa J, Chraif I, Daami M, Helal AN, Mighri Z (2008) Chemical composition and antimicrobial activity of volatile components from capitula and aerial parts of Rhaponticum acaule DC growing wild in Tunisia. Microbiol Res 163:87–95 Bozzola JJ, Russell LD (1999) Electron microscopy principles and techniques for biologists, 2nd edn. Jones and Bartlett Publishers, Sudbury Burkhardt K, Fiedler HP, Grabley S, Thiericke R, Zeeck A (1996) New cineromycins and musacins obtained by metabolite pattern analysis of Streptomyces griseoviridis. Taxonomy, fermentation, isolation and biological activity. J Antibiot 49:432–437 Cain CC, Lee D, Waldo RH, Henry AT, Casida EJ, Wani MC, Wall ME, Oberlies NH, Falkinham JO (2003) Synergistic antimicrobial activity of metabolites produced by a non obligate bacterial predator. Antimicrob Agents Chemother 47:2113–2117 Cho JY, Williams PG, Kwon HC, Jensen PR, Fenical W (2006) Lucentamycins A-D, cytotoxic peptides from the marine-derived actinomycete Nocardiopsis lucentensis. J Nat Prod 70:1321–1328 Chongqing W, Hui W, Younian L, Luoluo H (2016) Optimization of surface treatment for flotation separation of polyvinyl chloride and polyethylene terephthalate waste plastics using response surface methodology. J Clean Prod 139:866–872 Cimmino A, Puopolo G, Perazzolli M, Andolfi A, Melck D, Pertot I, Evidente A (2014) Cyclo (L-Pro-L-Tyr), the fungicide isolated from Lysobacter Capcici AZ78. A structure-activity relationship study. Chem Heterocycl Compd 50:317–323 Cowan ST (1974) Cowan and Steel’s manual for the identification of medical bacteria, 2nd edn. Univ. Press, Cambridge Das S, Lyla PS, Khan SA (2006) Marine microbial diversity and ecology: importance and future perspectives. Curr Sci 90:1325–1335 Deepak V, Kalishwaralal K, Ramkumarpandian S, Babu SV, Senthilkumar SR, Sangiliyandi G (2008) Optimization of media composition for Nattokinase production by Bacillus subtilis using response surface methodology. Bioresour Technol 99:8170–8174 Ellaiah P, Adinarayana G, Saisha V, Vasu P (2005) An oligoglycosidic antibiotic from a newly isolated Streptomyces albovinaceus. Ind J Microbiol 45:33–36 Elleuch L, Shaaban M, Smaoui S, Mellouli L, Rebai IK, Ben Fguira LF, Shaaban KA, Laatsch H (2010) Bioactive secondary metabolites from a new terrestrial Streptomyces sp. TN262. Appl Biochem Biotechnol 162:579–593 Ferreira SLC, Bruns RE, Ferreira HS, Matos GD, David JM, Brandão GC, da Silva EG, Portugal LA, dos Reis PS, Souza AS, dos Santos WN (2007) Box-behnken design: an alternative for the optimization of analytical methods. Anal Chim Acta 597:179–186 Gaddafi ID, Tawfik AS, Shamsuddeen AA (2017) Response surface methodology optimization of adsorptive desulfurization on nickel/activated carbon. Chem Eng J 313:993–1003 Gámiz-Gracia L, Cuadros-Rodríguez L, Almansa-López E, Soto-Chinchilla JJ, García-Campaña AM (2003) Use of highly efficient draper-lin small composite designs in the formal optimisation of both operational and chemical crucial variables affecting a FIA-chemiluminescence detection system. Talanta 60:523–534 Gordon RE (1966) Some criteria for the recognition of Nocardia madura (Vincent) Blanchord. J Gen Microbiol 45:355–364 Halil İbrahim O, Ilkay K (2016) Application of response surface methodology for optimizing the recovery of phenolic compounds from hazelnut skin using different extraction methods. Ind Crops Pod 91:114–124 Hamid Shahbaz M, Seyede Samaneh M, Saeideh S, Maryam P, Anvarsadat K, Sajad B (2015) Response surface methodology to optimize partition and purification of two recombinant oxidoreductase enzymes, glucose dehydrogenase and d-galactose dehydrogenase in aqueous two-phase systems. Protein Expr Purif 108:41–47 Harada K, Nishida F, Takagi H, Suzuki M, Iwashita T (1984) Studies on an antibiotic, albocycline VII. Minor components of albocycline. J Antibiot 37:1187–1197 Hawas UW, Shaaban M, Shaaban KA, Speitling M, Maier A, Kelter G, Fiebig HH, Meiners M, Helmke E, Laatsch H (2009) Mansouramycins A-D, cytotoxic isoquinolinequinones from a marine Streptomycete. J Nat Prod 72:2120–2124 Hayakawa Y, Shirasaki S, Kawasaki T, Matsuo Y, Adachi K, Shizuri Y (2007) Structures of new cytotoxic antibiotics, piericidins C7 and C8. J Antibiot 60:201–203 Hensyl WR (1994) In: John GH, Stanley TW (eds) Bergey’s manual of systematic bacteriology, 9th edn. Williams and Wilkins, Baltimore Isik K, Chun J, Hah YC, Goodfellow M (1999) Nocardia salmonicida nom. rev., a fish pathogen. Int J Syst Bacteriol 49:833–837 Jensen PR, Williams PG, Oh DC, Ziegler L, Fenical W (2007) Species specific secondary metabolite production in marine actinomycetes of the genus Salinispora. Appl Environ Microbiol 73:1146–1152 Jones K (1949) Fresh isolates of actinomycetes in which the presence of sporogenous aerial mycelia is a fluctuating characteristics. J Bacteriol 57:141–145 Kampfer P, Kroppenstedt RM, Dott W (1991) A numerical classification of the genera Streptomyces and Streptoverticillium using miniaturized physiological tests. J Gen Microbiol 137:1831–1891 Katrin T, Philip L, Jürgen H (2012) Application of genetic algorithms and response surface analysis for the optimization of batch chromatographic systems. Biochem Eng J 63:66–75 Khaoula MH, Majdi H, Christophe R, Didier LC, Riadh K, Hatem M (2016) Optimization extraction of polysaccharide from Tunisian Zizyphus lotus fruit by response surface methodology: composition and antioxidant activity. Food Chem 212:476–484 Kock I, Maskey RP, Biabani MAF, Helmke E, Laatsch H (2005) 1-Hydroxy-1-norresistomycin and resistoflavine methyl ether: new antibiotics from marine derived Streptomycetes. J Antibiot 58:530–534 Kumar N, Mohandas C, Nambisan B, Soban Kumar DR, Ravi SL (2013) Isolation of proline based cyclic dipeptides from Bacillus sp. N strain associated with rhabitid entomopathogenic nematode and its antimicrobial properties. World J Microbiol Biotechnol 29:355–364 Li Ping, Li Ma, Jia-qin XI, Dun-huang F, Fa-xiang Y, Ming-he MO (2012) Studies on the biocontrol efficiencies of strain BJLSH9 towards nematode and Phytophthora nicotianae and the identification of the nematicidal metabolite. J Yunnan Univ 34:590–595 Li XG, Tang XM, Xiao J, Ma GH, Xu L, Xie SJ, Xu MJ, Xiao X, Xu J (2013) Harnessing the potential of halogenated natural product biosynthesis by mangrove-derived actinomycetes. Mar Drugs 11:3875–3890 Maelle D, Ashraf B, Andre G, Yves D, Paul A (2017) Optimization of a green process for the extraction of lutein and chlorophyll from spinach by-products using response surface methodology (RSM). LWT Food Sci Technol 79:170–177 Majd MH, Ahmad R, Davoud S, Bashi S, Ali M, Shadi B (2014) Optimization of ultrasonic-assisted extraction of phenolic compounds from bovine pennyroyal (Phlomidoschema parviflorum) leaves using response surface methodology. Ind Crop Prod 57:195–202 Matsuo H, Kondo Y, Kawasaki T, Imamura N (2015) Cineromycin B isolated from S. cinerochromogenes inhibits adipocyte differentiation of 3T3-L1 cells via kruppel-like factors 2 and 3. Life Sci 135:35–42 Miller ED, Kauffman CA, Jensen PR, Fenical W (2007) Piperazimycins cytotoxic hexadepsipeptides from a marine derived bacterium of the genus Streptomyces. J Org Chem 72:323–330 Myers RH, Montgomery DC, Anderson-Cook CM (2009) Response surface methodology: process and product optimization using designed experiments. Wiley, Hoboken Nilsson WB, Strom MS (2002) Detection and identification of bacterial pathogens of fish in kidney tissue using terminal restriction fragment length polymorphism (T-RFLP) analysis of 16S rRNA genes. Dis Aquat Org 48:175–185 Nonomura H, Ohara Y (1969) Distribution of actinomycetes in soil. VI. A culture method effective for both preferential isolation and enumeration of Microbispora and Streptosporangium strains in soil (Part 1). J Ferment Technol 47:463–469 Pridham TG, Gottlieb D (1948) The utilization of carbon compounds by some actinomycetales as an aid for species determination. J Bacteriol 56:107–114 Pridham TG, Hesseltine CW, Benedict RG (1958) A guide for the classification of Streptomyces according to selected groups. Appl Microbiol 6:52–79 Qixuan L, Huiling L, Junli R, Aojie D, Weiying L, Chuanfu L, Runcang S (2017) Production of xylooligosaccharides by microwave-induced, organic acid-catalyzed hydrolysis of different xylan-type hemicelluloses: optimization by response surface methodology. Carbohydr Polym 157:214–225 Renner MK, Shen YC, Cheng XC, Jensenm PR, Frankmoelle W, Kauffman CA, Fenical W, Lobkovsky E, Cladry J (1999) Cyclomarins A-C, new anti-inflammatory cyclic peptides produced by a marine bacterium (Streptomyces sp.). J Am Chem Soc 121:11273–11276 Saranya P, Sekaran G (2016) Statistical optimization of the enzymatic breakdown of 2-nitrophloroglucinol using thermo tolerant mixed intracellular enzymes from Serratia marcescens. J Taiwan Inst Chem Eng 59:152–164 Shiono Y, Shiono N, Seo S, Oka S, Yamazaki Y (2002) Effects of polyphenolic anthrone derivatives resistomycin and hypericin on apoptois in human megakaryoblastic leukemia CMK-7cell2. Z Natuforsch 57:923–929 Shirling EB, Gottlieb D (1966) Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16:313–340 Shuvankar B, Savita K, Sabu T, Nimmy A (2015) Halophilic and halotolerant actinomycetes from a marine saltern of Goa, India producing anti-bacterial metabolites. J Biosci Bioeng 119:323–330 Skropeta D (2008) Deep sea natural products. Nat Prod Rep 25:1131–1166 Souagui Y, Tritsch D, Grosdemange-Billiard C, Kecha M (2015) Optimization of antifungal production by an alkaliphilic and halotolerant actinomycete, Streptomyces sp. SY-BS5, using response surface methodology. J Med Mycol 25:108–115 Subramani R, Aalbersberg W (2012) Marine actinomycetes: an ongoing source of novel bioactive metabolites. Microbiol Res 167:571–580 Tresner HD, Hayes JA, Backus EJ (1968) Differential tolerance of Streptomyces to sodium chloride as a taxonomic aid. Appl Microbiol 16:1134–1136 Vohra A, Satyanarayana T (2002) Statistical optimization of medium components by response surface methodology to enhance phytase production by Pichia anomala. Proc Biochem 37:999–1004 Waksman SA (1961) The actinomycetes. Vol. II. Classification, identification and descriptions of genera and species. The Williams and Wilkins Co, Baltimore Wang L, Yun BS, George NP, Wendt-Pienkowski E, Galm U, Oh TJ, Coughlin JM, Zhang G, Tao M, Shen B (2007) Glycopeptide antitumor antibiotic zorbamycin from Streptomyces flavoviridis ATCC 21892: strain improvement and structure elucidation. J Nat Prod 7:402–406 Yatisha KV, Lalithambaa HS, Sureshb R, Arunb SB, Vinay Kumar P (2016) Optimization of scum oil biodiesel production by using response surface methodology. Process Saf Environ Prot 102:667–672 Zucchi TD, Almeida LG, Moraes LAB, Consoli FL (2014) Albocycline, the main bioactive compound from Propionicimonas sp. ENT-18 against Sclerotinia sclerotiorum. Ind Crops Prod 52:264–268