Isolation, growth, enzyme assay and identification via 16S rRNA full sequencing of cellulolytic microbes from Nepal for biofuel production

Freydière, 1997, Comparison of three commercial media for direct identification and discrimination of Candida species in clinical specimens, Eur. J. Clin. Microbiol. Infect. Dis., 16, 464, 10.1007/BF02471913 Grabow, 1979, Comparison of m-Endo LES, MacConkey, and Teepol media for membrane filtration counting of total coliform bacteria in water, Appl. Environ. Microbiol., 38, 351, 10.1128/AEM.38.3.351-358.1979 Coudron, 1989, Comparison of rapid urease tests, staining techniques, and growth on different solid media for detection of Campylobacter pylori, J. Clin. Microbiol., 27, 1527, 10.1128/JCM.27.7.1527-1530.1989 Bridson, 1970, Chapter III design and formulation of microbial culture media, Meth. Microbiol., 3, 229, 10.1016/S0580-9517(08)70541-5 Zhao, 2016, Towards efficient bioethanol production from agricultural and forestry residues: exploration of unique natural microorganisms in combination with advanced strain engineering, Bioresour. Technol., l, 84, 10.1016/j.biortech.2016.03.158 Sun, 2002, Hydrolysis of lignocellulosic materials for ethanol production: a review, Bioresour. Technol., 83, 1, 10.1016/S0960-8524(01)00212-7 Shen, 1955, Cellobiohydrolase B, a second exo-cellobiohydrolase from the cellulolytic bacterium Cellulomonas fimi, Biochem. J., 1, 67 KING, 1955, Comparisons of two media proposed for the isolation of bacteria from the rumen, J. Bacteriol., 70, 726, 10.1128/JB.70.6.726-729.1955 Saha, 2006, Characterization of cellulase-producing bacteria from the digestive tract of tilapia, Oreochromis mossambica (Peters) and grass carp, Ctenopharyngodon idella (Valenciennes), Aquacult. Res., 37, 380, 10.1111/j.1365-2109.2006.01442.x Singh, 2013, Isolation, identification, and characterization of a cellulolytic Bacillus amyloliquefaciens strain SS35 from rhinoceros dung, ISRN Microbiol, 2013, 10.1155/2013/728134 Han, 1968, Isolation and characterization of a cellulose-utilizing bacterium, Appl. Microbiol., 16, 1140, 10.1128/AEM.16.8.1140-1145.1968 Gupta, 2012, Isolation of cellulose-degrading bacteria and determination of their cellulolytic potential, Internet J. Microbiol., 5 Bairagi, 2002, Enzyme producing bacterial flora isolated from fish digestive tracts, Aquacult. Int., 10, 109, 10.1023/A:1021355406412 Moon, 2011, Paenibacillus sacheonensis sp. nov., a xylanolytic and cellulolytic bacterium isolated from tidal flat sediment, Int. J. Syst. Evol. Microbiol., 61, 2753, 10.1099/ijs.0.029066-0 Corry, 1994, Handbook of microbiological media, Int. J. Food Microbiol., 22, 85, 10.1016/0168-1605(94)90011-6 Neidhardt, 1974, Culture medium for enterobacteria, J. Bacteriol., 119, 736, 10.1128/JB.119.3.736-747.1974 Sethi, 2013, Optimization of cellulase production from bacteria isolated from soil, ISRN Biotechnol, 1, 10.5402/2013/985685 Woo, 2014, Enzyme activities of aerobic lignocellulolytic bacteria isolated from wet tropical forest soils, Syst. Appl. Microbiol., 37, 60, 10.1016/j.syapm.2013.10.001 Liang, 2014, Isolation, screening, and identification of cellulolytic bacteria from natural reserves in the subtropical region of China and optimization of cellulase production by Paenibacillus terrae ME27-1, BioMed Res. Int., 1 Jami, 2013, Exploring the bovine rumen bacterial community from birth to adulthood, ISME J., 7, 1069, 10.1038/ismej.2013.2 Dan, 2014, Characterization and identification of phytase-producing bacteria isolated from the gastrointestinal tract of four freshwater teleosts, Ann. Microbiol., 64, 297, 10.1007/s13213-013-0664-3 Peacock, 2013, Pyrosequencing reveals high-temperature cellulolytic microbial consortia in great boiling spring after in situ lignocellulose enrichment, PLoS One, 8, 3, 10.1371/journal.pone.0059927 Priya, 2016, Cellulolytic activity of thermophilic bacilli isolated from tattapani hot spring sediment in north west himalayas, Indian J. Microbiol., 56, 228, 10.1007/s12088-016-0578-4 Bayer, 1998, Cellulose, cellulases and cellulosomes, Curr. Opin. Struct. Biol., 8, 548, 10.1016/S0959-440X(98)80143-7 Bhat, 1997, Cellulose degrading enzymes and their potential industrial applications, Biotechnol. Adv., 15, 583, 10.1016/S0734-9750(97)00006-2 Hasunuma, 2013, A review of enzymes and microbes for lignocellulosic biorefinery and the possibility of their application to consolidated bioprocessing technology, Bioresour. Technol., 135, 513, 10.1016/j.biortech.2012.10.047 Wood, 1988, Methods for measuring cellulase activities, Meth. Enzymol., 160, 87, 10.1016/0076-6879(88)60109-1 Lu, 2004, Effect of inoculating flower stalks and vegetable waste with ligno-cellulolytic microorganisms on the composting process, J Environ Sci Heal Part B-Pesticides Food Contam Agric Wastes, 39, 871, 10.1081/LESB-200030896 Hendricks, 1995, A new solid medium for enumerating cellulose-utilizing bacteria in soil, Appl. Environ. Microbiol., 61, 2016, 10.1128/AEM.61.5.2016-2019.1995 Lorenc-Grabowska, 2006, Adsorption characteristics of Congo-red on coal-based mesoporous activated carbon, Dyes Pigments, 74, 34, 10.1016/j.dyepig.2006.01.027 Acemioǧlu, 2004, Adsorption of Congo-red from aqueous solution onto calcium-rich fly ash, J. Colloid Interface Sci., 274, 371, 10.1016/j.jcis.2004.03.019 Percival Zhang, 2006, Outlook for cellulase improvement: screening and selection strategies, Biotechnol. Adv., 24, 452, 10.1016/j.biotechadv.2006.03.003 Ghose, 1987, Measurement of cellulase activities, Pure Appl. Chem., 59, 257, 10.1351/pac198759020257 Rawat, 2012, Purification and characterization of an acidothermophilic cellulase enzyme produced by Bacillus subtilis strainLFS3, Extremophiles, 4, 637, 10.1007/s00792-012-0463-y Pourcher, 2000, Enumeration and characterization of cellulolytic bacteria from refuse of a landfill, FEMS Microbiol. Ecol., 34, 229, 10.1111/j.1574-6941.2001.tb00774.x Sleat, 1984, Isolation and characterization of an anaerobic, cellulolytic bacterium, Clostridium cellulovorans sp. nov, Appl. Environ. Microbiol., 48, 88, 10.1128/AEM.48.1.88-93.1984 Kaul, 2002, Long-circulating poly (ethylene glycol)-modified gelatin nanoparticles for intracellular delivery, Pharm. Res. (N. Y.), 19, 1061, 10.1023/A:1016486910719 Taylor, 2009, Thermophilic ethanologenesis: future prospects for second-generation bioethanol production, Trends Biotechnol., 27, 398, 10.1016/j.tibtech.2009.03.006 Gusakov, 2011, Alternatives to Trichoderma reesei in biofuel production, Trends Biotechnol., 29, 419, 10.1016/j.tibtech.2011.04.004 Coughlan, 1985, The properties of fungal and bacterial cellulases with comment on their production and application, Biotechnol. Genet. Eng. Rev., 3, 39, 10.1080/02648725.1985.10647809 Clarridge, 2004, Impact of 16S rRNA gene sequence analysis for identification of bacteria on clinical microbiology and infectious diseases, Clin. Microbiol. Rev., 17, 840, 10.1128/CMR.17.4.840-862.2004 Yang, 2014, Species identification through mitochondrial rRNA genetic analysis, Sci. Rep., 4, 4089, 10.1038/srep04089 Wei, 2007, Computer-simulated RFLP analysis of 16S rRNA genes: identification of ten new phytoplasma groups, Int. J. Syst. Evol. Microbiol., 57, 1855, 10.1099/ijs.0.65000-0 Idriss, 2002, Extracellular phytase activity of Bacillus amyloliquefaciens FZB45 contributes to its plant-growth-promoting effect, Microbiology, 148, 2097, 10.1099/00221287-148-7-2097 Lee, 2008, Purification and characterization of cellulase produced by Bacillus amyoliquefaciens DL-3 utilizing rice hull, Bioresour. Technol., 99, 378, 10.1016/j.biortech.2006.12.013 Chen, 2007, Comparative analysis of the complete genome sequence of the plant growth-promoting bacterium Bacillus amyloliquefaciens FZB42, Nat. Biotechnol., 25, 1007, 10.1038/nbt1325 Kunst, 1997, The complete genome sequence of the gram-positive bacterium Bacillus subtilis, Nature, 390, 249, 10.1038/36786 Zhang, 2011, One-step production of lactate from cellulose as the sole carbon source without any other organic nutrient by recombinant cellulolytic Bacillus subtilis, Metab. Eng., 13, 364, 10.1016/j.ymben.2011.04.003 Huang, 2005, Bacillus nematocida sp. nov., a novel bacterial strain with nematotoxic activity isolated from soil in Yunnan, China, Syst. Appl. Microbiol., 28, 323, 10.1016/j.syapm.2005.01.008 Horn, 2005, Dechloromonas denitrificans sp. nov., Flavobacterium denitrificans sp. nov., Paenibacillus anaericanus sp. nov. and Paenibacillus terrae strain MH72, N2O-producing bacteria isolated from the gut of the earthworm Aporrectodea caliginosa, Int. J. Syst. Evol. Microbiol., 55, 1255, 10.1099/ijs.0.63484-0 Bittar, 2014, Gorilla gorillagorilla gut: a potential reservoir of pathogenic bacteria as revealed using culturomics and molecular tools, Sci. Rep., 4, 7174, 10.1038/srep07174 De Castro, 2011, Cellulolytic potential of a novel strain of Paenibacillus sp. isolated from the armored catfish Parotocinclus maculicauda gut, Braz. J. Microbiol., 42, 1608, 10.1590/S1517-83822011000400048 Yang, 2014, Community composition and cellulase activity of cellulolytic bacteria from forest soils planted with broad-leaved deciduous and evergreen trees, Appl. Microbiol. Biotechnol., 98, 1449, 10.1007/s00253-013-5130-4 Mormeneo, 2012, Efficient expression of a Paenibacillus barcinonensis endoglucanase in Saccharomyces cerevisiae, J. Ind. Microbiol. Biotechnol., 39, 115, 10.1007/s10295-011-1006-8 Gugliandolo, 2014, Antiviral and immunomodulatory effects of a novel bacterial exopolysaccharide of shallow marine vent origin, J. Appl. Microbiol., l, 1028, 10.1111/jam.12422 Maugeri, 2002, A halophilicthermostolerant Bacillus isolated from a marine hot spring able to produce a new exopolysaccharide, Biotechnol. Lett., 24, 515, 10.1023/A:1014891431233 Derekova, 2008, Phylogenetic diversity of thermophilic carbohydrate degrading bacilli from Bulgarian hot springs, World J. Microbiol. Biotechnol., 24, 1697, 10.1007/s11274-008-9663-0 Bischoff, 2006, Purification and characterization of a family 5 endoglucanase from a moderately thermophilic strain of Bacillus licheniformis, Biotechnol. Lett., 28, 1761, 10.1007/s10529-006-9153-0 Annamalai, 2011, A novel thermostable and halostable carboxymethylcellulase from marine bacterium Bacillus licheniformisAU01, World J. Microbiol. Biotechnol., 27, 2111, 10.1007/s11274-011-0674-x