Isolation and sequence analysis of canine respiratory coronavirus

Abraham, 1990, Deduced sequence of the bovine coronavirus spike protein and identification of the internal proteolytic cleavage site, Virology, 176, 296, 10.1016/0042-6822(90)90257-R Abraham, 1990, Sequence and expression analysis of potential nonstructural proteins of 4.9, 4.8, 12.7, and 9.5kDa encoded between the spike and membrane protein genes of the bovine coronavirus, Virology, 177, 488, 10.1016/0042-6822(90)90513-Q Bairoch, 1997, The PROSITE database, its status in 1997, Nucl. Acids Res., 25, 217, 10.1093/nar/25.1.217 Budzilowicz, 1987, In vitro synthesis of two polypeptides from a nonstructural gene of coronavirus mouse hepatitis virus strain A59, Virology, 157, 509, 10.1016/0042-6822(87)90293-5 Cox, 1991, Bovine coronavirus nonstructural protein ns2 is a phosphoprotein, Virology, 185, 509, 10.1016/0042-6822(91)90810-X de Haan, 2002, The group-specific murine coronavirus genes are not essential, but their deletion, by reverse genetics, is attenuating in the natural host, Virology, 296, 177, 10.1006/viro.2002.1412 Deregt, 1987, Structural proteins of bovine coronavirus and their intracellular processing, J. Gen. Virol., 68, 2863, 10.1099/0022-1317-68-11-2863 Dyrlov Bendtsen, 2004, Improved prediction of signal peptides: SignalP 3.0, J. Mol. Biol., 340, 783, 10.1016/j.jmb.2004.05.028 Erles, 2005, Investigation into the causes of canine infectious respiratory disease: antibody responses to canine respiratory coronavirus and canine herpesvirus in two kennelled dog populations, Arch. Virol., 150, 1493, 10.1007/s00705-005-0533-x Erles, 2003, Detection of a group 2 coronavirus in dogs with canine infectious respiratory disease, Virology, 310, 216, 10.1016/S0042-6822(03)00160-0 Felsenstein, J. PHYLIP (Phylogeny Inference Package) version 3.6. Department of Genome Sciences, University of Washington, Seattle. Fischer, 1997, The internal open reading frame within the nucleocapsid gene of mouse hepatitis virus encodes a structural protein that is not essential for viral replication, J. Virol., 71, 996, 10.1128/JVI.71.2.996-1003.1997 Guy, 2000, Characterization of a coronavirus isolated from a diarrheic foal, J. Clin. Microbiol., 38, 4523, 10.1128/JCM.38.12.4523-4526.2000 Hofmann, 1993, TMbase—A database of membrane spanning protein segments, Biol. Chem. Hoppe-Seyler, 374 Hofmann, 1993, Leader–mRNA junction sequences are unique for each subgenomic mRNA species in the bovine coronavirus and remain so throughout persistent infection, Virology, 196, 163, 10.1006/viro.1993.1464 Jendrach, 1999, Characterization of an internal ribosome entry site within mRNA 5 of murine hepatitis virus, Arch. Virol., 144, 921, 10.1007/s007050050556 Julenius, 2005, Prediction, conservation analysis, and structural characterization of mammalian mucin-type O-glycosylation sites, Glycobiology, 15, 153, 10.1093/glycob/cwh151 Kaneshima, 2006, The prevalence of a group 2 coronavirus in dogs in Japan, J. Vet. Med. Sci., 68, 21, 10.1292/jvms.68.21 Kienzle, 1990, Structure and orientation of expressed bovine coronavirus hemagglutinin-esterase protein, J. Virol., 64, 1834, 10.1128/JVI.64.4.1834-1838.1990 Mazumder, 2002, Detection of novel members, structure-function analysis and evolutionary classification of the 2H phosphoesterase superfamily, Nucl. Acids Res., 30, 5229, 10.1093/nar/gkf645 Mounir, 1992, Sequence analysis of the membrane protein gene of human coronavirus OC43 and evidence for O-glycosylation, J. Gen. Virol., 73, 2731, 10.1099/0022-1317-73-10-2731 Mounir, 1993, Human coronavirus OC43 RNA 4 lacks two open reading frames located downstream of the s gene of bovine coronavirus, Virology, 192, 355, 10.1006/viro.1993.1043 Mounir, 1993, Molecular characterization of the S protein gene of human coronavirus OC43, J. Gen. Virol., 74, 1981, 10.1099/0022-1317-74-9-1981 Ontiveros, 2001, Inactivation of expression of gene 4 of mouse hepatitis virus strain JHM does not affect virulence in the murine CNS, Virology, 289, 230, 10.1006/viro.2001.1167 Page, 1996, TreeView: an application to display phylogenetic trees on personal computers, Comput. Appl. Biosci., 12, 357 Pearson, 1990, Rapid and sensitive sequence comparison with FASTP and FASTA, Methods Enzymol., 183, 63, 10.1016/0076-6879(90)83007-V Priestnall, 2006, Serological prevalence of canine respiratory coronavirus, Vet. Microbiol., 115, 43, 10.1016/j.vetmic.2006.02.008 Rost, 1996, Topology prediction for helical transmembrane proteins at 86% accuracy, Protein Sci., 5, 1704, 10.1002/pro.5560050824 Sasseville, 2002, Sequence of the 3′-terminal end (8.1kb) of the genome of porcine haemagglutinating encephalomyelitis virus: comparison with other haemagglutinating coronaviruses, J. Gen. Virol., 83, 2411, 10.1099/0022-1317-83-10-2411 Schultze, 1992, Bovine coronavirus uses N-acetyl-9-O-acetylneuraminic acid as a receptor determinant to initiate the infection of cultured cells, J. Gen. Virol., 73, 901, 10.1099/0022-1317-73-4-901 Schwarz, 1990, Murine coronavirus nonstructural protein ns2 is not essential for virus replication in transformed cells, J. Virol., 64, 4784, 10.1128/JVI.64.10.4784-4791.1990 Senanayake, 1992, The nucleocapsid protein gene of bovine coronavirus is bicistronic, J. Virol., 66, 5277, 10.1128/JVI.66.9.5277-5283.1992 Smits, 2005, Nidovirus Sialate-O-Acetylesterases: evolution and substrate specificity of coronaviral and toroviral receptor-destroying enzymes, J. Biol. Chem., 280, 6933, 10.1074/jbc.M409683200 Spaan, 1988, Coronaviruses: structure and genome expression, J. Gen. Virol., 69, 2939, 10.1099/0022-1317-69-12-2939 St.-Jean, 2004, Human respiratory coronavirus OC43: Genetic stability and neuroinvasion, J. Virol., 78, 8824, 10.1128/JVI.78.16.8824-8834.2004 Thompson, 1997, The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools, Nucl. Acids Res., 25, 4876, 10.1093/nar/25.24.4876 Tsunemitsu, 1995, Antigenic and biological comparisons of bovine coronaviruses derived from neonatal calf diarrhea and winter dysentery of adult cattle, Arch. Virol., 140, 1303, 10.1007/BF01322757 Vennema, 1996, Nucleocapsid-independent assembly of coronavirus-like particles by co-expression of viral envelope protein genes, EMBO J., 15, 2020, 10.1002/j.1460-2075.1996.tb00553.x Vijgen, 2005, Complete genomic sequence of human coronavirus OC43: molecular clock analysis suggests a relatively recent zoonotic coronavirus transmission event, J. Virol., 79, 1595, 10.1128/JVI.79.3.1595-1604.2005 Woo, 2005, Characterization and complete genome sequence of a novel coronavirus, coronavirus HKU1, from patients with pneumonia, J. Virol., 79, 884, 10.1128/JVI.79.2.884-895.2005 Yokomori, 1991, Mouse hepatitis virus S RNA sequence reveals that nonstructural proteins ns4 and ns5a are not essential for murine coronavirus replication, J. Virol., 65, 5605, 10.1128/JVI.65.10.5605-5608.1991 Zuniga, 2004, Sequence motifs involved in the regulation of discontinuous coronavirus subgenomic RNA synthesis, J. Virol., 78, 980, 10.1128/JVI.78.2.980-994.2004