Ion Channels in Plant Bioenergetic Organelles, Chloroplasts and Mitochondria: From Molecular Identification to Function
Tài liệu tham khảo
Abrecht, 2000, Purification and characterization of two voltage-dependent anion channel isoforms from plant seeds, Plant Physiol., 124, 1181, 10.1104/pp.124.3.1181
Agarwal, 2014, Structure-function of cyanobacterial outer-membrane protein, Slr1270: homolog of Escherichia coli drug export/colicin import protein, TolC, FEBS Lett., 588, 3793, 10.1016/j.febslet.2014.08.028
Akai, 2011, Plasma membrane aquaporin AqpZ protein is essential for glucose metabolism during photomixotrophic growth of Synechocystis sp. PCC 6803, J. Biol. Chem., 286, 25224, 10.1074/jbc.M111.236380
Akai, 2012, Aquaporin AqpZ is involved in cell volume regulation and sensitivity to osmotic stress in Synechocystis sp. strain PCC 6803, J. Bacteriol., 194, 6828, 10.1128/JB.01665-12
Aldakkak, 2010, Mitochondrial matrix K+ flux independent of large-conductance Ca2+-activated K+ channel opening, Am. J. Physiol. Cell Physiol., 298, C530, 10.1152/ajpcell.00468.2009
Aldridge, 2005, The molecular biology of plastid division in higher plants, J. Exp. Bot., 56, 1061, 10.1093/jxb/eri118
Araujo, 2014, On the role of plant mitochondrial metabolism and its impact on photosynthesis in both optimal and sub-optimal growth conditions, Photosynth. Res., 119, 141, 10.1007/s11120-013-9807-4
Armbruster, 2014, Ion antiport accelerates photosynthetic acclimation in fluctuating light environments, Nat. Commun., 5, 5439, 10.1038/ncomms6439
Arpagaus, 2002, Occurrence and characteristics of the mitochondrial permeability transition in plants, J. Biol. Chem., 277, 1780, 10.1074/jbc.M109416200
Azad, 2011, Functional characterization and hyperosmotic regulation of aquaporin in Synechocystis sp. PCC 6803, Plant Sci., 180, 375, 10.1016/j.plantsci.2010.10.010
Bachin, 2015, Mechanosensitive ion channel MscL controls ionic fluxes during cold and heat stress in Synechocystis, FEMS Microbiol. Lett., 362, fnv090, 10.1093/femsle/fnv090
Bailleul, 2015, Energetic coupling between plastids and mitochondria drives CO2 assimilation in diatoms, Nature, 524, 366, 10.1038/nature14599
Balderas, 2015, Mitochondrial BKCa channel, Front. Physiol., 6, 104, 10.3389/fphys.2015.00104
Balsera, 2009, Characterization of Tic110, a channel-forming protein at the inner envelope membrane of chloroplasts, unveils a response to Ca(2+) and a stromal regulatory disulfide bridge, J. Biol. Chem., 284, 2603, 10.1074/jbc.M807134200
Balsera, 2009, Protein import machineries in endosymbiotic organelles, Cell Mol. Life Sci., 66, 1903, 10.1007/s00018-009-8644-2
Baughman, 2011, Integrative genomics identifies MCU as an essential component of the mitochondrial calcium uniporter, Nature, 476, 341, 10.1038/nature10234
Bayer, 2014, Higher plant proteins of cyanobacterial origin: are they or are they not preferentially targeted to chloroplasts?, Mol. Plant, 7, 1797, 10.1093/mp/ssu095
Bednarczyk, 2013, Putative structural and functional coupling of the mitochondrial BK channel to the respiratory chain, PLoS One, 8, e68125, 10.1371/journal.pone.0068125
Beebo, 2013, Assessment of the requirement for aquaporins in the thylakoid membrane of plant chloroplasts to sustain photosynthetic water oxidation, FEBS Lett., 587, 2083, 10.1016/j.febslet.2013.05.046
Berkelman, 1994, The pacL gene of Synechococcus sp. strain PCC 7942 encodes a Ca(2+)-transporting ATPase, J. Bacteriol., 176, 4430, 10.1128/jb.176.14.4430-4436.1994
Berkowitz, 1993, Magnesium, potassium flux and photosynthesis, Magnes. Res., 6, 257
Bernardi, 1999, Mitochondrial transport of cations: channels, exchangers, and permeability transition, Physiol. Rev., 79, 1127, 10.1152/physrev.1999.79.4.1127
Bernardi, 2015, Commentary: SPG7 is an essential and conserved component of the mitochondrial permeability transition pore, Front. Physiol., 6, 320, 10.3389/fphys.2015.00320
Bernardi, 2015, The mitochondrial permeability transition pore: channel formation by F-ATP synthase, integration in signal transduction, and role in pathophysiology, Physiol. Rev., 95, 1111, 10.1152/physrev.00001.2015
Berrier, 2004, Cell-free synthesis of a functional ion channel in the absence of a membrane and in the presence of detergent, Biochemistry, 43, 12585, 10.1021/bi049049y
Berrier, 2015, Channel characteristics of VDAC-3 from Arabidopsis thaliana, Biochem. Biophys. Res. Commun., 459, 24, 10.1016/j.bbrc.2015.02.034
Berry, 2003, Potassium uptake in the unicellular cyanobacterium Synechocystis sp. strain PCC 6803 mainly depends on a Ktr-like system encoded by slr1509 (ntpJ), FEBS Lett., 548, 53, 10.1016/S0014-5793(03)00729-4
Blum, 2009, MultiLoc2: integrating phylogeny and Gene Ontology terms improves subcellular protein localization prediction, BMC Bioinformatics, 10, 274, 10.1186/1471-2105-10-274
Bocquet, 2009, X-ray structure of a pentameric ligand-gated ion channel in an apparently open conformation, Nature, 457, 111, 10.1038/nature07462
Bolter, 2001, Ion channels in the outer membranes of chloroplasts and mitochondria: open doors or regulated gates?, EMBO J., 20, 935, 10.1093/emboj/20.5.935
Bolter, 1998, Origin of a chloroplast protein importer, Proc. Natl. Acad. Sci. USA, 95, 15831, 10.1073/pnas.95.26.15831
Bose, 2011, Calcium efflux systems in stress signaling and adaptation in plants, Front. Plant Sci., 2, 85, 10.3389/fpls.2011.00085
Boussac, 1989, EPR signals from modified charge accumulation states of the oxygen evolving enzyme in Ca2+-deficient photosystem II, Biochemistry, 28, 8984, 10.1021/bi00449a005
Braun, 2014, Viral potassium channels as a robust model system for studies of membrane-protein interaction, Biochim. Biophys. Acta, 1838, 1096, 10.1016/j.bbamem.2013.06.010
Bulychev, 1976, Effect of ionophores A23187 and nigericin on the light-induced redistribution of Mg2+, K+ and H+ across the thylakoid membrane, Biochim. Biophys. Acta, 449, 48, 10.1016/0005-2728(76)90006-2
Candat, 2013, Experimental determination of organelle targeting-peptide cleavage sites using transient expression of green fluorescent protein translational fusions, Anal. Biochem., 434, 44, 10.1016/j.ab.2012.10.040
Carraretto, 2013, A thylakoid-located two-pore K+ channel controls photosynthetic light utilization in plants, Science, 342, 114, 10.1126/science.1242113
Carrie, 2010, An in silico analysis of the mitochondrial protein import apparatus of plants, BMC Plant Biol., 10, 249, 10.1186/1471-2229-10-249
Chang, 2009, Proteomic profiling of tandem affinity purified 14-3-3 protein complexes in Arabidopsis thaliana, Proteomics, 9, 2967, 10.1002/pmic.200800445
Checchetto, 2012, Thylakoid potassium channel is required for efficient photosynthesis in cyanobacteria, Proc. Natl. Acad. Sci. USA, 109, 11043, 10.1073/pnas.1205960109
Checchetto, 2013, Functional characterization and determination of the physiological role of a calcium-dependent potassium channel from cyanobacteria, Plant Physiol., 162, 953, 10.1104/pp.113.215129
Checchetto, 2013, Regulation of photosynthesis by ion channels in cyanobacteria and higher plants, Biophys. Chem., 182, 51, 10.1016/j.bpc.2013.06.006
Chen, 1999, Functional characterization of a potassium-selective prokaryotic glutamate receptor, Nature, 402, 817, 10.1038/45568
Chiu, 2002, Phylogenetic and expression analysis of the glutamate-receptor-like gene family in Arabidopsis thaliana, Mol. Biol. Evol., 19, 1066, 10.1093/oxfordjournals.molbev.a004165
Cho, 2012, Vacuolar CAX1 and CAX3 influence auxin transport in guard cells via regulation of apoplastic pH, Plant Physiol., 160, 1293, 10.1104/pp.112.201442
Choi, 2014, Salt stress-induced Ca2+ waves are associated with rapid, long-distance root-to-shoot signaling in plants, Proc. Natl. Acad. Sci. USA, 111, 6497, 10.1073/pnas.1319955111
Crofts, 1983, The role of the quinone pool in the cyclic electron-transfer chain of Rhodopseudomonas sphaeroides: a modified Q-cycle mechanism, Biochim. Biophys. Acta, 723, 202, 10.1016/0005-2728(83)90120-2
Day, 2014, Evolution and targeting of Omp85 homologs in the chloroplast outer envelope membrane, Front. Plant Sci., 5, 535, 10.3389/fpls.2014.00535
De Marchi, 2010, ATP-sensitive cation-channel in wheat (Triticum durum Desf.): identification and characterization of a plant mitochondrial channel by patch-clamp, Cell Physiol. Biochem., 26, 975, 10.1159/000324010
De Stefani, 2011, A forty-kilodalton protein of the inner membrane is the mitochondrial calcium uniporter, Nature, 476, 336, 10.1038/nature10230
De Stefani, 2015, Structure and function of the mitochondrial calcium uniporter complex, Biochim. Biophys. Acta, 1853, 2006, 10.1016/j.bbamcr.2015.04.008
Deniaud, 2010, Crystallization of the membrane protein hVDAC1 produced in cell-free system, Biochim. Biophys. Acta, 1798, 1540, 10.1016/j.bbamem.2010.04.010
Dieter, 1980, Ca2+ transport in mitochondrial and microsomal fractions from higher plants, Planta, 150, 1, 10.1007/BF00385606
Dodd, 2010, The language of calcium signaling, Annu. Rev. Plant Biol., 61, 593, 10.1146/annurev-arplant-070109-104628
Drissi, 2013, Proteomics methods for subcellular proteome analysis, FEBS J., 280, 5626, 10.1111/febs.12502
Duby, 2001, Hydrophobic residues within the predicted N-terminal amphiphilic alpha-helix of a plant mitochondrial targeting presequence play a major role in in vivo import, Plant J., 27, 539, 10.1046/j.1365-313X.2001.01098.x
Duby, 2008, AtKC1, a conditionally targeted Shaker-type subunit, regulates the activity of plant K+ channels, Plant J., 53, 115, 10.1111/j.1365-313X.2007.03324.x
Duy, 2007, Solute channels of the outer membrane: from bacteria to chloroplasts, Biol. Chem., 388, 879, 10.1515/BC.2007.120
Eckart, 2002, A Toc75-like protein import channel is abundant in chloroplasts, EMBO Rep., 3, 557, 10.1093/embo-reports/kvf110
Elter, 2007, A plant homolog of animal chloride intracellular channels (CLICs) generates an ion conductance in heterologous systems, J. Biol. Chem., 282, 8786, 10.1074/jbc.M607241200
Emanuelsson, 1999, ChloroP, a neural network-based method for predicting chloroplast transit peptides and their cleavage sites, Protein Sci., 8, 978, 10.1110/ps.8.5.978
Emanuelsson, 2000, Predicting subcellular localization of proteins based on their N-terminal amino acid sequence, J. Mol. Biol., 300, 1005, 10.1006/jmbi.2000.3903
Enz, 1993, Ion channels in the thylakoid membrane (a patch-clamp study), Biochim. Biophys. Acta, 1143, 67, 10.1016/0005-2728(93)90217-4
Ettinger, 1999, Identification of a Ca2+/H+ antiport in the plant chloroplast thylakoid membrane, Plant Physiol., 119, 1379, 10.1104/pp.119.4.1379
Ezure, 2014, A cell-free translocation system using extracts of cultured insect cells to yield functional membrane proteins, PLoS One, 9, e112874, 10.1371/journal.pone.0112874
Facchinelli, 2011, The metabolite transporters of the plastid envelope: an update, Front. Plant Sci., 2, 50, 10.3389/fpls.2011.00050
Ferro, 2010, AT_CHLORO, a comprehensive chloroplast proteome database with subplastidial localization and curated information on envelope proteins, Mol. Cell. Proteomics, 9, 1063, 10.1074/mcp.M900325-MCP200
Finazzi, 2015, Ions channels/transporters and chloroplast regulation, Cell Calcium, 58, 86, 10.1016/j.ceca.2014.10.002
Foskett, 2015, The mitochondrial Ca(2+) uniporter complex, J. Mol. Cell. Cardiol., 78, 3, 10.1016/j.yjmcc.2014.11.015
Frietsch, 2007, A cyclic nucleotide-gated channel is essential for polarized tip growth of pollen, Proc. Natl. Acad. Sci. USA, 104, 14531, 10.1073/pnas.0701781104
Fristedt, 2009, Phosphorylation of photosystem II controls functional macroscopic folding of photosynthetic membranes in Arabidopsis, Plant Cell, 21, 3950, 10.1105/tpc.109.069435
Fujimori, 2005, The mutant of sll1961, which encodes a putative transcriptional regulator, has a defect in regulation of photosystem stoichiometry in the cyanobacterium Synechocystis sp. PCC 6803, Plant Physiol., 139, 408, 10.1104/pp.105.064782
Fuks, 1995, A voltage-dependent porin-like channel in the inner envelope membrane of plant chloroplasts, J. Biol. Chem., 270, 9947, 10.1074/jbc.270.17.9947
Giorgio, 2013, Dimers of mitochondrial ATP synthase form the permeability transition pore, Proc. Natl. Acad. Sci. USA, 110, 5887, 10.1073/pnas.1217823110
Goetze, 2006, OEP37 is a new member of the chloroplast outer membrane ion channels, J. Biol. Chem., 281, 17989, 10.1074/jbc.M600700200
Goetze, 2015, Oep23 forms an ion channel in the chloroplast outer envelope, BMC Plant Biol., 15, 47, 10.1186/s12870-015-0445-1
Hagemann, 2011, Molecular biology of cyanobacterial salt acclimation, FEMS Microbiol. Rev., 35, 87, 10.1111/j.1574-6976.2010.00234.x
Hamamoto, 2014, Organelle-localized potassium transport systems in plants, J. Plant Physiol., 171, 743, 10.1016/j.jplph.2013.09.022
Hamilton, 2015, United in diversity: mechanosensitive ion channels in plants, Annu. Rev. Plant Biol., 66, 113, 10.1146/annurev-arplant-043014-114700
Hanson, 1965, Action of calcium on corn mitochondria, Plant Physiol., 40, 1033, 10.1104/pp.40.6.1033
Haswell, 2006, MscS-like proteins control plastid size and shape in Arabidopsis thaliana, Curr. Biol., 16, 1, 10.1016/j.cub.2005.11.044
Hedrich, 2012, Ion channels in plants, Physiol. Rev., 92, 1777, 10.1152/physrev.00038.2011
Heiber, 1995, Ion channels in the chloroplast envelope membrane, Biochemistry, 34, 15906, 10.1021/bi00049a005
Heins, 2002, The preprotein conducting channel at the inner envelope membrane of plastids, EMBO J., 21, 2616, 10.1093/emboj/21.11.2616
Held, 2011, Calcium-dependent modulation and plasma membrane targeting of the AKT2 potassium channel by the CBL4/CIPK6 calcium sensor/protein kinase complex, Cell Res., 21, 1116, 10.1038/cr.2011.50
Hennon, 2015, YidC/Alb3/Oxa1 family of insertases, J. Biol. Chem., 290, 14866, 10.1074/jbc.R115.638171
Herzig, 2012, Identification and functional expression of the mitochondrial pyruvate carrier, Science, 337, 93, 10.1126/science.1218530
Hihara, 2003, DNA microarray analysis of redox-responsive genes in the genome of the cyanobacterium Synechocystis sp. strain PCC 6803, J. Bacteriol., 185, 1719, 10.1128/JB.185.5.1719-1725.2003
Hilf, 2009, Structure of a potentially open state of a proton-activated pentameric ligand-gated ion channel, Nature, 457, 115, 10.1038/nature07461
Hind, 1974, Light-dependent redistribution of ions in suspensions of chloroplast thylakoid membranes, Proc. Natl. Acad. Sci. USA, 71, 1484, 10.1073/pnas.71.4.1484
Hinnah, 1998, Thylakoid membranes contain a high-conductance channel, Eur. J. Biochem., 253, 606, 10.1046/j.1432-1327.1998.2530606.x
Hochmal, 2015, Calcium-dependent regulation of photosynthesis, Biochim. Biophys. Acta, 1847, 993, 10.1016/j.bbabio.2015.02.010
Homble, 2012, Plant VDAC: facts and speculations, Biochim. Biophys. Acta, 1818, 1486, 10.1016/j.bbamem.2011.11.028
Hong-Hermesdorf, 2015, Subcellular metal imaging identifies dynamic sites of Cu accumulation in Chlamydomonas, Nat. Chem. Biol., 11, 235, 10.1038/nchembio0315-235c
Hoogenboom, 2007, The supramolecular assemblies of voltage-dependent anion channels in the native membrane, J. Mol. Biol., 370, 246, 10.1016/j.jmb.2007.04.073
Horton, 2007, WoLF PSORT: protein localization predictor, Nucleic Acids Res., 35, W585, 10.1093/nar/gkm259
Huang, 1993, Characterization of a gene encoding a Ca(2+)-ATPase-like protein in the plastid envelope, Proc. Natl. Acad. Sci. USA, 90, 10066, 10.1073/pnas.90.21.10066
Huang, 2012, Calcium and calcium receptor CAS promote Arabidopsis thaliana de-etiolation, Physiol. Plant., 144, 73, 10.1111/j.1399-3054.2011.01523.x
Ishikawa, 2009, Orthogenomics of photosynthetic organisms: bioinformatic and experimental analysis of chloroplast proteins of endosymbiont origin in Arabidopsis and their counterparts in Synechocystis, Plant Cell Physiol., 50, 773, 10.1093/pcp/pcp027
Jarmuszkiewicz, 2010, Potassium channels in the mitochondria of unicellular eukaryotes and plants, FEBS Lett., 584, 2057, 10.1016/j.febslet.2010.01.023
Jarvis, 2013, Biogenesis and homeostasis of chloroplasts and other plastids, Nat. Rev. Mol. Cell Biol., 14, 787, 10.1038/nrm3702
Jayaram, 2011, Structure of a slow CLC Cl(-)/H+ antiporter from a cyanobacterium, Biochemistry, 50, 788, 10.1021/bi1019258
Jeanguenin, 2011, AtKC1 is a general modulator of Arabidopsis inward Shaker channel activity, Plant J., 67, 570, 10.1111/j.1365-313X.2011.04617.x
Joliot, 1974, Flash-induced 519 nm absorption change in green algae, Biochim. Biophys. Acta, 357, 267, 10.1016/0005-2728(74)90066-8
Kaldenhoff, 2014, Aquaporins and membrane diffusion of CO2 in living organisms, Biochim. Biophys. Acta, 1840, 1592, 10.1016/j.bbagen.2013.09.037
Karim, 2014, The puzzle of chloroplast vesicle transport - involvement of GTPases, Front. Plant Sci., 5, 472, 10.3389/fpls.2014.00472
Karniely, 2005, Single translation–dual destination: mechanisms of dual protein targeting in eukaryotes, EMBO Rep., 6, 420, 10.1038/sj.embor.7400394
Kasahara, 2014, Mitochondria: from cell death executioners to regulators of cell differentiation, Trends Cell Biol., 24, 761, 10.1016/j.tcb.2014.08.005
Keeling, 2013, The number, speed, and impact of plastid endosymbioses in eukaryotic evolution, Annu. Rev. Plant Biol., 64, 583, 10.1146/annurev-arplant-050312-120144
Kessler, 1955, On the role of manganese in the oxygen-evolving system of photosynthesis, Arch. Biochem. Biophys., 59, 527, 10.1016/0003-9861(55)90519-1
Khan, 2013, New putative chloroplast vesicle transport components and cargo proteins revealed using a bioinformatics approach: an Arabidopsis model, PLoS One, 8, e59898, 10.1371/journal.pone.0059898
Kirichok, 2004, The mitochondrial calcium uniporter is a highly selective ion channel, Nature, 427, 360, 10.1038/nature02246
Konig, 2014, The mitochondrial lysine acetylome of Arabidopsis, Mitochondrion, 19, 252, 10.1016/j.mito.2014.03.004
Koszela-Piotrowska, 2009, A large-conductance calcium-activated potassium channel in potato (Solanum tuberosum) tuber mitochondria, Biochem. J., 424, 307, 10.1042/BJ20090991
Koulintchenko, 2003, Plant mitochondria actively import DNA via the permeability transition pore complex, EMBO J., 22, 1245, 10.1093/emboj/cdg128
Kovacs-Bogdan, 2014, Reconstitution of the mitochondrial calcium uniporter in yeast, Proc. Natl. Acad. Sci. USA, 111, 8985, 10.1073/pnas.1400514111
Kugler, 2009, Salt-dependent regulation of a CNG channel subfamily in Arabidopsis, BMC Plant Biol., 9, 140, 10.1186/1471-2229-9-140
Kumazaki, 2014, Structural basis of Sec-independent membrane protein insertion by YidC, Nature, 509, 516, 10.1038/nature13167
Kunz, 2014, Plastidial transporters KEA1, -2, and -3 are essential for chloroplast osmoregulation, integrity, and pH regulation in Arabidopsis, Proc. Natl. Acad. Sci. USA, 111, 7480, 10.1073/pnas.1323899111
Kuo, 2005, Prokaryotic K(+) channels: from crystal structures to diversity, FEMS Microbiol. Rev., 29, 961, 10.1016/j.femsre.2005.03.003
Kwon, 2010, Systematic cyanobacterial membrane proteome analysis by combining acid hydrolysis and digestive enzymes with nano-liquid chromatography-Fourier transform mass spectrometry, J. Chromatogr. A, 1217, 285, 10.1016/j.chroma.2009.11.045
Ladwig, 2015, Phytosulfokine regulates growth in Arabidopsis through a response module at the plasma membrane that includes CYCLIC NUCLEOTIDE-GATED CHANNEL17, H+-ATPase, and BAK1, Plant Cell, 27, 1718, 10.1105/tpc.15.00306
Laloi, 1999, Plant mitochondrial carriers: an overview, Cell Mol. Life Sci., 56, 918, 10.1007/s000180050484
Lee, 2009, Pathogen inducible voltage-dependent anion channel (AtVDAC) isoforms are localized to mitochondria membrane in Arabidopsis, Mol. Cell, 27, 321, 10.1007/s10059-009-0041-z
Lee, 2013, Recent advances in the composition and heterogeneity of the Arabidopsis mitochondrial proteome, Front. Plant Sci., 4, 4, 10.3389/fpls.2013.00004
Leister, 2003, Chloroplast research in the genomic age, Trends Genet., 19, 47, 10.1016/S0168-9525(02)00003-3
Li, 2013, Glutamate receptor-like channel3.3 is involved in mediating glutathione-triggered cytosolic calcium transients, transcriptional changes, and innate immunity responses in Arabidopsis, Plant Physiol., 162, 1497, 10.1104/pp.113.217208
Linka, 2005, Shuffling ammonia between mitochondria and plastids during photorespiration, Trends Plant Sci., 10, 461, 10.1016/j.tplants.2005.08.002
Linka, 2010, Intracellular metabolite transporters in plants, Mol. Plant, 3, 21, 10.1093/mp/ssp108
Logan, 2003, Mitochondrial and cytosolic calcium dynamics are differentially regulated in plants, Plant Physiol., 133, 21, 10.1104/pp.103.026047
Loro, 2012, Targeting of Cameleons to various subcellular compartments reveals a strict cytoplasmic/mitochondrial Ca2+ handling relationship in plant cells, Plant J., 71, 1, 10.1111/j.1365-313X.2012.04968.x
Loro, 2013, The D3cpv Cameleon reports Ca2+ dynamics in plant mitochondria with similar kinetics of the YC3.6 Cameleon, but with a lower sensitivity, J. Microsc., 249, 8, 10.1111/j.1365-2818.2012.03683.x
Lurin, 2000, CLC-Nt1, a putative chloride channel protein of tobacco, co-localizes with mitochondrial membrane markers, Biochem. J., 348, 291, 10.1042/bj3480291
Maierhofer, 2014, A single-pore residue renders the Arabidopsis root anion channel SLAH2 highly nitrate selective, Plant Cell, 26, 2554, 10.1105/tpc.114.125849
Malcolm, 2012, Ss-bCNGa: a unique member of the bacterial cyclic nucleotide gated (bCNG) channel family that gates in response to mechanical tension, Eur. Biophys. J., 41, 1003, 10.1007/s00249-012-0855-z
Marmagne, 2007, Two members of the Arabidopsis CLC (chloride channel) family, AtCLCe and AtCLCf, are associated with thylakoid and Golgi membranes, respectively, J. Exp. Bot., 58, 3385, 10.1093/jxb/erm187
Martin, 1998, Gene transfer to the nucleus and the evolution of chloroplasts, Nature, 393, 162, 10.1038/30234
Martinoia, 2012, Vacuolar transporters in their physiological context, Annu. Rev. Plant Biol., 63, 183, 10.1146/annurev-arplant-042811-105608
Matkovic, 2011, Ion conductance pathways in potato tuber (Solanum tuberosum) inner mitochondrial membrane, Biochim. Biophys. Acta, 1807, 275, 10.1016/j.bbabio.2010.12.001
Matsuda, 2006, Ktr-mediated potassium transport, a major pathway for potassium uptake, is coupled to a proton gradient across the membrane in Synechocystis sp. PCC 6803, Biosci. Biotechnol. Biochem., 70, 273, 10.1271/bbb.70.273
Maurel, 1993, The vacuolar membrane protein gamma-TIP creates water specific channels in Xenopus oocytes, EMBO J., 12, 2241, 10.1002/j.1460-2075.1993.tb05877.x
Maurel, 2008, Plant aquaporins: membrane channels with multiple integrated functions, Annu. Rev. Plant Biol., 59, 595, 10.1146/annurev.arplant.59.032607.092734
Mayer, 2001, Mechanisms for ligand binding to GluR0 ion channels: crystal structures of the glutamate and serine complexes and a closed apo state, J. Mol. Biol., 311, 815, 10.1006/jmbi.2001.4884
McAinsh, 2009, Shaping the calcium signature, New Phytol., 181, 275, 10.1111/j.1469-8137.2008.02682.x
Mehlmer, 2012, A toolset of aequorin expression vectors for in planta studies of subcellular calcium concentrations in Arabidopsis thaliana, J. Exp. Bot., 63, 1751, 10.1093/jxb/err406
Mei, 2009, Root development under metal stress in Arabidopsis thaliana requires the H+/cation antiporter CAX4, New Phytol., 183, 95, 10.1111/j.1469-8137.2009.02831.x
Meyerhoff, 2005, AtGLR3.4, a glutamate receptor channel-like gene is sensitive to touch and cold, Planta, 222, 418, 10.1007/s00425-005-1551-3
Michal Johnson, 2014, An Arabidopsis mutant impaired in intracellular calcium elevation is sensitive to biotic and abiotic stress, BMC Plant Biol., 14, 162, 10.1186/1471-2229-14-162
Michaud, 2014, Differential targeting of VDAC3 mRNA isoforms influences mitochondria morphology, Proc. Natl. Acad. Sci. USA, 111, 8991, 10.1073/pnas.1402588111
Millar, 2005, The plant mitochondrial proteome, Trends Plant Sci., 10, 36, 10.1016/j.tplants.2004.12.002
Millar, 2011, Organization and regulation of mitochondrial respiration in plants, Annu. Rev. Plant Biol., 62, 79, 10.1146/annurev-arplant-042110-103857
Nanatani, 2013, Characterization of the role of a mechanosensitive channel in osmotic down shock adaptation in Synechocystis sp PCC 6803, Channels (Austin), 7, 238, 10.4161/chan.25350
Nanatani, 2015, Comparative analysis of kdp and ktr mutants reveals distinct roles of the potassium transporters in the model cyanobacterium Synechocystis sp. strain PCC 6803, J. Bacteriol., 197, 676, 10.1128/JB.02276-14
Nanjo, 2006, Rice plastidial N-glycosylated nucleotide pyrophosphatase/phosphodiesterase is transported from the ER-Golgi to the chloroplast through the secretory pathway, Plant Cell, 18, 2582, 10.1105/tpc.105.039891
Nazarenko, 2003, Calcium release from Synechocystis cells induced by depolarization of the plasma membrane: MscL as an outward Ca2+ channel, Microbiology, 149, 1147, 10.1099/mic.0.26074-0
Neuhaus, 2000, Solute pores, ion channels, and metabolite transporters in the outer and inner envelope membranes of higher plant plastids, Biochim. Biophys. Acta, 1465, 307, 10.1016/S0005-2736(00)00146-2
Nieves-Cordones, 2014, Distinct amino acids in the C-linker domain of the Arabidopsis K+ channel KAT2 determine its subcellular localization and activity at the plasma membrane, Plant Physiol., 164, 1415, 10.1104/pp.113.229757
Niyogi, 2013, Evolution of flexible non-photochemical quenching mechanisms that regulate light harvesting in oxygenic photosynthesis, Curr. Opin. Plant Biol., 16, 307, 10.1016/j.pbi.2013.03.011
Nomura, 2014, Calcium signaling in plant endosymbiotic organelles: mechanism and role in physiology, Mol. Plant, 7, 1094, 10.1093/mp/ssu020
Nomura, 2008, Evidence for chloroplast control of external Ca2+-induced cytosolic Ca2+ transients and stomatal closure, Plant J., 53, 988, 10.1111/j.1365-313X.2007.03390.x
Nomura, 2012, Chloroplast-mediated activation of plant immune signalling in Arabidopsis, Nat. Commun., 3, 926, 10.1038/ncomms1926
Nouet, 2011, Chloroplastic and mitochondrial metal homeostasis, Trends Plant Sci., 16, 395, 10.1016/j.tplants.2011.03.005
Oh, 2015, Targeting and biogenesis of transporters and channels in chloroplast envelope membranes: unsolved questions, Cell Calcium, 58, 122, 10.1016/j.ceca.2014.10.012
Osteryoung, 2014, Division and dynamic morphology of plastids, Annu. Rev. Plant Biol., 65, 443, 10.1146/annurev-arplant-050213-035748
Ozaki, 2007, Large-scale analysis of chlorophyll fluorescence kinetics in Synechocystis sp. PCC 6803: identification of the factors involved in the modulation of photosystem stoichiometry, Plant Cell Physiol., 48, 451, 10.1093/pcp/pcm015
Pagliarini, 2008, A mitochondrial protein compendium elucidates complex I disease biology, Cell, 134, 112, 10.1016/j.cell.2008.06.016
Paila, 2015, New insights into the mechanism of chloroplast protein import and its integration with protein quality control, organelle biogenesis and development, J. Mol. Biol., 427, 1038, 10.1016/j.jmb.2014.08.016
Pan, 2014, Arabidopsis voltage-dependent anion channel 1 (AtVDAC1) is required for female development and maintenance of mitochondrial functions related to energy-transaction, PLoS One, 9, e106941, 10.1371/journal.pone.0106941
Pastore, 1999, The existence of the K(+) channel in plant mitochondria, J. Biol. Chem., 274, 26683, 10.1074/jbc.274.38.26683
Pastore, 2013, The uniqueness of the plant mitochondrial potassium channel, BMB Rep., 46, 391, 10.5483/BMBRep.2013.46.8.075
Patron, 2014, MICU1 and MICU2 finely tune the mitochondrial Ca2+ uniporter by exerting opposite effects on MCU activity, Mol. Cell, 53, 726, 10.1016/j.molcel.2014.01.013
Paupe, 2015, CCDC90A (MCUR1) is a cytochrome c oxidase assembly factor and not a regulator of the mitochondrial calcium uniporter, Cell Metab., 21, 109, 10.1016/j.cmet.2014.12.004
Paynter, 2010, Functional complementation and genetic deletion studies of KirBac channels: activatory mutations highlight gating-sensitive domains, J. Biol. Chem., 285, 40754, 10.1074/jbc.M110.175687
Peltier, 2004, New functions of the thylakoid membrane proteome of Arabidopsis thaliana revealed by a simple, fast, and versatile fractionation strategy, J. Biol. Chem., 279, 49367, 10.1074/jbc.M406763200
Perocchi, 2010, MICU1 encodes a mitochondrial EF hand protein required for Ca(2+) uptake, Nature, 467, 291, 10.1038/nature09358
Petroutsos, 2011, The chloroplast calcium sensor CAS is required for photoacclimation in Chlamydomonas reinhardtii, Plant Cell, 23, 2950, 10.1105/tpc.111.087973
Petrussa, 2004, The K(ATP)+ channel is involved in a low-amplitude permeability transition in plant mitochondria, Mitochondrion, 3, 297, 10.1016/j.mito.2004.01.002
Petrussa, 2008, Activity of a KATP+ channel in Arum spadix mitochondria during thermogenesis, J. Plant Physiol., 165, 1360, 10.1016/j.jplph.2007.10.012
Pfeil, 2014, Function and evolution of channels and transporters in photosynthetic membranes, Cell Mol. Life Sci., 71, 979, 10.1007/s00018-013-1412-3
Pisareva, 2011, Model for membrane organization and protein sorting in the cyanobacterium Synechocystis sp. PCC 6803 inferred from proteomics and multivariate sequence analyses, J. Proteome Res., 10, 3617, 10.1021/pr200268r
Pottosin, 1992, Single channel recording in the chloroplast envelope, FEBS Lett., 308, 87, 10.1016/0014-5793(92)81057-S
Pottosin, 1993, One of the chloroplast envelope ion channels is probably related to the mitochondrial VDAC, FEBS Lett., 330, 211, 10.1016/0014-5793(93)80275-Y
Pottosin, 1995, Patch clamp study of the voltage-dependent anion channel in the thylakoid membrane, J. Membr. Biol., 148, 143, 10.1007/BF00207270
Pottosin, 1996, Ion channel permeable for divalent and monovalent cations in native spinach thylakoid membranes, J. Membr. Biol., 152, 223, 10.1007/s002329900100
Pottosin, 2005, Fast-activating channel controls cation fluxes across the native chloroplast envelope, J. Membr. Biol., 204, 145, 10.1007/s00232-005-0758-3
Preston, 1992, Appearance of water channels in Xenopus oocytes expressing red cell CHIP28 protein, Science, 256, 385, 10.1126/science.256.5055.385
Qin, 2009, Oxidative damage of mitochondrial proteins contributes to fruit senescence: a redox proteomics analysis, J. Proteome Res., 8, 2449, 10.1021/pr801046m
Qiu, 2013, Assessing the bacterial contribution to the plastid proteome, Trends Plant Sci., 18, 680, 10.1016/j.tplants.2013.09.007
Reintanz, 2002, AtKC1, a silent Arabidopsis potassium channel alpha -subunit modulates root hair K+ influx, Proc. Natl. Acad. Sci. USA, 99, 4079, 10.1073/pnas.052677799
Rhee, 2013, Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging, Science, 339, 1328, 10.1126/science.1230593
Rizzuto, 2012, Mitochondria as sensors and regulators of calcium signalling, Nat. Rev. Mol. Cell Biol., 13, 566, 10.1038/nrm3412
Robert, 2012, Voltage-dependent-anion-channels (VDACs) in Arabidopsis have a dual localization in the cell but show a distinct role in mitochondria, Plant Mol. Biol., 78, 431, 10.1007/s11103-012-9874-5
Rocchetti, 2012, The putative K(+) channel subunit AtKCO3 forms stable dimers in Arabidopsis, Front. Plant Sci., 3, 251, 10.3389/fpls.2012.00251
Rocha, 2012, The role of calcium in chloroplasts–an intriguing and unresolved puzzle, Protoplasma, 249, 957, 10.1007/s00709-011-0373-3
Rolland, 2012, The biosynthetic capacities of the plastids and integration between cytoplasmic and chloroplast processes, Annu. Rev. Genet., 46, 233, 10.1146/annurev-genet-110410-132544
Safiarian, 2015, Lost in traffic? the K(+) channel of lily pollen, LilKT1, is detected at the endomembranes inside yeast cells, tobacco leaves, and lily pollen, Front. Plant Sci., 6, 47, 10.3389/fpls.2015.00047
Sai, 2002, Dark-stimulated calcium ion fluxes in the chloroplast stroma and cytosol, Plant Cell, 14, 1279, 10.1105/tpc.000653
Salvi, 2011, Preparation of envelope membrane fractions from Arabidopsis chloroplasts for proteomic analysis and other studies, Methods Mol. Biol., 775, 189, 10.1007/978-1-61779-237-3_10
Sato, 2007, A large-scale protein protein interaction analysis in Synechocystis sp. PCC6803, DNA Res., 14, 207, 10.1093/dnares/dsm021
Saviani, 2002, Participation of the mitochondrial permeability transition pore in nitric oxide-induced plant cell death, FEBS Lett., 510, 136, 10.1016/S0014-5793(01)03230-6
Schleiff, 2011, Common ground for protein translocation: access control for mitochondria and chloroplasts, Nat. Rev. Mol. Cell Biol., 12, 48, 10.1038/nrm3027
Schonknecht, 1988, A voltage-dependent chloride channel in the photosynthetic membrane of higher plant, Nature, 336, 589, 10.1038/336589a0
Schwacke, 2003, ARAMEMNON, a novel database for Arabidopsis integral membrane proteins, Plant Physiol., 131, 16, 10.1104/pp.011577
Shanmughapriya, 2015, SPG7 is an essential and conserved component of the mitochondrial permeability transition pore, Mol. Cell, 60, 47, 10.1016/j.molcel.2015.08.009
Shapiguzov, 2005, Osmotic shrinkage of cells of Synechocystis sp. PCC 6803 by water efflux via aquaporins regulates osmostress-inducible gene expression, Microbiology, 151, 447, 10.1099/mic.0.27530-0
Simm, 2013, Defining the core proteome of the chloroplast envelope membranes, Front. Plant Sci., 4, 11, 10.3389/fpls.2013.00011
Singh, 2013, MitoBK(Ca) is encoded by the Kcnma1 gene, and a splicing sequence defines its mitochondrial location, Proc. Natl. Acad. Sci. USA, 110, 10836, 10.1073/pnas.1302028110
Slavikova, 2005, Homologous and heterologous reconstitution of Golgi to chloroplast transport and protein import into the complex chloroplasts of Euglena, J. Cell Sci., 118, 1651, 10.1242/jcs.02277
Stael, 2012, Plant organellar calcium signalling: an emerging field, J. Exp. Bot., 63, 1525, 10.1093/jxb/err394
Stephan, 2014, Plant salt stress status is transmitted systemically via propagating calcium waves, Proc. Natl. Acad. Sci. USA, 111, 6126, 10.1073/pnas.1404895111
Strittmatter, 2010, The chloroplast protein import machinery: a review, Methods Mol. Biol., 619, 307, 10.1007/978-1-60327-412-8_18
Sweetlove, 2007, Isolation of intact, functional mitochondria from the model plant Arabidopsis thaliana, Methods Mol. Biol., 372, 125, 10.1007/978-1-59745-365-3_9
Szabo, 2014, Mitochondrial channels: ion fluxes and more, Physiol. Rev., 94, 519, 10.1152/physrev.00021.2013
Szewczyk, 2006, Mitochondrial potassium channels: from pharmacology to function, Biochim. Biophys. Acta, 1757, 715, 10.1016/j.bbabio.2006.05.002
Szewczyk, 2009, Mitochondrial potassium channels, IUBMB Life, 61, 134, 10.1002/iub.155
Takahashi, 2013, The functions of voltage-dependent anion channels in plants, Apoptosis, 18, 917, 10.1007/s10495-013-0845-3
Takano, 2006, The Arabidopsis major intrinsic protein NIP5;1 is essential for efficient boron uptake and plant development under boron limitation, Plant Cell, 18, 1498, 10.1105/tpc.106.041640
Tampieri, 2011, The activity of plant inner membrane anion channel (PIMAC) can be performed by a chloride channel (CLC) protein in mitochondria from seedlings of maize populations divergently selected for cold tolerance, J. Bioenerg. Biomembr., 43, 611, 10.1007/s10863-011-9386-z
Teardo, 2005, Localization of a putative ClC chloride channel in spinach chloroplasts, FEBS Lett., 579, 4991, 10.1016/j.febslet.2005.08.005
Teardo, 2010, Characterization of a plant glutamate receptor activity, Cell Physiol. Biochem., 26, 253, 10.1159/000320525
Teardo, 2011, Dual localization of plant glutamate receptor AtGLR3.4 to plastids and plasma membrane, Biochim. Biophys. Acta, 1807, 359, 10.1016/j.bbabio.2010.11.008
Teardo, 2015, Alternative splicing-mediated targeting of the Arabidopsis GLUTAMATE RECEPTOR3.5 to mitochondria affects organelle morphology, Plant Physiol., 167, 216, 10.1104/pp.114.242602
Terashima, 2012, Calcium-dependent regulation of cyclic photosynthetic electron transfer by a CAS, ANR1, and PGRL1 complex, Proc. Natl. Acad. Sci. USA, 109, 17717, 10.1073/pnas.1207118109
Tester, 1989, Direct measurement of k channels in thylakoid membranes by incorporation of vesicles into planar lipid bilayers, Plant Physiol., 91, 249, 10.1104/pp.91.1.249
Tomizioli, 2014, Deciphering thylakoid sub-compartments using a mass spectrometry-based approach, Mol. Cell. Proteomics, 13, 2147, 10.1074/mcp.M114.040923
Trono, 2014, Transport pathways–proton motive force interrelationship in durum wheat mitochondria, Int. J. Mol. Sci., 15, 8186, 10.3390/ijms15058186
Tunc-Ozdemir, 2013, Cyclic nucleotide gated channels 7 and 8 are essential for male reproductive fertility, PLoS One, 8, e55277, 10.1371/journal.pone.0055277
Tunc-Ozdemir, 2013, A cyclic nucleotide-gated channel (CNGC16) in pollen is critical for stress tolerance in pollen reproductive development, Plant Physiol., 161, 1010, 10.1104/pp.112.206888
Uehlein, 2008, Function of Nicotiana tabacum aquaporins as chloroplast gas pores challenges the concept of membrane CO2 permeability, Plant Cell, 20, 648, 10.1105/tpc.107.054023
van den Wijngaard, 1997, A 50-picosiemens anion channel of the chloroplast envelope is involved in chloroplast protein import, J. Biol. Chem., 272, 29430, 10.1074/jbc.272.47.29430
Veley, 2014, Arabidopsis MSL10 has a regulated cell death signaling activity that is separable from its mechanosensitive ion channel activity, Plant Cell, 26, 3115, 10.1105/tpc.114.128082
Velisetty, 2012, Desensitization mechanism in prokaryotic ligand-gated ion channel, J. Biol. Chem., 287, 18467, 10.1074/jbc.M112.348045
Very, 2002, Cation channels in the Arabidopsis plasma membrane, Trends Plant Sci., 7, 168, 10.1016/S1360-1385(02)02262-8
Vianello, 2012, The mitochondrial permeability transition pore (PTP) - an example of multiple molecular exaptation?, Biochim. Biophys. Acta, 1817, 2072, 10.1016/j.bbabio.2012.06.620
Villarejo, 2005, Evidence for a protein transported through the secretory pathway en route to the higher plant chloroplast, Nat. Cell Biol., 7, 1224, 10.1038/ncb1330
Vincill, 2012, Ca(2+) conduction by an amino acid-gated ion channel related to glutamate receptors, Plant Physiol., 159, 40, 10.1104/pp.112.197509
Voelker, 2006, Members of the Arabidopsis AtTPK/KCO family form homomeric vacuolar channels in planta, Plant J., 48, 296, 10.1111/j.1365-313X.2006.02868.x
von Charpuis, 2015, The sorting of a small potassium channel in mammalian cells can be shifted between mitochondria and plasma membrane, Cell Calcium, 58, 114, 10.1016/j.ceca.2014.09.009
Waditee, 2004, Isolation and functional characterization of Ca2+/H+ antiporters from cyanobacteria, J. Biol. Chem., 279, 4330, 10.1074/jbc.M310282200
Wagner, 2015, The EF-Hand Ca2+ binding protein MICU choreographs mitochondrial Ca2+ dynamics in Arabidopsis, Plant Cell, 27, 3190, 10.1105/tpc.15.00509
Wang, 2003, Transgenic expression of a putative calcium transporter affects the time of Arabidopsis flowering, Plant J., 33, 285, 10.1046/j.1365-313X.2003.01627.x
Ward, 2009, Plant ion channels: gene families, physiology, and functional genomics analyses, Annu. Rev. Physiol., 71, 59, 10.1146/annurev.physiol.010908.163204
Weber, 2005, Solute transporters of the plastid envelope membrane, Annu. Rev. Plant Biol., 56, 133, 10.1146/annurev.arplant.56.032604.144228
Weis, 2013, Protein targeting to subcellular organelles via MRNA localization, Biochim. Biophys. Acta, 1833, 260, 10.1016/j.bbamcr.2012.04.004
Wilson, 2014, Plastid osmotic stress activates cellular stress responses in Arabidopsis, Plant Physiol., 165, 119, 10.1104/pp.114.236620
Witt, 1979, Energy conversion in the functional membrane of photosynthesis. Analysis by light pulse and electric pulse methods. The central role of the electric field, Biochim. Biophys. Acta, 505, 355, 10.1016/0304-4173(79)90008-9
Xu, 2015, Organellar channels and transporters, Cell Calcium, 58, 1, 10.1016/j.ceca.2015.02.006
Yin, 2015, The membrane proteome of stroma thylakoids from Arabidopsis thaliana studied by successive in-solution and in-gel digestion, Physiol. Plant., 154, 433, 10.1111/ppl.12308
Yogev, 2011, Dual targeting of mitochondrial proteins: mechanism, regulation and function, Biochim. Biophys. Acta, 1808, 1012, 10.1016/j.bbamem.2010.07.004
Zanetti, 2010, A novel potassium channel in photosynthetic cyanobacteria, PLoS One, 5, e10118, 10.1371/journal.pone.0010118
Zifarelli, 2010, CLC transport proteins in plants, FEBS Lett., 584, 2122, 10.1016/j.febslet.2009.12.042
Zoratti, 1995, The mitochondrial permeability transition, Biochim. Biophys. Acta, 1241, 139, 10.1016/0304-4157(95)00003-A
Zottini, 1993, The use of Fura-2 fluorescence to monitor the movement of free calcium ions into the matrix of plant mitochondria (Pisum sativum and Helianthus tuberosus), Plant Physiol., 102, 573, 10.1104/pp.102.2.573
Zottini, 2008, Agroinfiltration of grapevine leaves for fast transient assays of gene expression and for long-term production of stable transformed cells, Plant Cell Rep., 27, 845, 10.1007/s00299-008-0510-4