Introgression of sharp eyespot resistance from Dasypyrum villosum chromosome 2VL into bread wheat

Chen, 2010, Composition of wheat rhizosphere antagonistic bacteria and wheat sharp eyespot as afected by rice straw mulching, Pedosphere, 20, 505, 10.1016/S1002-0160(10)60040-9 Lemańczyk, 2013, Effects of sharp eyespot (Rhizoctonia cerealis) on yield and grain quality of winter wheat, Eur. J. Plant Pathol., 135, 187, 10.1007/s10658-012-0077-3 Wang, 2021, The Mitogen-Activated Protein Kinase Kinase TaMKK5 Mediates Immunity Via The TaMKK5–TaMPK3–TaERF3 Module, Plant Physiol., 187, 2323, 10.1093/plphys/kiab227 Chen, 2013, Mapping of QTL conferring resistance to sharp eyespot (Rhizoctonia cerealis) in bread wheat at the adult plant growth stage, Theor. Appl. Genet., 126, 2865, 10.1007/s00122-013-2178-6 Liu, 2021, Genetic dissection of adult plant resistance to sharp eyespot using an updated genetic map of Niavt14 × Xuzhou 25 winter wheat recombinant inbred line population, Plant Dis., 105, 997, 10.1094/PDIS-09-20-1924-RE de Pace, 2011, Dasypyrum, 185 Grądzielewska, 2006, The genus Dasypyrum—part 2. Dasypyrum villosum—a wild species used in wheat improvement, Euphytica, 152, 441, 10.1007/s10681-006-9245-x Zhang, 2022, Fine mapping of powdery mildew and stripe rust resistance genes Pm5V/Yr5V transferred from Dasypyrum villosum into wheat without yield penalty, Theor. Appl. Genet., 135, 3629, 10.1007/s00122-022-04206-9 Cao, 2011, Serine/Threonine Kinase Gene Stpk-V, A Key Member Of Powdery Mildew Resistance Gene Pm21, Confers Powdery Mildew Resistance In Wheat, Proc. Natl. Acad. Sci. U. S. A., 108, 7727, 10.1073/pnas.1016981108 Chen, 1995, Development and molecular cytogenetic analysis of wheat-Haynaldia villosa 6VS/6AL translocation lines specifying resistance to powdery mildew, Theor. Appl. Genet., 91-91, 1125, 10.1007/BF00223930 Zhang, 2016, Pm55, a developmental-stage and tissue-specific powdery mildew resistance gene introgressed from Dasypyrum villosum into common wheat, Theor. Appl. Genet., 129, 1975, 10.1007/s00122-016-2753-8 Zhang, 2018, Pm62, an adult-plant powdery mildew resistance gene introgressed from Dasypyrum villosum chromosome arm 2VL into wheat, Theor. Appl. Genet., 131, 2613, 10.1007/s00122-018-3176-5 Zhang, 2021, Pm67, a new powdery mildew resistance gene transferred from Dasypyrum villosum chromosome 1V to common wheat (Triticum aestivum L.), Crop J., 9, 882, 10.1016/j.cj.2020.09.012 Qi, 2011, A novel Robertsonian translocation event leads to transfer of a stem rust resistance gene (Sr52) effective against race Ug99 from Dasypyrumvillosum into bread wheat, Theor. Appl. Genet., 123, 159, 10.1007/s00122-011-1574-z Zhang, 2005, Development and characterization of a Triticum aestivum-Haynaldia villosa translocation line T4VS⋅4DL conferring resistance to wheat spindle streak mosaic virus, Euphytica, 145, 317, 10.1007/s10681-005-1743-8 Zhang, 2016, Cereal cyst nematode resistance gene CreV effective against Heterodera filipjevi transferred from chromosome 6VL of Dasypyrum villosum to bread wheat, Mol. Breed., 36, 122, 10.1007/s11032-016-0549-9 Lukaszewski, 2017, Re-engineering of the Pm21 transfer from Haynaldia villosa to bread wheat by induced homoeologous recombination, Crop Sci., 57, 2590, 10.2135/cropsci2017.03.0192 Xing, 2018, Pm21 from Haynaldia villosa encodes a CC-NBS-LRR protein conferring powdery mildew resistance in wheat, Mol. Plant, 11, 874, 10.1016/j.molp.2018.02.013 Friebe, 1996, Characterization of wheat-alien translocations conferring resistance to diseases and pests: current status, Euphytica, 91, 59, 10.1007/BF00035277 Nasuda, 1998, Structural rearrangement in chromosome 2M of Aegilops comosa has prevented the utilization of the Compair and related wheat-Ae. comosa translocations in wheat improvement, Theor. Appl. Genet., 96, 780, 10.1007/s001220050802 Xiao, 2017, Sequencing flow-sorted short arm of Haynaldia villosa chromosome 4V provides insights into its molecular structure and virtual gene order, BMC Genomics, 18, 791, 10.1186/s12864-017-4211-7 Xing, 2021, Long-range assembly of sequences helps to unravel the genome structure and small variation of the wheat–Haynaldia villosa translocated chromosome 6VS.6AL, Plant Biotechnol. J., 19, 1567, 10.1111/pbi.13570 Zhang, 2013, Distribution of highly repeated DNA sequences in Haynaldia villosa and its application in the identification of alien chromatin, Chin. Sci. Bull., 58, 890, 10.1007/s11434-012-5598-9 Zhang, 2015, Characterization of a Triticum aestivum–Dasypyrum villosum T2VS·2DL translocation line expressing a longer spike and more kernels traits, Theor. Appl. Genet., 128, 2415, 10.1007/s00122-015-2596-8 Zadoks, 1974, A decimal code for the growth stages of cereals, Weed Res., 14, 415, 10.1111/j.1365-3180.1974.tb01084.x Jiang, 2016, Quantitative trait loci for resistance to Sharp Eyespot (Rhizoctonia cerealis) in recombinant inbred wheat lines from the cross Niavt 14 ×Xuzhou 25, Czech J. Genet, Plant Breed., 52, 139 Vrána, 2000, Flow sorting of mitotic chromosomes in common wheat (Triticum aestivum L.), Genetics, 156, 2033, 10.1093/genetics/156.4.2033 Kubaláková, 2002, Flow karyotyping and chromosome sorting in bread wheat (Triticum aestivum L.), Theor. Appl. Genet., 104, 1362, 10.1007/s00122-002-0888-2 Giorgi, 2013, FISHIS: Fluorescence in situ hybridization in suspension and chromosome flow sorting made easy, PLoS ONE, 8, e57994, 10.1371/journal.pone.0057994 Šimková, 2008, Coupling amplified DNA from flow-sorted chromosomes to high-density SNP mapping in barley, BMC Genomics, 9, 294, 10.1186/1471-2164-9-294 Chapman, 2011, Meraculous: de novo genome assembly with short paired-end reads, PLoS ONE, 6, e23501, 10.1371/journal.pone.0023501 Iwgsc, 2018, Shifting the limits in wheat research and breeding using a fully annotated reference genome, Science, 361, eaar7191, 10.1126/science.aar7191 Keller, 2011, A novel hybrid gene prediction method employing protein multiple sequence alignments, Bioinformatics, 27, 757, 10.1093/bioinformatics/btr010 Keilwagen, 2016, Using intron position conservation for homology-based gene prediction, Nucleic Acids Res., 44, e89, 10.1093/nar/gkw092 Mascher, 2021, Long-read sequence assembly: a technical evaluation in barley, Plant Cell, 33, 1888, 10.1093/plcell/koab077 Li, 2021, A high-quality genome assembly highlights rye genomic characteristics and agronomically important genes, Nat. Genet., 53, 574, 10.1038/s41588-021-00808-z Wang, 2020, Horizontal gene transfer of Fhb7 from fungus underlies Fusarium head blight resistance in wheat, Science, 368, eaba5435, 10.1126/science.aba5435 Emms, 2015, OrthoFinder: solving fundamental biases in whole genome comparisons dramatically improves orthogroup inference accuracy, Genome Biol., 16, 157, 10.1186/s13059-015-0721-2 Katoh, 2017, MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization, Brief. Bioinform., 20, 1160, 10.1093/bib/bbx108 Stamatakis, 2014, RAxML version 8: a tool for phylogenetic analysis and post-analysis of large phylogenies, Bioinformatics, 30, 1312, 10.1093/bioinformatics/btu033 Walkowiak, 2020, Multiple wheat genomes reveal global variation in modern breeding, Nature, 588, 277, 10.1038/s41586-020-2961-x H. Li, Aligning sequence reads, clone sequences and assembly contigs with BWA-MEM, arXiv (2013) 13033997. Danecek, 2017, BCFtools/csq: haplotype-aware variant consequences, Bioinformatics, 33, 2037, 10.1093/bioinformatics/btx100 Semagn, 2014, Single nucleotide polymorphism genotyping using Kompetitive Allele Specific PCR (KASP): overview of the technology and its application in crop improvement, Mol. Breed., 33, 1, 10.1007/s11032-013-9917-x Bassam, 1991, Fast and sensitive silver staining of DNA in polyacrylamide gels, Biochem, Anal. Biochem., 196, 80, 10.1016/0003-2697(91)90120-I Kumar, 2007, QTL mapping for yield and yield contributing traits in two mapping populations of bread wheat, Mol. Breed., 19, 163, 10.1007/s11032-006-9056-8 Law, 1978, A Genetic study of day-length response in wheat, Heredity, 41, 185, 10.1038/hdy.1978.87 Miao, 2022, Major genomic regions for wheat grain weight as revealed by QTL linkage mapping and Meta-analysis, Front. Plant Sci., 13, 10.3389/fpls.2022.802310 Hysing, 2007, Agronomic performance and multiple disease resistance in T2BS.2RL wheat-rye translocation lines, Crop Sci., 47, 254, 10.2135/cropsci2006.04.0269 Allard, 1954, Inheritance of resistance to stem rust and powdery mildew in cytologically stable spring wheats derived from triticum-timopheevi, Phytopathology, 44, 266 McIntosh, 1995 Gaire, 2020, Identification of regions under selection and loci controlling agronomic traits in a soft red winter wheat population, Plant Genome, 13, e20031, 10.1002/tpg2.20031