Interfacial metal-binding site design

Current Opinion in Biotechnology - Tập 6 - Trang 419-424 - 1995
David J Matthews1
1Arris Pharmaceutical Corporation, 385 Oyster Point Boulevard, Suite #3, South San Francisco, California 94080, USA.

Tài liệu tham khảo

Ibers, 1980, Modeling coordination sites in metallo-biomolecules, Science, 209, 223, 10.1126/science.7384796 Findlay, 1992, Metal ion binding by proteins, Curr Opin Struct Biol, 2, 57, 10.1016/0959-440X(92)90177-9 Regan, 1993, The design of metal binding sites in proteins, Annu Rev Biophys Biomol Struct, 22, 257, 10.1146/annurev.bb.22.060193.001353 Berg, 1993, Metalloprotein design, Curr Opin Struct Biol, 3, 585, 10.1016/0959-440X(93)90087-2 Arnold, 1993, Engineering proteins for non-natural environments, FASEB J, 7, 744, 10.1096/fasebj.7.9.8330682 Tainer, 1991, Metal-binding sites in proteins, Curr Opin Biotechnol, 2, 582, 10.1016/0958-1669(91)90084-I Canters, 1993, Engineering type 1 copper sites in proteins, FEBS Lett, 325, 39, 10.1016/0014-5793(93)81410-2 Arnold, 1991, Metal-affinity separations: a new dimension in protein processing, Biotechnology, 9, 151, 10.1038/nbt0291-151 Arnold, 1991, Engineered metal-binding proteins: purification to protein folding, Science, 252, 1796, 10.1126/science.1648261 Haymore, 1992, Introducing strong metal binding sites onto surfaces of proteins for facile and efficient metal-affinity purifications, Methods Companion Methods Enzymol, 4, 25, 10.1016/1046-2023(92)90054-C Braxton, 1992, Incorporation of a stabilizing Ca2+ binding loop into subtilisin BPN', Biochemistry, 31, 7796, 10.1021/bi00149a008 Kuroki, 1992, Entropic stabilization of a mutant human lysozyme induced by calcium binding, Proc Natl Acad Sci USA, 89, 6803, 10.1073/pnas.89.15.6803 Muheim, 1993, Ruthenium-mediated protein cross-linking and stabilization, J Am Chem Soc, 115, 5312, 10.1021/ja00065a060 Regan, 1990, A tetrahedral zinc(II)-binding site introduced into a designed protein, Biochemistry, 29, 10878, 10.1021/bi00501a003 Handel, 1990, De novo design of a Zn2+-binding protein, J Am Chem Soc, 112, 6710, 10.1021/ja00174a039 Handel, 1993, Metal-ion dependent modulation of the dynamics of a designed protein, Science, 261, 879, 10.1126/science.8346440 Pessi, 1993, A designed metal-binding protein with a novel fold, Nature, 362, 367, 10.1038/362367a0 Barbas, 1993, Direct selection of antibodies that coordinate metals from semisynthetic combinatorial libraries, Proc Natl Acad Sci USA, 90, 6385, 10.1073/pnas.90.14.6385 Stewart, 1994, Creation of a novel biosensor for Zn(II), J Am Chem Soc, 116, 415, 10.1021/ja00080a065 Glusker, 1991, Structural aspects of metal liganding to functional groups in proteins, Adv Prot Chem, 42, 1, 10.1016/S0065-3233(08)60534-3 Vriend, 1991, Detection of common three-dimensional substructures in proteins, Proteins, 11, 52, 10.1002/prot.340110107 Gregory, 1993, The prediction and characterization of metal binding sites in proteins, Protein Eng, 6, 29, 10.1093/protein/6.1.29 Yamashita, 1990, Where metal ions bind in proteins, Proc Natl Acad Sci USA, 87, 5648, 10.1073/pnas.87.15.5648 Suh, 1991, Characterization of His-X3-His sites in α-helices of synthetic metal-binding bovine somatotropin, Protein Eng, 4, 301, 10.1093/protein/4.3.301 Ill, 1993, A COOH-terminal peptide confers regiospecific orientation and facilitates atomic force microscopy of an IgG1, Biophys J, 64, 919, 10.1016/S0006-3495(93)81452-8 Walker, 1994, A poreforming protein with a metal-actuated switch, Protein Eng, 7, 655, 10.1093/protein/7.5.655 Yellen, 1994, An engineered cysteine in the external mouth of a K+ channel allows inactivation to be modulated by metal binding, Biophys J, 66, 1068, 10.1016/S0006-3495(94)80888-4 Schild, 1991, Competitive binding interaction between Zn2+ and saxitoxin in cardiac Na+ channels. Evidence for a sulfhydryl group in the Zn2+/saxitoxin binding site, Biophys J, 59, 523, 10.1016/S0006-3495(91)82269-X Backx, 1992, Molecular localization of an ion-binding site within the pore of mammalian sodium channels, Science, 257, 248, 10.1126/science.1321496 Corey, 1989, Introduction of a metal-dependent regulatory switch into an enzyme, J Biol Chem, 264, 3666, 10.1016/S0021-9258(19)84902-5 Higaki, 1990, Regulation of serine protease activity by an engineered metal switch, Biochemistry, 29, 8582, 10.1021/bi00489a012 McGrath, 1993, Structure of an engineered metal-actuated switch in trypsin, Biochemistry, 32, 1914, 10.1021/bi00059a005 Willett, 1995, Engineered metal regulation of trypsin specificity, Biochemistry, 34, 2172, 10.1021/bi00007a010 Browner, 1994, Identification of the molecular trigger for allosteric activation in glycogen phosphorylase, Nature Struct Biol, 1, 327, 10.1038/nsb0594-327 Barfod, 1991, Structural mechanism for glycogen phosphorylase control by phosphorylation and AMP, J Mol Biol, 218, 233, 10.1016/0022-2836(91)90887-C Blundell, 1972, Insulin the structure in the crystal and its reflection in chemistry and biology, Adv Protein Chem, 26, 279, 10.1016/S0065-3233(08)60143-6 Cunningham, 1991, Dimerization of human growth hormone by zinc, Science, 253, 545, 10.1126/science.1907025 Cunningham, 1990, Zinc mediation of the binding of human growth hormone to the human prolactin receptor, Science, 250, 1709, 10.1126/science.2270485 Mahadevan, 1995, A divalent metal ion binding site in the kinase insert domain of the α-platelet-derived growth factor receptor regulates its association with SH2 domains, Biochemistry, 34, 2095, 10.1021/bi00007a002 Matthews, 1994, Engineering an interfacial zinc site to increase hormone-receptor affinity, Chem Biol, 1, 25, 10.1016/1074-5521(94)90037-X Somers, 1994, The X-ray structure of a growth hormone—prolactin receptor complex, Nature, 372, 478, 10.1038/372478a0 Cuenod, 1993, Altered specificity of DNA-binding proteins with transition metal dimerization domains, Science, 259, 510, 10.1126/science.8424173 Cuenod B, Schepartz A: Design of a metallo-bZIP protein that discriminates between CRE and AP1 target sites: selection against AP1. Proc Natl Acad Sci USA 90:1154–1159. Lieberman, 1991, Iron(II) organizes a synthetic peptide into three-helix bundles, J Am Chem Soc, 113, 1470, 10.1021/ja00004a090 Ghadiri, 1992, Design of an artificial 4-helix bundle metalloprotein via a novel ruthenium(II)-assisted self-assembly process, J Am Chem Soc, 114, 4000, 10.1021/ja00036a072 Ghadiri, 1992, A convergent approach to protein design. Metal ion-assisted spontaneous self-assembly of a polypeptide into a triple-helix bundle protein, J Am Chem Soc, 114, 825, 10.1021/ja00029a004 Choma, 1994, Design of a heme-binding four helix bundle, J Am Chem Soc, 116, 856, 10.1021/ja00082a005 Robertson, 1994, Design and synthesis of multi-haem proteins, Nature, 368, 425, 10.1038/368425a0 Hoess, 1993, Phage display of peptides and protein domains, Curr Opin Struct Biol, 3, 572, 10.1016/0959-440X(93)90085-Y